Mercurial > repos > iuc > ebi_metagenomics_run_downloader
changeset 2:6155fa39a899 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ebi_tools commit 19ea4feff5ccf3744c549b9a67259947a1cb90ba
| author | iuc |
|---|---|
| date | Sat, 21 Jan 2017 14:40:54 -0500 |
| parents | d4e7e110dfdb |
| children | a1ef6c88ee37 |
| files | ebeye_urllib.py generate_macros.py macros.xml |
| diffstat | 3 files changed, 1106 insertions(+), 1218 deletions(-) [+] |
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--- a/ebeye_urllib.py Mon Dec 12 10:04:01 2016 -0500 +++ b/ebeye_urllib.py Sat Jan 21 14:40:54 2017 -0500 @@ -5,19 +5,16 @@ # and distributed under the Apache License # ====================================================================== # Load libraries +import os import platform -import os +import re import urllib -import re +import urllib2 +from gzip import GzipFile from optparse import OptionParser -from gzip import GzipFile +from StringIO import StringIO + from xmltramp2 import xmltramp -# python2 -from StringIO import StringIO -import urllib2 -# python3 -# import urllib.request as urllib2 - # Service base URL baseUrl = 'http://www.ebi.ac.uk/ebisearch/ws/rest'
--- a/generate_macros.py Mon Dec 12 10:04:01 2016 -0500 +++ b/generate_macros.py Sat Jan 21 14:40:54 2017 -0500 @@ -16,10 +16,10 @@ def add_select_parameter(name, label, multiple=False): to_write = '<param ' to_write += 'name="%s" ' % (name) - to_write += 'type="select" ' - to_write += 'label="%s" ' % (label) + to_write += 'type="select"' if multiple: - to_write += 'multiple=\"true\"' + to_write += ' multiple="true" optional="false"' + to_write += ' label="%s"' % (label) to_write += '>\n' return to_write @@ -30,6 +30,7 @@ to_write += '%s<xml name="requirements">\n' % (spaces) to_write += '%s<requirements>\n' % (2 * spaces) + to_write += '%s<requirement type="package" version="2.7.12">python</requirement>\n' % (3 * spaces) to_write += '%s<requirement type="package" version="3.1.1">xmltramp2</requirement>\n' % (3 * spaces) to_write += '%s<requirement type="package" version="1.12">urllib3</requirement>\n' % (3 * spaces) to_write += '%s<yield/>\n' % (3 * spaces) @@ -44,7 +45,7 @@ 'Domain to query')) sorted_domains = [(d, domains_fields[d]['name']) for d in domains_fields.keys()] - sorted_domains = sorted(sorted_domains, key=lambda tup: tup[1]) + sorted_domains.sort(key=lambda tup: tup[1]) for domain in sorted_domains: to_write += '%s%s' % (4 * spaces, add_option( domain[0], @@ -65,7 +66,6 @@ field, field, selected=True)) - to_write += '%s<validator type="no_options" message="Please select at least one field" />\n' % (5 * spaces) to_write += '%s</param>\n' % (4 * spaces) to_write += '%s<repeat name="queries" title="Add a query">\n' % (
--- a/macros.xml Mon Dec 12 10:04:01 2016 -0500 +++ b/macros.xml Sat Jan 21 14:40:54 2017 -0500 @@ -9,7 +9,7 @@ </xml> <xml name="inputs"> <conditional name="searched_domain"> - <param name="domain" type="select" label="Domain to query" > + <param name="domain" type="select" label="Domain to query"> <option value="sra-analysis">Analysis</option> <option value="arrayexpress-repository">ArrayExpress</option> <option value="genome_assembly">Assembly</option> @@ -122,7 +122,7 @@ </param> <when value="sra-analysis"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PROJECT" selected="true">PROJECT</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="SRA-STUDY" selected="true">SRA-STUDY</option> @@ -130,15 +130,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PROJECT">PROJECT</option> <option value="PUBMED">PUBMED</option> <option value="SRA-STUDY">SRA-STUDY</option> @@ -152,7 +151,7 @@ <option value="id">id</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -173,7 +172,7 @@ </when> <when value="arrayexpress-repository"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXONOMY" selected="true">TAXONOMY</option> <option value="data_protocol" selected="true">data_protocol</option> @@ -191,15 +190,14 @@ <option value="submission_date" selected="true">submission_date</option> <option value="submitter_keywords" selected="true">submitter_keywords</option> <option value="tissue" selected="true">tissue</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PUBMED">PUBMED</option> <option value="TAXONOMY">TAXONOMY</option> <option value="acc">acc</option> @@ -235,7 +233,7 @@ <option value="updated_date">updated_date</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -256,7 +254,7 @@ </when> <when value="genome_assembly"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="PROJECT" selected="true">PROJECT</option> <option value="SAMPLE" selected="true">SAMPLE</option> @@ -265,15 +263,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="PROJECT">PROJECT</option> <option value="SAMPLE">SAMPLE</option> @@ -290,7 +287,7 @@ <option value="strain">strain</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -311,7 +308,7 @@ </when> <when value="wgs_masters"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="PROJECT" selected="true">PROJECT</option> <option value="PUBMED" selected="true">PUBMED</option> @@ -321,15 +318,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="PROJECT">PROJECT</option> <option value="PUBMED">PUBMED</option> @@ -356,7 +352,7 @@ <option value="strain">strain</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -377,7 +373,7 @@ </when> <when value="emblrelease_con"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="CABRI" selected="true">CABRI</option> <option value="DOI" selected="true">DOI</option> @@ -407,15 +403,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="CABRI">CABRI</option> <option value="DOI">DOI</option> @@ -476,7 +471,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -497,7 +492,7 @@ </when> <when value="emblnew_con"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="DOI" selected="true">DOI</option> <option value="EC" selected="true">EC</option> @@ -519,15 +514,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="DOI">DOI</option> <option value="EC">EC</option> @@ -577,7 +571,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -598,7 +592,7 @@ </when> <when value="atlas-genes"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ATLAS" selected="true">ATLAS</option> <option value="EMBL" selected="true">EMBL</option> <option value="ENSFAMILY" selected="true">ENSFAMILY</option> @@ -615,15 +609,14 @@ <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> <option value="organism_part" selected="true">organism_part</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ATLAS">ATLAS</option> <option value="EMBL">EMBL</option> <option value="ENSFAMILY">ENSFAMILY</option> @@ -669,7 +662,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -690,7 +683,7 @@ </when> <when