Mercurial > repos > iuc > crossmap_vcf

changeset 8:6e96c77f5824 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 07b2b6b9b288fd4ad368fc7a4f0143bb73e9edd9"
author iuc
date Tue, 16 Nov 2021 19:16:46 +0000
parents 71730c177cdf
children 18f7e96459d2
files crossmap_vcf.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/crossmap_vcf.xml	Thu Jul 15 16:20:06 2021 +0000
+++ b/crossmap_vcf.xml	Tue Nov 16 19:16:46 2021 +0000
@@ -10,6 +10,8 @@
     <command detect_errors="aggressive"><![CDATA[
 #set $input_file = str($seq_source.input)
 
+ln -s '${seq_source.input_fasta}' 'genome.fasta' &&
+
 CrossMap.py vcf
 
 #if $seq_source.index_source_s == "cached"
@@ -20,7 +22,7 @@
 #end if
 
 '${input_file}'
-'${seq_source.input_fasta}'
+'genome.fasta'
 $no_comp_alleles
 output
     ]]></command>