diff crispr_studio.xml @ 1:a227c05e0a55 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crispr_studio/ commit 539468c8c39e3024f000110b16718c40a363f9e5

--- a/crispr_studio.xml	Wed Aug 14 11:37:55 2019 -0400
+++ b/crispr_studio.xml	Wed Mar 13 14:12:11 2024 +0000
@@ -3,6 +3,9 @@
     <description>
         facilitate and accelerate CRISPR array visualization from a GFF3 file generated with CRISPRDetect
     </description>
+    <xrefs>
+        <xref type="bio.tools">crisprstudio</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="1">crispr_studio</requirement>
     </requirements>
@@ -51,7 +54,7 @@
                  <param name="isolate_list" type="data" format="txt" optional="true" label="List of Isolates to show" help="Generate the figure with the subset of isolates listed in the file"/>
             </when>
         </conditional>
-        <param name="n" argument="-n" truevalue="-n" falsevalue="" type="boolean" label="Show the size of the spacers over the boxed diamonds?" help="We recommend to use this option only for experimental analysis of the data"/>
+        <param argument="-n" truevalue="-n" falsevalue="" type="boolean" label="Show the size of the spacers over the boxed diamonds?" help="We recommend to use this option only for experimental analysis of the data"/>
         <param argument="-f" truevalue="-f" falsevalue="" type="boolean" label="Skip the verification of the fasta file generated from the GFF file?" help="The verification is mainly based on the length of the spacer sequences. If a spacer is 1.5 time shorter or longer than the average spacer size of the dataset, a warning is raised and the script stops (Verification is ran by default)."/>
         <param name="cut_off" type="integer" optional="true" label="Score cutoff for pairing of the spacers"/>
         <param argument="-gU" truevalue="-gU" falsevalue="" type="boolean" label="Gray out unique?" help="The unique spacers will be grayed"/>