annotate data_manager_conf.xml @ 1:35cef758050c draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
author iuc
date Wed, 09 Oct 2024 08:53:07 +0000
parents 6be6e6198ac3
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6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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1 <data_managers>
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2 <data_manager tool_file="data_manager/data_manager_ncbi_fcs_gx_database_downloader.xml" id="data_manager_ncbi_fcs_gx_database_downloader">
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35cef758050c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
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3 <data_table name="ncbi_fcs_gx_databases_ext">
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4 <output>
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5 <column name="value" />
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6 <column name="name" />
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6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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7 <column name="source_manifest" />
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35cef758050c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
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8 <column name="use_source_manifest" />
35cef758050c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
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9 <column name="phone_home" />
35cef758050c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
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10 <column name="phone_home_label" />
35cef758050c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
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11 <column name="local_manifest" output_ref="output_file">
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6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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12 <move type="directory">
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35cef758050c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
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13 <source>${local_manifest}</source>
35cef758050c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
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14 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ncbi_fcs_gx_databases_ext/${value}</target>
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6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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15 </move>
6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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16 <value_translation><![CDATA[
6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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17 #import os
6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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18 #set manifest_filename = os.path.basename($source_manifest)
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35cef758050c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 25c9d8d297d0e10f92e373f6a959274dedc10433
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19 $GALAXY_DATA_MANAGER_DATA_PATH/ncbi_fcs_gx_databases_ext/$value/$manifest_filename
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20 ]]></value_translation>
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21 <value_translation type="function">abspath</value_translation>
6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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22 </column>
6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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23 </output>
6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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24 </data_table>
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25 <data_table name="ncbi_fcs_gx_divisions">
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26 <output>
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27 <column name="value" />
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28 <column name="tag" />
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29 <column name="name" />
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30 </output>
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31 </data_table>
6be6e6198ac3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader commit 4a6561ed00e004260be3f3c29d81e814c60e20af
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32 </data_manager>
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33 </data_managers>