Mercurial > repos > iuc > data_manager_dram_database_downloader
comparison README @ 1:40c8fc0a2bb0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dram_database_downloader commit 08664fb0e31a61514b787021d54ee5464be6043d
| author | iuc |
|---|---|
| date | Tue, 13 Sep 2022 09:08:55 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 0:bd342a6a5b0f | 1:40c8fc0a2bb0 |
|---|---|
| 1 If Galaxy is configured such that outputs are written to the job working dir | |
| 2 the admin needs to perform one manual step to make the databases useable. | |
| 3 This is because DRAM creates a configuration file during installation, but the | |
| 4 file is written before the Galaxy job finishes, so the database locations are | |
| 5 relative to the job working directory instead of the configured | |
| 6 GALAXY_DATA_MANAGER_DATA_PATH. | |
| 7 | |
| 8 It may be more ideal to perform this task as a second step in the data manager | |
| 9 tool, but DRAM will not allow the configuration file to be updated to point to | |
| 10 locations unless the databases exist in those locations. But the data manager | |
| 11 tool moves the databases to these locations as its last step, making it | |
| 12 impossible to update the DRAM configuration file as a second step of that tool. | |
| 13 | |
| 14 See | |
| 15 https://github.com/WrightonLabCSU/DRAM/wiki/5.-Managing%2C-updating-or-moving-a-DRAM-installation-and-databases | |
| 16 for details. |