value="biomodels"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="3DMET" selected="true">3DMET</option> <option value="BIND" selected="true">BIND</option> <option value="BIOMODELSDATABASE" selected="true">BIOMODELSDATABASE</option> @@ -754,15 +747,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="3DMET">3DMET</option> <option value="BIND">BIND</option> <option value="BIOMODELSDATABASE">BIOMODELSDATABASE</option> @@ -862,7 +854,7 @@ <option value="uniprot_name">uniprot_name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -883,20 +875,19 @@ </when> <when value="biosamples"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="acc">acc</option> <option value="description">description</option> <option value="domain_source">domain_source</option> @@ -905,7 +896,7 @@ <option value="searchwords">searchwords</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -926,20 +917,19 @@ </when> <when value="biosamples-groups"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="acc">acc</option> <option value="description">description</option> <option value="domain_source">domain_source</option> @@ -948,7 +938,7 @@ <option value="searchwords">searchwords</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -969,7 +959,7 @@ </when> <when value="chebi"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option> <option value="ARRAYEXPRESSATLAS" selected="true">ARRAYEXPRESSATLAS</option> <option value="BIOMODELS" selected="true">BIOMODELS</option> @@ -1026,15 +1016,14 @@ <option value="iupac_name" selected="true">iupac_name</option> <option value="name" selected="true">name</option> <option value="smiles" selected="true">smiles</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGRICOLA_CITATION">AGRICOLA_CITATION</option> <option value="ARRAYEXPRESS">ARRAYEXPRESS</option> <option value="ARRAYEXPRESSATLAS">ARRAYEXPRESSATLAS</option> @@ -1115,7 +1104,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1136,7 +1125,7 @@ </when> <when value="chembl-activity"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEMBL-ASSAY" selected="true">CHEMBL-ASSAY</option> <option value="CHEMBL-DOCUMENT" selected="true">CHEMBL-DOCUMENT</option> <option value="CHEMBL-MOLECULE" selected="true">CHEMBL-MOLECULE</option> @@ -1144,15 +1133,14 @@ <option value="id" selected="true">id</option> <option value="standard_type" selected="true">standard_type</option> <option value="standard_value" selected="true">standard_value</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEMBL-ASSAY">CHEMBL-ASSAY</option> <option value="CHEMBL-DOCUMENT">CHEMBL-DOCUMENT</option> <option value="CHEMBL-MOLECULE">CHEMBL-MOLECULE</option> @@ -1170,7 +1158,7 @@ <option value="standard_value">standard_value</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1191,7 +1179,7 @@ </when> <when value="chembl-assay"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEMBL-ACTIVITY" selected="true">CHEMBL-ACTIVITY</option> <option value="CHEMBL-DOCUMENT" selected="true">CHEMBL-DOCUMENT</option> <option value="CHEMBL-TARGET" selected="true">CHEMBL-TARGET</option> @@ -1199,15 +1187,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEMBL-ACTIVITY">CHEMBL-ACTIVITY</option> <option value="CHEMBL-DOCUMENT">CHEMBL-DOCUMENT</option> <option value="CHEMBL-TARGET">CHEMBL-TARGET</option> @@ -1222,7 +1209,7 @@ <option value="tax_id">tax_id</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1243,20 +1230,19 @@ </when> <when value="chembl-document"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PUBMED" selected="true">PUBMED</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="title" selected="true">title</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PUBMED">PUBMED</option> <option value="doi">doi</option> <option value="domain_source">domain_source</option> @@ -1268,7 +1254,7 @@ <option value="year">year</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1289,7 +1275,7 @@ </when> <when value="chembl-molecule"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEMBL-ACTIVITY" selected="true">CHEMBL-ACTIVITY</option> <option value="alogp" selected="true">alogp</option> <option value="canonical_smiles" selected="true">canonical_smiles</option> @@ -1299,15 +1285,14 @@ <option value="id" selected="true">id</option> <option value="molecular_weight" selected="true">molecular_weight</option> <option value="polar_surface_area" selected="true">polar_surface_area</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEMBL-ACTIVITY">CHEMBL-ACTIVITY</option> <option value="alogp">alogp</option> <option value="canonical_smiles">canonical_smiles</option> @@ -1326,7 +1311,7 @@ <option value="structure_type">structure_type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1347,21 +1332,20 @@ </when> <when value="chembl-target"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEMBL-ASSAY" selected="true">CHEMBL-ASSAY</option> <option value="CHEMBL-TARGETCOMPONENTS" selected="true">CHEMBL-TARGETCOMPONENTS</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="organism" selected="true">organism</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEMBL-ASSAY">CHEMBL-ASSAY</option> <option value="CHEMBL-TARGETCOMPONENTS">CHEMBL-TARGETCOMPONENTS</option> <option value="domain_source">domain_source</option> @@ -1373,7 +1357,7 @@ <option value="tax_id">tax_id</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1394,7 +1378,7 @@ </when> <when value="chembl-target_component"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEMBL-TARGET" selected="true">CHEMBL-TARGET</option> <option value="accession" selected="true">accession</option> <option value="component_synonym" selected="true">component_synonym</option> @@ -1402,15 +1386,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEMBL-TARGET">CHEMBL-TARGET</option> <option value="accession">accession</option> <option value="component_synonym">component_synonym</option> @@ -1420,7 +1403,7 @@ <option value="id">id</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1441,7 +1424,7 @@ </when> <when value="coding_release"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AGRICOLA" selected="true">AGRICOLA</option> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="DICTYBASE" selected="true">DICTYBASE</option> @@ -1473,15 +1456,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGRICOLA">AGRICOLA</option> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="DICTYBASE">DICTYBASE</option> @@ -1541,7 +1523,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1562,7 +1544,7 @@ </when> <when value="coding_update"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AGRICOLA" selected="true">AGRICOLA</option> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="DOI" selected="true">DOI</option> @@ -1588,15 +1570,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGRICOLA">AGRICOLA</option> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="DOI">DOI</option> @@ -1650,7 +1631,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1671,7 +1652,7 @@ </when> <when value="dgva"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ENSEMBL" selected="true">ENSEMBL</option> <option value="NCBI_TAXID" selected="true">NCBI_TAXID</option> <option value="PUBMED" selected="true">PUBMED</option> @@ -1687,15 +1668,14 @@ <option value="variant_sample" selected="true">variant_sample</option> <option value="variant_type" selected="true">variant_type</option> <option value="variation_level" selected="true">variation_level</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ENSEMBL">ENSEMBL</option> <option value="NCBI_TAXID">NCBI_TAXID</option> <option value="PUBMED">PUBMED</option> @@ -1713,7 +1693,7 @@ <option value="variation_level">variation_level</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1734,7 +1714,7 @@ </when> <when value="atlas-genes-differential"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ATLAS" selected="true">ATLAS</option> <option value="EMBL" selected="true">EMBL</option> <option value="ENSFAMILY" selected="true">ENSFAMILY</option> @@ -1750,15 +1730,14 @@ <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> <option value="organism_part" selected="true">organism_part</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ATLAS">ATLAS</option> <option value="EMBL">EMBL</option> <option value="ENSFAMILY">ENSFAMILY</option> @@ -1847,7 +1826,7 @@ <option value="tumor_stage">tumor_stage</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1868,27 +1847,26 @@ </when> <when value="efo"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EFO" selected="true">EFO</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EFO">EFO</option> <option value="domain_source">domain_source</option> <option value="id">id</option> <option value="name">name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1909,7 +1887,7 @@ </when> <when value="ega"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EGA" selected="true">EGA</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXONOMY" selected="true">TAXONOMY</option> @@ -1920,15 +1898,14 @@ <option value="name" selected="true">name</option> <option value="omics_type" selected="true">omics_type</option> <option value="technology_type" selected="true">technology_type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EGA">EGA</option> <option value="PUBMED">PUBMED</option> <option value="TAXONOMY">TAXONOMY</option> @@ -1962,7 +1939,7 @@ <option value="url">url</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -1983,7 +1960,7 @@ </when> <when value="emdb"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="DOI" selected="true">DOI</option> <option value="EMDB" selected="true">EMDB</option> <option value="GO" selected="true">GO</option> @@ -2003,15 +1980,14 @@ <option value="obsoletedDate_date" selected="true">obsoletedDate_date</option> <option value="resolution" selected="true">resolution</option> <option value="specimenstate" selected="true">specimenstate</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="DOI">DOI</option> <option value="EMDB">EMDB</option> <option value="GO">GO</option> @@ -2047,7 +2023,7 @@ <option value="vitrificationinstrument">vitrificationinstrument</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -2068,7 +2044,7 @@ </when> <when value="epo"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option> <option value="TAXON" selected="true">TAXON</option> <option value="acc" selected="true">acc</option> @@ -2078,15 +2054,14 @@ <option value="id" selected="true">id</option> <option value="offset_end" selected="true">offset_end</option> <option value="offset_start" selected="true">offset_start</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="MD5">MD5</option> <option value="PATENT_NUMBER">PATENT_NUMBER</option> <option value="TAXON">TAXON</option> @@ -2110,7 +2085,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -2131,7 +2106,7 @@ </when> <when value="elixir-registry"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PMID" selected="true">PMID</option> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> @@ -2140,15 +2115,14 @@ <option value="mirror" selected="true">mirror</option> <option value="name" selected="true">name</option> <option value="version" selected="true">version</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="DOI">DOI</option> <option value="PMID">PMID</option> <option value="collection">collection</option> @@ -2175,7 +2149,7 @@ <option value="version">version</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -2196,7 +2170,7 @@ </when> <when value="ensembl_gene"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option> <option value="BIOGRID" selected="true">BIOGRID</option> <option value="CCDS" selected="true">CCDS</option> @@ -2300,15 +2274,14 @@ <option value="system_name" selected="true">system_name</option> <option value="transcript" selected="true">transcript</option> <option value="transcript_count" selected="true">transcript_count</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ARRAYEXPRESS">ARRAYEXPRESS</option> <option value="BIOGRID">BIOGRID</option> <option value="CCDS">CCDS</option> @@ -2453,7 +2426,7 @@ <option value="zfin_id_synonym">zfin_id_synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -2474,7 +2447,7 @@ </when> <when value="ensemblGenomes_gene"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AGD_GENE" selected="true">AGD_GENE</option> <option value="AGD_TRANSCRIPT" selected="true">AGD_TRANSCRIPT</option> <option value="ANT_GENOMES_PORTAL" selected="true">ANT_GENOMES_PORTAL</option> @@ -2612,15 +2585,14 @@ <option value="system_name" selected="true">system_name</option> <option value="transcript" selected="true">transcript</option> <option value="transcript_count" selected="true">transcript_count</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGD_GENE">AGD_GENE</option> <option value="AGD_TRANSCRIPT">AGD_TRANSCRIPT</option> <option value="AGI_GENE">AGI_GENE</option> @@ -2821,7 +2793,7 @@ <option value="transcript_version">transcript_version</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -2842,7 +2814,7 @@ </when> <when value="ensemblGenomes_genome"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option> <option value="assembly_accession" selected="true">assembly_accession</option> <option value="assembly_name" selected="true">assembly_name</option> @@ -2860,15 +2832,14 @@ <option value="name" selected="true">name</option> <option value="production_name" selected="true">production_name</option> <option