comparison data_manager/gtdbtk_database_installer.py @ 10:3a3cb74b3f6e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit c63b1bff90ebc5b5df0a4cbd9a294fc1d51583c7

9:3248e43703e7

    },
    "226": {
        "full": "https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/auxillary_files/gtdbtk_package/full_package/gtdbtk_r226_data.tar.gz",
        "meta_ar": "https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/ar53_metadata_r226.tsv.gz",
        "meta_bac": "https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/bac120_metadata_r226.tsv.gz",
    },
}


def is_urlfile(url):

    time = date.today().strftime("%Y-%m-%d")
    data_manager_entry = {}
    data_manager_entry["value"] = (
        f"{database_name.replace(' ', '_').lower()}_release_{release}_downloaded_{time}"
    )
    data_manager_entry["name"] = f"{database_name} - release {release} ({time})"
    data_manager_entry["path"] = file_path
    data_manager_entry["version"] = release
    return data_manager_entry

10:3a3cb74b3f6e

    },
    "226": {
        "full": "https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/auxillary_files/gtdbtk_package/full_package/gtdbtk_r226_data.tar.gz",
        "meta_ar": "https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/ar53_metadata_r226.tsv.gz",
        "meta_bac": "https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/bac120_metadata_r226.tsv.gz",
    },
    "mocked": {
        "full": "https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/mockup_db/mockup.tar.gz",
    },
}


def is_urlfile(url):

    time = date.today().strftime("%Y-%m-%d")
    data_manager_entry = {}
    data_manager_entry["value"] = (
        f"{database_name.replace(' ', '_').lower()}_release_{release}_downloaded_{time}"
    )
    if release == "mocked_226":
        data_manager_entry["name"] = "Mocked GTBD DB (226)"
    else:
        data_manager_entry["name"] = f"{database_name} - release {release} ({time})"
    data_manager_entry["path"] = file_path
    data_manager_entry["version"] = release
    return data_manager_entry