Mercurial > repos > iuc > data_manager_primer_scheme_bedfiles

annotate test-data/primer_scheme_bedfiles.loc @ 2:b3710e492ee4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
author iuc
date Mon, 22 Jun 2020 18:26:10 -0400
parents
children dd451e45681c
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b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
1 # this is a tab separated file describing the location of primer schemes used for amplicon
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
2 # sequencing (e.g. using the ARTIC SARS-CoV-2 protocol)
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
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3 #
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
4 # the columns are:
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
5 # value description path
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
6 #
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
7 # for example
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
8 # SARS-CoV-2-ARTICv1 SARS-CoV-2 ARTIC v1 primers /data/galaxy/tool_data/artic_primers/SARS-CoV-2-ARTICv1.bed
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
9 SARS-CoV-2-ARTICv3 SARS-CoV-2-ARTIC v3 primer set /tmp/tmpYMFYgd/tmpdHhY2S/tmppwFSVU/database/data_manager_tool-dataI2hi9i/primer_scheme_bedfiles/SARS-CoV-2-ARTICv3.bed
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
10 SARS-CoV-2-ARTICv2 SARS-CoV-2-ARTIC v2 primer set /tmp/tmpYMFYgd/tmpdHhY2S/tmppwFSVU/database/data_manager_tool-dataI2hi9i/primer_scheme_bedfiles/SARS-CoV-2-ARTICv2.bed
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
11 SARS-CoV-2-ARTICv1 SARS-CoV-2-ARTIC v1 primer set /tmp/tmpYMFYgd/tmpdHhY2S/tmppwFSVU/database/data_manager_tool-dataI2hi9i/primer_scheme_bedfiles/SARS-CoV-2-ARTICv1.bed
b3710e492ee4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
iuc
parents:
diff changeset
12 sample_primer sample primer scheme /tmp/tmpYMFYgd/tmpdHhY2S/tmppwFSVU/database/data_manager_tool-dataI2hi9i/primer_scheme_bedfiles/sample_primer.bed