Mercurial > repos > iuc > data_manager_deeparg

changeset 1:50f4ff01d845 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_deeparg commit 71ee1813e65704528b3d3f9f8b12fa11ea760fee
author iuc
date Tue, 11 Mar 2025 13:04:13 +0000
parents 4a72de3780aa
children
files data_manager/data_manager_deeparg.xml data_manager_conf.xml test-data/deeparg.loc.test
diffstat 3 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_deeparg.xml	Fri Feb 07 12:17:25 2025 +0000
+++ b/data_manager/data_manager_deeparg.xml	Tue Mar 11 13:04:13 2025 +0000
@@ -2,14 +2,15 @@
     <description></description>
     <macros>
         <token name="@TOOL_VERSION@">1.0.4</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">deeparg</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         mkdir -p '$out_file.extra_files_path' &&
-        deeparg download_data -o '$out_file.extra_files_path/' &&
+        deeparg download_data -o 'deeparg_$version' &&
+        mv 'deeparg_$version' '$out_file.extra_files_path' &&
         cp '$dmjson' '$out_file'
     ]]></command>
      <configfiles>
--- a/data_manager_conf.xml	Fri Feb 07 12:17:25 2025 +0000
+++ b/data_manager_conf.xml	Tue Mar 11 13:04:13 2025 +0000
@@ -8,9 +8,9 @@
                 <column name="path" output_ref="out_file">
                     <move type="directory">
                         <source>${path}</source>
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">deeparg/${value}/${path}</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">deeparg/${path}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/deeparg/${value}/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/deeparg/${path}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
                 <column name="db_version"/> <!-- columns that are going to be specified by the Data Manager Tool -->
--- a/test-data/deeparg.loc.test	Fri Feb 07 12:17:25 2025 +0000
+++ b/test-data/deeparg.loc.test	Tue Mar 11 13:04:13 2025 +0000
@@ -3,3 +3,4 @@
 #file has this format (white space characters are TAB characters)
 #deeparg_1.0.4	Files needed for running deepARG (1.0.4)	deeparg_1.0.4-20241010	/path/to/data	1.0.4
 deeparg_1.0.4-15012025	Files needed for running deepARG v-1.0.4-15012025	/tmp/tmpmy_tbxz7/galaxy-dev/tool-data/deeparg/deeparg_1.0.4-15012025/deeparg_1.0.4	1.0.4
+deeparg_1.0.4-27022025	Files needed for running deepARG v-1.0.4-27022025	/tmp/tmpppnifjtr/galaxy-dev/tool-data/deeparg/deeparg_1.0.4	1.0.4