view macros.xml @ 0:cc5a776acd47 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"

<macros>
    <token name="@TOOL_VERSION@">0.1.2</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">naltorfs</requirement>
            <yield/>
        </requirements>
    </xml>
    <xml name="translation_table_select_parameter">
        <param argument="--translation_table" type="select" label="Translation table">
            <option value="1" selected="true">Table 1 Standard, SGC0</option>
            <option value="2">Table 2 Vertebrate Mitochondrial, SGC1</option>
            <option value="3">Table 3 Yeast Mitochondrial, SGC2</option>
            <option value="4">Table 4 Mold Mitochondrial, Protozoan Mitochondrial, Coelenterate Mitochondrial, Mycoplasma, Spiroplasma, SGC3</option>
            <option value="5">Table 5 Invertebrate Mitochondrial, SGC4</option>
            <option value="6">Table 6 Ciliate Nuclear, Dasycladacean Nuclear, Hexamita Nuclear, SGC5</option>
            <option value="9">Table 9 Echinoderm Mitochondrial, Flatworm Mitochondrial, SGC8</option>
            <option value="10">Table 10 Euplotid Nuclear, SGC9</option>
            <option value="11">Table 11 Bacterial, Archaeal, Plant Plastid</option>
            <option value="12">Table 12 Alternative Yeast Nuclear</option>
            <option value="13">Table 13 Ascidian Mitochondrial</option>
            <option value="14">Table 14 Alternative Flatworm Mitochondrial</option>
            <option value="15">Table 15 Blepharisma Macronuclear</option>
            <option value="16">Table 16 Chlorophycean Mitochondrial</option>
            <option value="21">Table 21 Trematode Mitochondrial</option>
            <option value="22">Table 22 Scenedesmus obliquus Mitochondrial</option>
            <option value="23">Table 23 Thraustochytrium Mitochondrial</option>
            <option value="24">Table 24 Pterobranchia Mitochondrial</option>
            <option value="25">Table 25 Candidate Division SR1, Gracilibacteria</option>
            <option value="26">Table 26 Pachysolen tannophilus Nuclear</option>
            <option value="27">Table 27 Karyorelict Nuclear</option>
            <option value="28">Table 28 Condylostoma Nuclear</option>
            <option value="29">Table 29 Mesodinium Nuclear</option>
            <option value="30">Table 30 Peritrich Nuclear</option>
            <option value="31">Table 31 Blastocrithidia Nuclear</option>
            <option value="32">Table 32 Balanophoraceae Plastid</option>
            <option value="33">Table 33 Cephalodiscidae Mitochondrial</option>
        </param>
    </xml>
    <xml name="edam_ontology">
        <edam_topics>
            <edam_topic>topic_0622</edam_topic>
            <edam_topic>topic_0091</edam_topic>
        </edam_topics>
        <edam_operations>
            <edam_operation>operation_0286</edam_operation>
            <edam_operation>operation_0284</edam_operation>
            <edam_operation>operation_0436</edam_operation>
            <edam_operation>operation_0362</edam_operation>
        </edam_operations>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @UNPUBLISHED{nAltORFs,
                    author = "Kommireddy Vasu and Debjit Khan and Iyappan Ramachandiran and Daniel Blankenberg and Paul L. Fox",
                    title = "Nested Alternate Open Reading Frames and their Encoded Proteins: The Hidden Orfeome",
                    year = "2022"
                }
            </citation>
        </citations>
    </xml>
</macros>