Mercurial > repos > iuc > crossmap_bed
changeset 4:1e24dd91db95 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 23fab16cd40acbd5b0e9d640ed3858040db7a622
| author | iuc |
|---|---|
| date | Thu, 24 May 2018 19:10:23 -0400 |
| parents | b49e453e6f97 |
| children | e6c68525e9ee |
| files | crossmap_bed.xml macros.xml |
| diffstat | 2 files changed, 6 insertions(+), 8 deletions(-) [+] |
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--- a/crossmap_bed.xml Fri Oct 20 11:33:15 2017 -0400 +++ b/crossmap_bed.xml Thu May 24 19:10:23 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="crossmap_bed" name="CrossMap BED" version="@WRAPPER_VERSION@-0"> +<tool id="crossmap_bed" name="CrossMap BED" version="@WRAPPER_VERSION@"> <description>Convert genome coordinates or annotation files between genome assemblies</description> <macros> <import>macros.xml</import> @@ -24,8 +24,7 @@ #if $merge_unmapped_entries: > '${output_combined}' #else: - '${output_valid}' - && mv '${output_valid}.unmap' '${output_failed}' + output #end if ]]></command> @@ -41,10 +40,10 @@ </inputs> <outputs> - <data name="output_valid" format="bed" label="${tool.name} (valid only) on ${on_string}"> + <data name="output_valid" format="bed" label="${tool.name} (valid only) on ${on_string}" from_work_dir="output"> <filter>merge_unmapped_entries is False</filter> </data> - <data name="output_failed" format="bed" label="${tool.name} (failed only) on ${on_string}"> + <data name="output_failed" format="bed" label="${tool.name} (failed only) on ${on_string}" from_work_dir="output.unmap"> <filter>merge_unmapped_entries is False</filter> </data> @@ -135,7 +134,6 @@ skipped. 7. If input region cannot be consecutively mapped target assembly, it will be split. 8. \*.unmap file contains regions that cannot be unambiguously converted. - ]]></help> <citations>
--- a/macros.xml Fri Oct 20 11:33:15 2017 -0400 +++ b/macros.xml Thu May 24 19:10:23 2018 -0400 @@ -2,11 +2,11 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="0.2.5">crossmap</requirement> + <requirement type="package" version="0.2.7">crossmap</requirement> <yield/> </requirements> </xml> - <token name="@WRAPPER_VERSION@">0.2.5</token> + <token name="@WRAPPER_VERSION@">0.2.7</token> <xml name="stdio"> <stdio> <regex match="Aborted (core dumped)" source="stdout" level="fatal"/>