value="strain" selected="true">strain</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option> <option value="alias">alias</option> <option value="assembly_accession">assembly_accession</option> @@ -2895,7 +2866,7 @@ <option value="strain">strain</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -2916,7 +2887,7 @@ </when> <when value="ensemblGenomes_seqRegion"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option> <option value="coord_system" selected="true">coord_system</option> <option value="domain_source" selected="true">domain_source</option> @@ -2927,15 +2898,14 @@ <option value="name" selected="true">name</option> <option value="production_name" selected="true">production_name</option> <option value="species" selected="true">species</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option> <option value="coord_system">coord_system</option> <option value="domain_source">domain_source</option> @@ -2947,7 +2917,7 @@ <option value="species">species</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -2968,7 +2938,7 @@ </when> <when value="ensemblGenomes_variant"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option> <option value="associated_gene" selected="true">associated_gene</option> <option value="description" selected="true">description</option> @@ -2982,15 +2952,14 @@ <option value="study" selected="true">study</option> <option value="synonym" selected="true">synonym</option> <option value="variation_source" selected="true">variation_source</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option> <option value="associated_gene">associated_gene</option> <option value="description">description</option> @@ -3007,7 +2976,7 @@ <option value="variation_source">variation_source</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3028,7 +2997,7 @@ </when> <when value="enzymeportal"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEBI" selected="true">CHEBI</option> <option value="CHEMBL" selected="true">CHEMBL</option> <option value="INTENZ" selected="true">INTENZ</option> @@ -3044,15 +3013,14 @@ <option value="name" selected="true">name</option> <option value="scientific_name" selected="true">scientific_name</option> <option value="status" selected="true">status</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEBI">CHEBI</option> <option value="CHEMBL">CHEMBL</option> <option value="INTENZ">INTENZ</option> @@ -3075,7 +3043,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3096,7 +3064,7 @@ </when> <when value="enzymeportal_enzymes"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEBI" selected="true">CHEBI</option> <option value="CHEMBL" selected="true">CHEMBL</option> <option value="INTENZ" selected="true">INTENZ</option> @@ -3118,15 +3086,14 @@ <option value="scientific_name" selected="true">scientific_name</option> <option value="synonym" selected="true">synonym</option> <option value="uniprot_name" selected="true">uniprot_name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEBI">CHEBI</option> <option value="CHEMBL">CHEMBL</option> <option value="INTENZ">INTENZ</option> @@ -3150,7 +3117,7 @@ <option value="uniprot_name">uniprot_name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3171,7 +3138,7 @@ </when> <when value="atlas-experiments"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option> <option value="ENSEMBL" selected="true">ENSEMBL</option> <option value="PUBMED" selected="true">PUBMED</option> @@ -3187,15 +3154,14 @@ <option value="omics_type" selected="true">omics_type</option> <option value="publication_date" selected="true">publication_date</option> <option value="sample_protocol" selected="true">sample_protocol</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ARRAYEXPRESS">ARRAYEXPRESS</option> <option value="ENSEMBL">ENSEMBL</option> <option value="PUBMED">PUBMED</option> @@ -3280,7 +3246,7 @@ <option value="tumor_stage">tumor_stage</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3301,7 +3267,7 @@ </when> <when value="gnps"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXONOMY" selected="true">TAXONOMY</option> <option value="dataset_file" selected="true">dataset_file</option> @@ -3316,15 +3282,14 @@ <option value="species" selected="true">species</option> <option value="submission_date" selected="true">submission_date</option> <option value="technology_type" selected="true">technology_type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PUBMED">PUBMED</option> <option value="TAXONOMY">TAXONOMY</option> <option value="acc">acc</option> @@ -3351,7 +3316,7 @@ <option value="technology_type">technology_type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3372,7 +3337,7 @@ </when> <when value="go"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ARACYC" selected="true">ARACYC</option> <option value="BIOCYC" selected="true">BIOCYC</option> <option value="BRENDA" selected="true">BRENDA</option> @@ -3454,15 +3419,14 @@ <option value="replaced_by" selected="true">replaced_by</option> <option value="subset" selected="true">subset</option> <option value="synonym" selected="true">synonym</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ARACYC">ARACYC</option> <option value="BIOCYC">BIOCYC</option> <option value="BRENDA">BRENDA</option> @@ -3570,7 +3534,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3591,7 +3555,7 @@ </when> <when value="gpcrdb"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="SWISSPROT" selected="true">SWISSPROT</option> <option value="TAXONOMY" selected="true">TAXONOMY</option> <option value="TREMBL" selected="true">TREMBL</option> @@ -3600,15 +3564,14 @@ <option value="gpcr-family" selected="true">gpcr-family</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="SWISSPROT">SWISSPROT</option> <option value="TAXONOMY">TAXONOMY</option> <option value="TREMBL">TREMBL</option> @@ -3619,7 +3582,7 @@ <option value="name">name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3640,7 +3603,7 @@ </when> <when value="gpmdb"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ENSEMBL" selected="true">ENSEMBL</option> <option value="MASSIVE" selected="true">MASSIVE</option> <option value="PRIDE" selected="true">PRIDE</option> @@ -3655,15 +3618,14 @@ <option value="publication" selected="true">publication</option> <option value="species" selected="true">species</option> <option value="submission_date" selected="true">submission_date</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ENSEMBL">ENSEMBL</option> <option value="MASSIVE">MASSIVE</option> <option value="PRIDE">PRIDE</option> @@ -3692,7 +3654,7 @@ <option value="submitter_mail">submitter_mail</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3713,7 +3675,7 @@ </when> <when value="hgnc"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CCDS" selected="true">CCDS</option> <option