Mercurial > repos > iuc > data_manager_omamer
view data_manager/omamer.xml @ 2:f8d72275878e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_omamer commit b890cd87ef5cfaa81eda29cc935de224ecb05bb6
author | iuc |
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date | Wed, 14 Aug 2024 15:42:46 +0000 |
parents | 57db282ca204 |
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<tool id="data_manager_omamer" name="OMAmer data manager" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="20.01"> <macros> <import>macros.xml</import> </macros> <version_command></version_command> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/omamer.py' --name '$name' --json '$output_file' --version '@TOOL_VERSION@' ]]></command> <inputs> <param name="output_dir" type="text" label="Output Directory" value=""/> <param name="name" type="select" label="Database"> <option value="Primates_v2.0.0">Primates_v2.0.0</option> <option value="Viridiplantae_v2.0.0">Viridiplantae_v2.0.0</option> <option value="Metazoa_v2.0.0">Metazoa_v2.0.0</option> <option value="LUCA_v0.2.5">LUCA_v0.2.5</option> <option value="LUCA_v2.0.0">LUCA_v2.0.0</option> <option value="Saccharomyceta">Saccharomyceta</option> <option value="Homininae">Homininae</option> </param> </inputs> <outputs> <data name="output_file" format="data_manager_json" label="OMAmer data manager: JSON"/> </outputs> <tests> <test> <param name="output_dir" value="test_galaxy"/> <param name="name" value="Primates_v2.0.0"/> <output name="output_file" file="out.json"/> </test> </tests> <help><![CDATA[ This data manager retrieves data from various pre-built databases. .. _omamer: https://github.com/DessimozLab/omamer ]]></help> <citations> <citation type="doi">10.1093/bioinformatics/btab219</citation> </citations> </tool>