Mercurial > repos > iuc > codeml
comparison codeml.xml @ 2:66228e9c29d9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/codeml commit 29dba85647adf75fd7276d5da0f3cc1b8eda23ea"
| author | iuc |
|---|---|
| date | Thu, 26 Dec 2019 05:34:15 -0500 |
| parents | ba71e26d5bdc |
| children | b2b8e75a962d |
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| 1:ba71e26d5bdc | 2:66228e9c29d9 |
|---|---|
| 1 <tool name="codeML" id="codeml" version="1.0"> | 1 <tool name="codeML" id="codeml" version="@WRAPPER_VERSION@+galaxy1" profile="18.01"> |
| 2 <description> | 2 <description> |
| 3 Detects positive selection (paml package) | 3 Detects positive selection (paml package) |
| 4 </description> | 4 </description> |
| 5 | 5 |
| 6 <macros> | 6 <macros> |
| 7 <import>macros.xml</import> | 7 <import>macros.xml</import> |
| 8 </macros> | 8 </macros> |
| 9 | 9 |
| 10 <requirements> | 10 <requirements> |
| 11 <requirement type="package" version="4.9">paml</requirement> | 11 <requirement type="package" version="@WRAPPER_VERSION@">paml</requirement> |
| 12 </requirements> | 12 </requirements> |
| 13 | 13 |
| 14 <version_command><![CDATA[ codeml /dev/null 2>&1 | tail -1 ]]></version_command> | 14 <version_command><![CDATA[ codeml /dev/null 2>&1 | tail -1 ]]></version_command> |
| 15 | 15 |
| 16 <command><![CDATA[ | 16 <command><![CDATA[ |
| 17 cp '$codeml_ctl' '$ctl' && | |
| 17 codeml '$codeml_ctl' | 18 codeml '$codeml_ctl' |
| 18 && | |
| 19 mv '$codeml_ctl' '$ctl' | |
| 20 ]]></command> | 19 ]]></command> |
| 21 | 20 |
| 22 <configfiles> | 21 <configfiles> |
| 23 <configfile name="codeml_ctl"><![CDATA[ | 22 <configfile name="codeml_ctl"><![CDATA[ |
| 24 seqfile = $concat_nuc * sequence data file name | 23 seqfile = $concat_nuc * sequence data file name |