comparison das_tool.xml @ 3:e23e7bf8491b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/das_tool commit 9c2eb2c9e495cad54084973587d07e8035f3fd9b

2:bdc1f3694a23

        <data name="eval" format="tabular" from_work_dir="outputs_allBins.eval" label="${tool.name} on ${on_string}: Quality and completeness estimates of input bin sets" >
            <filter>output['write_bin_evals']</filter>
        </data>
        <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins">
            <filter>output['write_bins']['write_bins'] != ""</filter>
            <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.fa" format="fasta" directory="outputs_DASTool_bins" />
          </collection>
        <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs" >
            <filter>output['write_bins']['write_bins'] != "" and output['write_bins']['write_unbinned']</filter>
        </data>
        <data name="proteins" format="fasta" from_work_dir="outputs_proteins.faa" label="${tool.name} on ${on_string}: Proteins" >
            <filter>output['proteins']</filter>
        </data>

                <assert_contents>
                    <has_text text="Parameters"/>
                    <has_text text="Predicting genes"/>
                </assert_contents>
            </output>
            <output_collection name="bins" count="1">
                <element name="8" ftype="fasta">
                    <assert_contents>
                        <has_text text=">Ley3_66761_scaffold_6"/>
                    </assert_contents>
                </element>
            </output_collection>

3:e23e7bf8491b

        <data name="eval" format="tabular" from_work_dir="outputs_allBins.eval" label="${tool.name} on ${on_string}: Quality and completeness estimates of input bin sets" >
            <filter>output['write_bin_evals']</filter>
        </data>
        <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins">
            <filter>output['write_bins']['write_bins'] != ""</filter>
            <discover_datasets pattern="^(?!unbinned\.fa)((?P&lt;designation&gt;.*)\.fa)" format="fasta" directory="outputs_DASTool_bins"/>
          </collection>
        <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs">
            <filter>output['write_bins']['write_bins'] != "" and output['write_bins']['write_unbinned']</filter>
        </data>
        <data name="proteins" format="fasta" from_work_dir="outputs_proteins.faa" label="${tool.name} on ${on_string}: Proteins" >
            <filter>output['proteins']</filter>
        </data>

                <assert_contents>
                    <has_text text="Parameters"/>
                    <has_text text="Predicting genes"/>
                </assert_contents>
            </output>
            <output_collection name="bins" count="1"> <!--unbinned.fa must not appear in bins collection. unbinned.fa appears as additional output below.-->
                <element name="metabat.8" ftype="fasta">
                    <assert_contents>
                        <has_text text=">Ley3_66761_scaffold_6"/>
                    </assert_contents>
                </element>
            </output_collection>