value="EMBL" selected="true">EMBL</option> <option value="ENSEMBL_GENE" selected="true">ENSEMBL_GENE</option> @@ -3739,15 +3701,14 @@ <option value="gd_status" selected="true">gd_status</option> <option value="id" selected="true">id</option> <option value="id_without_prefix" selected="true">id_without_prefix</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CCDS">CCDS</option> <option value="EMBL">EMBL</option> <option value="ENSEMBL_GENE">ENSEMBL_GENE</option> @@ -3775,7 +3736,7 @@ <option value="id_without_prefix">id_without_prefix</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3796,7 +3757,7 @@ </when> <when value="human_diseases"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="KW" selected="true">KW</option> <option value="MEDGEN" selected="true">MEDGEN</option> <option value="MESH" selected="true">MESH</option> @@ -3805,15 +3766,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="KW">KW</option> <option value="MEDGEN">MEDGEN</option> <option value="MESH">MESH</option> @@ -3827,7 +3787,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3848,7 +3808,7 @@ </when> <when value="imgt-hla"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EMBL-ENA" selected="true">EMBL-ENA</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="description" selected="true">description</option> @@ -3856,15 +3816,14 @@ <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> <option value="organism" selected="true">organism</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EMBL-ENA">EMBL-ENA</option> <option value="PUBMED">PUBMED</option> <option value="creation_date">creation_date</option> @@ -3876,7 +3835,7 @@ <option value="organism">organism</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3897,7 +3856,7 @@ </when> <when value="ipd-kir"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EMBL-ENA" selected="true">EMBL-ENA</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="description" selected="true">description</option> @@ -3905,15 +3864,14 @@ <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> <option value="organism" selected="true">organism</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EMBL-ENA">EMBL-ENA</option> <option value="PUBMED">PUBMED</option> <option value="creation_date">creation_date</option> @@ -3925,7 +3883,7 @@ <option value="organism">organism</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3946,7 +3904,7 @@ </when> <when value="ipd-mhc"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EMBL-ENA" selected="true">EMBL-ENA</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXONOMY" selected="true">TAXONOMY</option> @@ -3955,15 +3913,14 @@ <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> <option value="organism" selected="true">organism</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EMBL-ENA">EMBL-ENA</option> <option value="PUBMED">PUBMED</option> <option value="TAXONOMY">TAXONOMY</option> @@ -3975,7 +3932,7 @@ <option value="organism">organism</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -3996,7 +3953,7 @@ </when> <when value="intact-complexes"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEMBL" selected="true">CHEMBL</option> <option value="CHEMBL_TARGET" selected="true">CHEMBL_TARGET</option> <option value="DIP" selected="true">DIP</option> @@ -4023,15 +3980,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="3d-r-factors">3d-r-factors</option> <option value="CHEMBL">CHEMBL</option> <option value="CHEMBL_TARGET">CHEMBL_TARGET</option> @@ -4086,7 +4042,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4107,7 +4063,7 @@ </when> <when value="intact-experiments"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="BRENDA" selected="true">BRENDA</option> <option value="DOI" selected="true">DOI</option> <option value="EFO" selected="true">EFO</option> @@ -4132,15 +4088,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="BRENDA">BRENDA</option> <option value="DOI">DOI</option> <option value="EFO">EFO</option> @@ -4173,7 +4128,7 @@ <option value="participant_detection_method">participant_detection_method</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4194,7 +4149,7 @@ </when> <when value="intact-interactions"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AFCS" selected="true">AFCS</option> <option value="BRENDA" selected="true">BRENDA</option> <option value="CELL_ONTOLOGY" selected="true">CELL_ONTOLOGY</option> @@ -4230,15 +4185,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AFCS">AFCS</option> <option value="BRENDA">BRENDA</option> <option value="CELL_ONTOLOGY">CELL_ONTOLOGY</option> @@ -4282,7 +4236,7 @@ <option value="participant_detection_method">participant_detection_method</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4303,7 +4257,7 @@ </when> <when value="intact-interactors"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AFCS" selected="true">AFCS</option> <option value="CAMJEDB" selected="true">CAMJEDB</option> <option value="CAS_REGISTRY_NUMBER" selected="true">CAS_REGISTRY_NUMBER</option> @@ -4358,15 +4312,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AFCS">AFCS</option> <option value="BIND_SMID">BIND_SMID</option> <option value="CAMJEDB">CAMJEDB</option> @@ -4440,7 +4393,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4461,7 +4414,7 @@ </when> <when value="intenz"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CAS" selected="true">CAS</option> <option value="CHEBI" selected="true">CHEBI</option> <option value="EC" selected="true">EC</option> @@ -4476,15 +4429,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CAS">CAS</option> <option value="CHEBI">CHEBI</option> <option value="EC">EC</option> @@ -4507,7 +4459,7 @@ <option value="systematic_name">systematic_name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4528,7 +4480,7 @@ </when> <when value="interpro"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CATH" selected="true">CATH</option> <option value="CAZY" selected="true">CAZY</option> <option value="CDD" selected="true">CDD</option> @@ -4565,15 +4517,14 @@ <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> <option value="type" selected="true">type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CATH">CATH</option> <option value="CAZY">CAZY</option> <option value="CDD">CDD</option> @@ -4626,7 +4577,7 @@ <option value="type">type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4647,7 +4598,7 @@ </when> <when value="iprmatches"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CDD" selected="true">CDD</option> <option value="GENE3D" selected="true">GENE3D</option> <option value="HAMAP" selected="true">HAMAP</option> @@ -4668,15 +4619,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CDD">CDD</option> <option