Mercurial > repos > iuc > das_tool
changeset 3:e23e7bf8491b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/das_tool commit 9c2eb2c9e495cad54084973587d07e8035f3fd9b
| author | iuc |
|---|---|
| date | Thu, 06 Jul 2023 12:27:11 +0000 |
| parents | bdc1f3694a23 |
| children | 7d997332582e |
| files | das_tool.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/das_tool.xml Mon Dec 26 17:48:00 2022 +0000 +++ b/das_tool.xml Thu Jul 06 12:27:11 2023 +0000 @@ -83,9 +83,9 @@ </data> <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins"> <filter>output['write_bins']['write_bins'] != ""</filter> - <discover_datasets pattern=".*?\.(?P<designation>.*)\.fa" format="fasta" directory="outputs_DASTool_bins" /> + <discover_datasets pattern="^(?!unbinned\.fa)((?P<designation>.*)\.fa)" format="fasta" directory="outputs_DASTool_bins"/> </collection> - <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs" > + <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs"> <filter>output['write_bins']['write_bins'] != "" and output['write_bins']['write_unbinned']</filter> </data> <data name="proteins" format="fasta" from_work_dir="outputs_proteins.faa" label="${tool.name} on ${on_string}: Proteins" > @@ -177,8 +177,8 @@ <has_text text="Predicting genes"/> </assert_contents> </output> - <output_collection name="bins" count="1"> - <element name="8" ftype="fasta"> + <output_collection name="bins" count="1"> <!--unbinned.fa must not appear in bins collection. unbinned.fa appears as additional output below.--> + <element name="metabat.8" ftype="fasta"> <assert_contents> <has_text text=">Ley3_66761_scaffold_6"/> </assert_contents>