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changeset 2:66228e9c29d9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/codeml commit 29dba85647adf75fd7276d5da0f3cc1b8eda23ea"
author iuc
date Thu, 26 Dec 2019 05:34:15 -0500
parents ba71e26d5bdc
children b2b8e75a962d
files codeml.xml macros.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/codeml.xml	Wed May 02 05:44:08 2018 -0400
+++ b/codeml.xml	Thu Dec 26 05:34:15 2019 -0500
@@ -1,4 +1,4 @@
-<tool name="codeML" id="codeml" version="1.0">
+<tool name="codeML" id="codeml" version="@WRAPPER_VERSION@+galaxy1" profile="18.01">
     <description>
         Detects positive selection (paml package)
     </description>
@@ -8,15 +8,14 @@
     </macros>
 
     <requirements>
-        <requirement type="package" version="4.9">paml</requirement>
+        <requirement type="package" version="@WRAPPER_VERSION@">paml</requirement>
     </requirements>
 
     <version_command><![CDATA[ codeml /dev/null 2>&1 | tail -1 ]]></version_command>
 
     <command><![CDATA[
+cp '$codeml_ctl' '$ctl' &&
 codeml '$codeml_ctl'
-&&
-mv '$codeml_ctl' '$ctl'
     ]]></command>
 
     <configfiles>
--- a/macros.xml	Wed May 02 05:44:08 2018 -0400
+++ b/macros.xml	Thu Dec 26 05:34:15 2019 -0500
@@ -1,4 +1,5 @@
 <macros>
+    <token name="@WRAPPER_VERSION@">4.9</token>
     <xml name="FSsites_br0" >
         <param argument="NSsites" type="select" label="Site model ; fix_alpha !=1 and alpha !=0 are not compatible with NSsites !=0" >
             <option value="0" selected="true">0 : e.g. basic model if model=0</option>
@@ -23,4 +24,4 @@
             <option value="3">3 (Warning: only two branch type allowed for branch models)</option>
         </param>
     </xml>
-</macros>
\ No newline at end of file
+</macros>