Mercurial > repos > iuc > deepmicro
changeset 1:c58c1a99578b draft
planemo upload for repository https://github.com/paulzierep/DeepMicro commit 19cd7fd52900e23704975869cd66d5f7b219ae3e
| author | iuc |
|---|---|
| date | Sat, 10 Jun 2023 21:59:04 +0000 |
| parents | 77cbfe3e1b0d |
| children | 2d20b3a1babd |
| files | deepmicro.xml macros.xml |
| diffstat | 2 files changed, 19 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/deepmicro.xml Tue May 02 17:39:13 2023 +0000 +++ b/deepmicro.xml Sat Jun 10 21:59:04 2023 +0000 @@ -30,7 +30,10 @@ #for $params in $mode.parameter_set: - #if $params.rl_type.rl_type_choice == "--pca" or $params.rl_type.rl_type_choice == "--rp": + ## only train classifier without encoding + #if $params.rl_type.rl_type_choice == "no_rl": + DM.py -r 1 -cd features.csv -cl labels.csv --save_rep -m '$params.rl_type.classifier' -t \${GALAXY_SLOTS:-8} && + #elif $params.rl_type.rl_type_choice == "--pca" or $params.rl_type.rl_type_choice == "--rp": DM.py -r 1 -cd features.csv -cl labels.csv '$params.rl_type.rl_type_choice' --save_rep -m '$params.rl_type.classifier' -t \${GALAXY_SLOTS:-8} && #else: DM.py -r 1 -cd features.csv -cl labels.csv '$params.rl_type.rl_type_choice' -dm '$params.rl_type.dm' --save_rep -m '$params.rl_type.classifier' -t \${GALAXY_SLOTS:-8} && @@ -215,6 +218,20 @@ </test> + <test expect_num_outputs="1"> + <param name="features" value="UserDataExample.csv" /> + <param name="mode_type" value="e_and_c" /> + <param name="class_labels" value="UserLabelExample.csv" /> + <param name="rl_type_choice" value="no_rl" /> + <param name="classifier" value="rf" /> + <output ftype="tabular" name="results" > + <assert_contents> + <has_text text="rf" /> + </assert_contents> + </output> + + </test> + <!-- test multiple parameter sets --> <test expect_num_outputs="1"> <param name="features" value="UserDataExample.csv" />
--- a/macros.xml Tue May 02 17:39:13 2023 +0000 +++ b/macros.xml Sat Jun 10 21:59:04 2023 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">1.4</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">22.05</token> <xml name="biotools"> <xrefs>