value="GENE3D">GENE3D</option> <option value="HAMAP">HAMAP</option> @@ -4700,7 +4650,7 @@ <option value="signatureName">signatureName</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4721,7 +4671,7 @@ </when> <when value="jpo"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option> <option value="TAXON" selected="true">TAXON</option> <option value="acc" selected="true">acc</option> @@ -4731,15 +4681,14 @@ <option value="id" selected="true">id</option> <option value="offset_end" selected="true">offset_end</option> <option value="offset_start" selected="true">offset_start</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PATENT_NUMBER">PATENT_NUMBER</option> <option value="TAXON">TAXON</option> <option value="acc">acc</option> @@ -4757,7 +4706,7 @@ <option value="references">references</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4778,7 +4727,7 @@ </when> <when value="kipo"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option> <option value="TAXON" selected="true">TAXON</option> <option value="acc" selected="true">acc</option> @@ -4788,15 +4737,14 @@ <option value="id" selected="true">id</option> <option value="offset_end" selected="true">offset_end</option> <option value="offset_start" selected="true">offset_start</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PATENT_NUMBER">PATENT_NUMBER</option> <option value="TAXON">TAXON</option> <option value="acc">acc</option> @@ -4814,7 +4762,7 @@ <option value="references">references</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4835,7 +4783,7 @@ </when> <when value="lrg"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CCDS" selected="true">CCDS</option> <option value="ENSEMBL" selected="true">ENSEMBL</option> <option value="GENEID" selected="true">GENEID</option> @@ -4871,15 +4819,14 @@ <option value="organism" selected="true">organism</option> <option value="status" selected="true">status</option> <option value="transcript_source" selected="true">transcript_source</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CCDS">CCDS</option> <option value="ENSEMBL">ENSEMBL</option> <option value="GENEID">GENEID</option> @@ -4903,7 +4850,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4924,7 +4871,7 @@ </when> <when value="large-assembly"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="DOI" selected="true">DOI</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXON" selected="true">TAXON</option> @@ -4932,15 +4879,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="DOI">DOI</option> <option value="MD5">MD5</option> <option value="PROJECT">PROJECT</option> @@ -4965,7 +4911,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -4986,20 +4932,19 @@ </when> <when value="pdbechem"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="acc" selected="true">acc</option> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="acc">acc</option> <option value="comp_synonyms">comp_synonyms</option> <option value="description">description</option> @@ -5013,7 +4958,7 @@ <option value="weight">weight</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5034,7 +4979,7 @@ </when> <when value="medline"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="MESH_DESCRIPTOR_NAME" selected="true">MESH_DESCRIPTOR_NAME</option> <option value="ORCID" selected="true">ORCID</option> <option value="author" selected="true">author</option> @@ -5049,15 +4994,14 @@ <option value="pagination" selected="true">pagination</option> <option value="publication_date" selected="true">publication_date</option> <option value="volume" selected="true">volume</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="MESH_DESCRIPTOR_NAME">MESH_DESCRIPTOR_NAME</option> <option value="ORCID">ORCID</option> <option value="affiliation">affiliation</option> @@ -5079,7 +5023,7 @@ <option value="volume">volume</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5100,22 +5044,21 @@ </when> <when value="merops_clan"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PFAM" selected="true">PFAM</option> <option value="SCOP" selected="true">SCOP</option> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PFAM">PFAM</option> <option value="SCOP">SCOP</option> <option value="acc">acc</option> @@ -5138,7 +5081,7 @@ <option value="subclans">subclans</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5159,7 +5102,7 @@ </when> <when value="merops_family"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CATH" selected="true">CATH</option> <option value="HOMSTRAD" selected="true">HOMSTRAD</option> <option value="HSSP" selected="true">HSSP</option> @@ -5171,15 +5114,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CATH">CATH</option> <option value="HOMSTRAD">HOMSTRAD</option> <option value="HSSP">HSSP</option> @@ -5210,7 +5152,7 @@ <option value="subfamilies">subfamilies</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5231,7 +5173,7 @@ </when> <when value="merops_id"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EMBL" selected="true">EMBL</option> <option value="EMBLCDS" selected="true">EMBLCDS</option> <option value="ENSEMBL" selected="true">ENSEMBL</option> @@ -5247,15 +5189,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EMBL">EMBL</option> <option value="EMBLCDS">EMBLCDS</option> <option value="ENSEMBL">ENSEMBL</option> @@ -5290,7 +5231,7 @@ <option value="structure">structure</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5311,20 +5252,19 @@ </when> <when value="mesh"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="MESH_PHARMA" selected="true">MESH_PHARMA</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="MESH_PHARMA">MESH_PHARMA</option> <option value="annotation">annotation</option> <option value="creation_date">creation_date</option> @@ -5342,7 +5282,7 @@ <option value="qualifierui">qualifierui</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5363,7 +5303,7 @@ </when> <when value="massive"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXONOMY" selected="true">TAXONOMY</option> <option value="dataset_file" selected="true">dataset_file</option> @@ -5378,15 +5318,14 @@ <option value="species" selected="true">species</option> <option value="submission_date" selected="true">submission_date</option> <option value="technology_type" selected="true">technology_type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PUBMED">PUBMED</option> <option value="TAXONOMY">TAXONOMY</option> <option value="acc">acc</option> @@ -5408,7 +5347,7 @@ <option value="technology_type">technology_type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5429,7 +5368,7 @@ </when> <when value="metabolights"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEBI" selected="true">CHEBI</option> <option