Mercurial > repos > iuc > crispr_studio
changeset 1:a227c05e0a55 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crispr_studio/ commit 539468c8c39e3024f000110b16718c40a363f9e5
| author | iuc |
|---|---|
| date | Wed, 13 Mar 2024 14:12:11 +0000 |
| parents | 7346619ad005 |
| children | |
| files | crispr_studio.xml |
| diffstat | 1 files changed, 4 insertions(+), 1 deletions(-) [+] |
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--- a/crispr_studio.xml Wed Aug 14 11:37:55 2019 -0400 +++ b/crispr_studio.xml Wed Mar 13 14:12:11 2024 +0000 @@ -3,6 +3,9 @@ <description> facilitate and accelerate CRISPR array visualization from a GFF3 file generated with CRISPRDetect </description> + <xrefs> + <xref type="bio.tools">crisprstudio</xref> + </xrefs> <requirements> <requirement type="package" version="1">crispr_studio</requirement> </requirements> @@ -51,7 +54,7 @@ <param name="isolate_list" type="data" format="txt" optional="true" label="List of Isolates to show" help="Generate the figure with the subset of isolates listed in the file"/> </when> </conditional> - <param name="n" argument="-n" truevalue="-n" falsevalue="" type="boolean" label="Show the size of the spacers over the boxed diamonds?" help="We recommend to use this option only for experimental analysis of the data"/> + <param argument="-n" truevalue="-n" falsevalue="" type="boolean" label="Show the size of the spacers over the boxed diamonds?" help="We recommend to use this option only for experimental analysis of the data"/> <param argument="-f" truevalue="-f" falsevalue="" type="boolean" label="Skip the verification of the fasta file generated from the GFF file?" help="The verification is mainly based on the length of the spacer sequences. If a spacer is 1.5 time shorter or longer than the average spacer size of the dataset, a warning is raised and the script stops (Verification is ran by default)."/> <param name="cut_off" type="integer" optional="true" label="Score cutoff for pairing of the spacers"/> <param argument="-gU" truevalue="-gU" falsevalue="" type="boolean" label="Gray out unique?" help="The unique spacers will be grayed"/>