Mercurial > repos > iuc > cnvkit_coverage
view test-data/fasta_indexes.loc @ 2:9f1a85d75122 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit bced16a45d19b243a244a093c3b3504b2640d5e0
author | iuc |
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date | Mon, 22 Apr 2024 17:42:03 +0000 |
parents | 283ab3112eea |
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#This is a sample file distributed with Galaxy that enables tools #to use a directory of Samtools indexed sequences data files. You will need #to create these data files and then create a fasta_indexes.loc file #similar to this one (store it in this directory) that points to #the directories in which those files are stored. The fasta_indexes.loc #file has this format (white space characters are TAB characters): # # <unique_build_id> <dbkey> <display_name> <file_base_path> # #So, for example, if you had hg19 Canonical indexed stored in # # /depot/data2/galaxy/hg19/sam/, # #then the fasta_indexes.loc entry would look like this: # #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /depot/data2/galaxy/hg19/sam/hg19canon.fa # #and your /depot/data2/galaxy/hg19/sam/ directory #would contain hg19canon.fa and hg19canon.fa.fai files. # #Your fasta_indexes.loc file should include an entry per line for #each index set you have stored. The file in the path does actually #exist, but it should never be directly used. Instead, the name serves #as a prefix for the index file. For example: # test_buildid hg17 test_displayname ${__HERE__}/genome.fasta