comparison deseq2_macros.xml @ 27:d027d1f4984e draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit c8e7020d39d581d7374a13cf94c64998a6481e05"

26:6a3a025714d3

                </param>
                <yield/>
            </repeat>
        </repeat>
    </xml>
</macros>

27:d027d1f4984e

                </param>
                <yield/>
            </repeat>
        </repeat>
    </xml>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="1.22.1">bioconductor-deseq2</requirement>
            <!-- Optional dependency of tximport, needed to import kallisto results https://github.com/galaxyproject/usegalaxy-playbook/issues/161 -->
            <requirement type="package" version="2.26.2">bioconductor-rhdf5</requirement>
            <requirement type="package" version="1.10.0">bioconductor-tximport</requirement>
            <requirement type="package" version="1.34.1">bioconductor-genomicfeatures</requirement>
            <requirement type="package" version="1.20.2">r-getopt</requirement>
            <requirement type="package" version="0.8.0">r-ggrepel</requirement>
            <requirement type="package" version="3.0.1">r-gplots</requirement>
            <requirement type="package" version="1.0.10">r-pheatmap</requirement>
            <requirement type="package" version="0.2.20">r-rjson</requirement>
        </requirements>
    </xml>
    <token name="@TOOL_VERSION@">2.11.40.6</token>
    <token name="@SUFFIX_VERSION@">2</token>
    <xml name="edam_ontology">
        <edam_topics>                                                                                  
            <edam_topic>topic_3308</edam_topic>
        </edam_topics>
        <edam_operations>
            <edam_operation>operation_3800</edam_operation>
        </edam_operations>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1186/s13059-014-0550-8</citation>
        </citations>
    </xml>
    <xml name="xrefs">
        <xrefs>
          <xref type='bio.tools'>DESeq2</xref>
        </xrefs>
      </xml>
</macros>