Mercurial > repos > iuc > colibread_lordec
changeset 5:6322de5e24e5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 7ea9a5c6d9e7212c38be96baa6615af1ea9d5a8e"
| author | iuc |
|---|---|
| date | Tue, 13 Oct 2020 21:38:11 +0000 |
| parents | 435a98f01ae9 |
| children | a32b531f66a0 |
| files | lordec.xml |
| diffstat | 1 files changed, 2 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/lordec.xml Mon Aug 17 10:38:08 2020 -0400 +++ b/lordec.xml Tue Oct 13 21:38:11 2020 +0000 @@ -1,5 +1,5 @@ <?xml version='1.0' encoding='utf-8'?> -<tool profile="16.04" id="lordec" name="Lordec" version="0.9"> +<tool profile="16.04" id="lordec" name="Lordec" version="0.9+galaxy1"> <description>is a set a programs for correcting sequencing errors in PacBio reads</description> <macros> <import>macros.xml</import> @@ -16,8 +16,8 @@ -t ${program_type_choice.advanced_options.t} -b ${program_type_choice.advanced_options.b} -e ${program_type_choice.advanced_options.e} - -T ${program_type_choice.advanced_options.T} #end if + -T \${GALAXY_SLOTS:-1} -o '${corrected_read_file}' @@ -60,7 +60,6 @@ <param argument="-t" type="integer" label="Number of target k-mers" value="5" /> <param argument="-b" type="integer" label="Maximum number of branches to explore" value="200" /> <param argument="-e" type="float" label="Maximum error rate" value="0.4" /> - <param argument="-T" type="integer" label="Number of threads" value="1" /> </when> </conditional> </when>