Mercurial > repos > iuc > data_manager_humann2_database_downloader

changeset 1:1316375a8cbb draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit b46aa969c01b7e5f4f133192899fa4da286ecf89-dirty
author iuc
date Mon, 13 Mar 2017 12:34:20 -0400
parents 048593e41359
children 6112a571f012
files data_manager/data_manager_humann2_download.xml
diffstat 1 files changed, 5 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_humann2_download.xml	Sun Mar 12 14:33:34 2017 -0400
+++ b/data_manager/data_manager_humann2_download.xml	Mon Mar 13 12:34:20 2017 -0400
@@ -7,10 +7,10 @@
         <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
         <exit_code range="1:"  level="fatal" description="Error" />
     </stdio>
-    <command interpreter="python">
-        data_manager_humann2_download.py
+    <command>
+        python '$__tool_directory__/data_manager_humann2_download.py'
             --database '$db.database'
-            --build '$db.build'
+            --build $db.build
             '${out_file}'
     </command>
     <inputs>
@@ -38,19 +38,16 @@
         </conditional>
     </inputs>
     <outputs>
-           <data name="out_file" format="data_manager_json" label="${tool.name}"/>
+        <data name="out_file" format="data_manager_json" label="${tool.name}" />
     </outputs>
     <tests>
     </tests>
     <help>
-
 This tool downloads the HUMAnN2 databases.
 
-`Read more about the tool <http://huttenhower.sph.harvard.edu/humann2/manual>`_.
-
+Read more about the tool at http://huttenhower.sph.harvard.edu/humann2/manual .
     </help>
     <citations>
         <citation type="doi">10.1371/journal.pcbi.1003153</citation>
-        <yield />
     </citations>
 </tool>