comparison datamash-ops.xml @ 2:562f3c677828 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7

1:2f3c6f2dcf39

<?xml version="1.0"?>
<tool id="datamash_ops" name="Datamash" version="1.0.6">
    <description>(operations on tabular data)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />

                #end if
                #for $oper in $operations
                    ${oper.op_name}
                    ${oper.op_column}
                #end for
                < $in_file > $out_file
          ]]>
    </command>
    <expand macro="inputs_outputs">
        <param help="Example: to group by the first and fourth fields, use 1,4." label="Group by fields" name="grouping" type="text">
            <validator message="Invalid value in field. Allowed values are 0-9, space, comma." type="regex">^[0-9, ]*$</validator>

                <option value="sskew">Skewness (sample)</option>
                <option value="pskew">Skewness (population)</option>
                <option value="skurt">Kurtosis (sample)</option>
                <option value="pkurt">Kurtosis (population)</option>
                <option value="jarque">Jarque-Bera Normality test</option>
                <option value="dpo">DAgostino-Pearson Omnibus Normality Test</option>
                <option value="mode">Mode</option>
                <option value="antimode">Anti-Mode</option>
                <option value="unique">Combine all unique values</option>
                <option value="collapse">Combine all values</option>
                <option value="countunique">Count Unique values</option>
            </param>
            <param name="op_column" data_ref="in_file" label="On column" type="data_column" />

            <param name="ignore_case" value="false" />
            <repeat name="operations">
                <param name="op_name" value="sum" />
                <param name="op_column" value="3" />
            </repeat>
            <output file="group_compute_output.txt" name="out_file" ftpye="tabular" />
        </test>
    </tests>
    <help>
<![CDATA[
@HELP_HEADER@

2:562f3c677828

<?xml version="1.0"?>
<tool id="datamash_ops" name="Datamash" version="@WRAPPER_VERSION@">
    <description>(operations on tabular data)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />

                #end if
                #for $oper in $operations
                    ${oper.op_name}
                    ${oper.op_column}
                #end for
                < $in_file > '$out_file'
          ]]>
    </command>
    <expand macro="inputs_outputs">
        <param help="Example: to group by the first and fourth fields, use 1,4." label="Group by fields" name="grouping" type="text">
            <validator message="Invalid value in field. Allowed values are 0-9, space, comma." type="regex">^[0-9, ]*$</validator>

                <option value="sskew">Skewness (sample)</option>
                <option value="pskew">Skewness (population)</option>
                <option value="skurt">Kurtosis (sample)</option>
                <option value="pkurt">Kurtosis (population)</option>
                <option value="jarque">Jarque-Bera Normality test</option>
                <option value="dpo">D Agostino-Pearson Omnibus Normality Test</option>
                <option value="mode">Mode</option>
                <option value="antimode">Anti-Mode</option>
                <option value="rand">One random value from the group</option>
                <option value="unique">Combine all unique values</option>
                <option value="collapse">Combine all values</option>
                <option value="countunique">Count Unique values</option>
            </param>
            <param name="op_column" data_ref="in_file" label="On column" type="data_column" />

            <param name="ignore_case" value="false" />
            <repeat name="operations">
                <param name="op_name" value="sum" />
                <param name="op_column" value="3" />
            </repeat>
            <output file="group_compute_output.txt" name="out_file" ftype="tabular" />
        </test>
    </tests>
    <help>
<![CDATA[
@HELP_HEADER@