Mercurial > repos > iuc > data_manager_star_index_builder
comparison data_manager_conf.xml @ 1:cdc4d8a998e1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
| author | iuc |
|---|---|
| date | Fri, 21 Apr 2017 12:36:31 -0400 |
| parents | e4b87a00b1df |
| children | f537d3e00eb8 |
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| 0:e4b87a00b1df | 1:cdc4d8a998e1 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <data_managers> | 2 <data_managers> |
| 3 | 3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.3"> |
| 4 <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1"> | 4 <data_table name="rnastar_index2"> |
| 5 <data_table name="rnastar_index"> | |
| 6 <output> | 5 <output> |
| 7 <column name="value" /> | 6 <column name="value" /> |
| 8 <column name="dbkey" /> | 7 <column name="dbkey" /> |
| 9 <column name="name" /> | 8 <column name="name" /> |
| 10 <column name="path" output_ref="out_file" > | 9 <column name="path" output_ref="out_file" > |
| 11 <move type="directory" relativize_symlinks="True"> | 10 <move type="directory" relativize_symlinks="True"> |
| 12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> | 11 <!-- <source>${path}</source> |
| 13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target> | 12 out_file.extra_files_path is used as base by default |
| 13 if no source, eg for type=directory, then refers to base | |
| 14 --> | |
| 15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index2/${value}</target> | |
| 14 </move> | 16 </move> |
| 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index/${value}/${path}</value_translation> | 17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index2/${value}/${path}</value_translation> |
| 16 <value_translation type="function">abspath</value_translation> | 18 <value_translation type="function">abspath</value_translation> |
| 17 </column> | 19 </column> |
| 20 <column name="withGTF" /> | |
| 18 </output> | 21 </output> |
| 19 </data_table> | 22 </data_table> |
| 20 </data_manager> | 23 </data_manager> |
| 21 | |
| 22 </data_managers> | 24 </data_managers> |