Mercurial > repos > iuc > deseq2
diff deseq2_macros.xml @ 27:d027d1f4984e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit c8e7020d39d581d7374a13cf94c64998a6481e05"
| author | iuc |
|---|---|
| date | Mon, 28 Jun 2021 05:14:25 +0000 |
| parents | e5c8afac22a7 |
| children | 7ff33c2d525b |
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--- a/deseq2_macros.xml Fri Jan 08 20:29:54 2021 +0000 +++ b/deseq2_macros.xml Mon Jun 28 05:14:25 2021 +0000 @@ -18,4 +18,38 @@ </repeat> </repeat> </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="1.22.1">bioconductor-deseq2</requirement> + <!-- Optional dependency of tximport, needed to import kallisto results https://github.com/galaxyproject/usegalaxy-playbook/issues/161 --> + <requirement type="package" version="2.26.2">bioconductor-rhdf5</requirement> + <requirement type="package" version="1.10.0">bioconductor-tximport</requirement> + <requirement type="package" version="1.34.1">bioconductor-genomicfeatures</requirement> + <requirement type="package" version="1.20.2">r-getopt</requirement> + <requirement type="package" version="0.8.0">r-ggrepel</requirement> + <requirement type="package" version="3.0.1">r-gplots</requirement> + <requirement type="package" version="1.0.10">r-pheatmap</requirement> + <requirement type="package" version="0.2.20">r-rjson</requirement> + </requirements> + </xml> + <token name="@TOOL_VERSION@">2.11.40.6</token> + <token name="@SUFFIX_VERSION@">2</token> + <xml name="edam_ontology"> + <edam_topics> + <edam_topic>topic_3308</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_3800</edam_operation> + </edam_operations> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1186/s13059-014-0550-8</citation> + </citations> + </xml> + <xml name="xrefs"> + <xrefs> + <xref type='bio.tools'>DESeq2</xref> + </xrefs> + </xml> </macros> \ No newline at end of file