value="HMDB" selected="true">HMDB</option> <option value="KEGG" selected="true">KEGG</option> @@ -5452,15 +5391,14 @@ <option value="study_status" selected="true">study_status</option> <option value="submission_date" selected="true">submission_date</option> <option value="technology_type" selected="true">technology_type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="3d_desi_imaging_ms_dataset_of_a_human_colorectal_adenocarcinoma_protocol">3d_desi_imaging_ms_dataset_of_a_human_colorectal_adenocarcinoma_protocol</option> <option value="3d_maldi_imaging_ms_dataset_of_a_human_oral_squamous_cell_carcinoma_protocol">3d_maldi_imaging_ms_dataset_of_a_human_oral_squamous_cell_carcinoma_protocol</option> <option value="3d_maldi_imaging_ms_dataset_of_a_mouse_kidney_protocol">3d_maldi_imaging_ms_dataset_of_a_mouse_kidney_protocol</option> @@ -5529,7 +5467,7 @@ <option value="technology_type">technology_type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5550,7 +5488,7 @@ </when> <when value="metabolights_dataset"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEBI" selected="true">CHEBI</option> <option value="HMDB" selected="true">HMDB</option> <option value="KEGG" selected="true">KEGG</option> @@ -5572,15 +5510,14 @@ <option value="study_status" selected="true">study_status</option> <option value="submission_date" selected="true">submission_date</option> <option value="technology_type" selected="true">technology_type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="3d_desi_imaging_ms_dataset_of_a_human_colorectal_adenocarcinoma_protocol">3d_desi_imaging_ms_dataset_of_a_human_colorectal_adenocarcinoma_protocol</option> <option value="3d_maldi_imaging_ms_dataset_of_a_human_oral_squamous_cell_carcinoma_protocol">3d_maldi_imaging_ms_dataset_of_a_human_oral_squamous_cell_carcinoma_protocol</option> <option value="3d_maldi_imaging_ms_dataset_of_a_mouse_kidney_protocol">3d_maldi_imaging_ms_dataset_of_a_mouse_kidney_protocol</option> @@ -5652,7 +5589,7 @@ <option value="technology_type">technology_type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5673,7 +5610,7 @@ </when> <when value="metabolome_express"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEBI" selected="true">CHEBI</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="description" selected="true">description</option> @@ -5686,15 +5623,14 @@ <option value="publication" selected="true">publication</option> <option value="publication_date" selected="true">publication_date</option> <option value="study_factor" selected="true">study_factor</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEBI">CHEBI</option> <option value="PUBMED">PUBMED</option> <option value="acc">acc</option> @@ -5736,7 +5672,7 @@ <option value="treatmentid">treatmentid</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5757,7 +5693,7 @@ </when> <when value="metabolomics_workbench"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEBI" selected="true">CHEBI</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXONOMY" selected="true">TAXONOMY</option> @@ -5775,15 +5711,14 @@ <option value="submission_date" selected="true">submission_date</option> <option value="technology_type" selected="true">technology_type</option> <option value="tissue" selected="true">tissue</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEBI">CHEBI</option> <option value="PUBMED">PUBMED</option> <option value="TAXONOMY">TAXONOMY</option> @@ -5816,7 +5751,7 @@ <option value="tissue">tissue</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5837,24 +5772,23 @@ </when> <when value="hmmer_hmm"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="content" selected="true">content</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > - <option value="domain_source">domain_source</option> - <option value="id">id</option> - </param> - <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> + <option value="domain_source">domain_source</option> + <option value="id">id</option> + </param> + <conditional name="comp_operation"> + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5875,22 +5809,21 @@ </when> <when value="hmmer_seq"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ENSEMBL" selected="true">ENSEMBL</option> <option value="PDB" selected="true">PDB</option> <option value="UNIPROT" selected="true">UNIPROT</option> <option value="content" selected="true">content</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ENSEMBL">ENSEMBL</option> <option value="PDB">PDB</option> <option value="UNIPROT">UNIPROT</option> @@ -5898,7 +5831,7 @@ <option value="id">id</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5919,7 +5852,7 @@ </when> <when value="metagenomics_projects"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="METAGENOMICS_RUNS" selected="true">METAGENOMICS_RUNS</option> <option value="METAGENOMICS_SAMPLES" selected="true">METAGENOMICS_SAMPLES</option> <option value="biome_name" selected="true">biome_name</option> @@ -5927,15 +5860,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="METAGENOMICS_RUNS">METAGENOMICS_RUNS</option> <option value="METAGENOMICS_SAMPLES">METAGENOMICS_SAMPLES</option> <option value="biome">biome</option> @@ -5950,7 +5882,7 @@ <option value="releaseDate_date">releaseDate_date</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -5971,7 +5903,7 @@ </when> <when value="metagenomics_runs"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="GO" selected="true">GO</option> <option value="INTERPRO" selected="true">INTERPRO</option> <option value="METAGENOMICS_PROJECTS" selected="true">METAGENOMICS_PROJECTS</option> @@ -5987,15 +5919,14 @@ <option value="project_name" selected="true">project_name</option> <option value="sample_name" selected="true">sample_name</option> <option value="temperature" selected="true">temperature</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="GO">GO</option> <option value="INTERPRO">INTERPRO</option> <option value="METAGENOMICS_PROJECTS">METAGENOMICS_PROJECTS</option> @@ -6019,7 +5950,7 @@ <option value="temperature">temperature</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6040,7 +5971,7 @@ </when> <when value="metagenomics_samples"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ENVO" selected="true">ENVO</option> <option value="METAGENOMICS_PROJECTS" selected="true">METAGENOMICS_PROJECTS</option> <option value="METAGENOMICS_RUNS" selected="true">METAGENOMICS_RUNS</option> @@ -6051,15 +5982,14 @@ <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> <option value="project_name" selected="true">project_name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ENVO">ENVO</option> <option value="METAGENOMICS_PROJECTS">METAGENOMICS_PROJECTS</option> <option value="METAGENOMICS_RUNS">METAGENOMICS_RUNS</option> @@ -6098,7 +6028,7 @@ <option value="temperature">temperature</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6119,20 +6049,19 @@ </when> <when value="nrnl1"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EM_PAT" selected="true">EM_PAT</option> <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EM_PAT">EM_PAT</option> <option value="PATENT_NUMBER">PATENT_NUMBER</option> <option value="domain_source">domain_source</option> @@ -6142,7 +6071,7 @@ <option value="md5">md5</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6163,21 +6092,20 @@ </when> <when value="nrnl2"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EM_PAT" selected="true">EM_PAT</option> <option value="PATENTFAMILIES" selected="true">PATENTFAMILIES</option> <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EM_PAT">EM_PAT</option> <option value="PATENTFAMILIES">PATENTFAMILIES</option> <option value="PATENT_NUMBER">PATENT_NUMBER</option> @@ -6190,7 +6118,7 @@ <option value="patent_priority_date">patent_priority_date</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6211,7 +6139,7 @@ </when> <when value="nrpl1"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EPOP" selected="true">EPOP</option> <option value="JPOP" selected="true">JPOP</option> <option value="KPOP" selected="true">KPOP</option> @@ -6219,15 +6147,14 @@ <option value="USPOP" selected="true">USPOP</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EPOP">EPOP</option> <option value="JPOP">JPOP</option> <option value="KPOP">KPOP</option> @@ -6240,7 +6167,7 @@ <option value="md5">md5</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6261,7 +6188,7 @@ </when> <when value="nrpl2"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EPOP" selected="true">EPOP</option> <option value="JPOP" selected="true">JPOP</option> <option value="KPOP" selected="true">KPOP</option> @@ -6270,15 +6197,14 @@ <option value="USPOP" selected="true">USPOP</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EPOP">EPOP</option> <option value="JPOP">JPOP</option> <option value="KPOP">KPOP</option> @@ -6294,7 +6220,7 @@ <option value="patent_priority_date">patent_priority_date</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6315,7 +6241,7 @@ </when> <when value="non-coding_release"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AGRICOLA" selected="true">AGRICOLA</option> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="DOI" selected="true">DOI</option> @@ -6338,15 +6264,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGRICOLA">AGRICOLA</option> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="DOI">DOI</option> @@ -6395,7 +6320,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6416,7 +6341,7 @@ </when> <when value="non-coding_update"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AGRICOLA" selected="true">AGRICOLA</option> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="DOI" selected="true">DOI</option> @@ -6430,15 +6355,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGRICOLA">AGRICOLA</option> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="DOI">DOI</option> @@ -6478,7 +6402,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6499,21 +6423,20 @@ </when> <when value="omim"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="OMIM" selected="true">OMIM</option> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="title" selected="true">title</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="OMIM">OMIM</option> <option value="allelic_variations">allelic_variations</option> <option value="alternative_title">alternative_title</option> @@ -6527,7 +6450,7 @@ <option value="title">title</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6548,7 +6471,7 @@ </when> <when value="pdbe"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CATH" selected="true">CATH</option> <option value="EC" selected="true">EC</option> <option value="GO" selected="true">GO</option> @@ -6564,15 +6487,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CATH">CATH</option> <option value="EC">EC</option> <option value="GO">GO</option> @@ -6601,7 +6523,7 @@ <option value="source_organism">source_organism</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6622,7 +6544,7 @@ </when> <when value="pride"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ENSEMBL" selected="true">ENSEMBL</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXONOMY" selected="true">TAXONOMY</option> @@ -6649,15 +6571,14 @@ <option value="submitter_keywords" selected="true">submitter_keywords</option> <option value="technology_type" selected="true">technology_type</option> <option value="tissue" selected="true">tissue</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ENSEMBL">ENSEMBL</option> <option value="PUBMED">PUBMED</option> <option value="TAXONOMY">TAXONOMY</option> @@ -6705,7 +6626,7 @@ <option value="tissue">tissue</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6726,19 +6647,18 @@ </when> <when value="patentFamilies"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PATENT_NUMBER">PATENT_NUMBER</option> <option value="domain_source">domain_source</option> <option value="id">id</option> @@ -6746,7 +6666,7 @@ <option value="patent_priority">patent_priority</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6767,7 +6687,7 @@ </when> <when value="patentdb"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EPO" selected="true">EPO</option> <option value="IPC" selected="true">IPC</option> <option value="description" selected="true">description</option> @@ -6776,15 +6696,14 @@ <option value="name" selected="true">name</option> <option value="patent_number" selected="true">patent_number</option> <option value="publication_date" selected="true">publication_date</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EPO">EPO</option> <option value="IPC">IPC</option> <option value="MC">MC</option> @@ -6801,7 +6720,7 @@ <option value="type">type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6822,7 +6741,7 @@ </when> <when value="ebiweb_people"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="domain_source" selected="true">domain_source</option> <option value="email" selected="true">email</option> <option value="fax" selected="true">fax</option> @@ -6835,15 +6754,14 @@ <option value="room" selected="true">room</option> <option value="surname" selected="true">surname</option> <option value="tel" selected="true">tel</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="bio">bio</option> <option value="domain_source">domain_source</option> <option value="email">email</option> @@ -6858,7 +6776,7 @@ <option value="tel">tel</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6879,7 +6797,7 @@ </when> <when value="peptide_atlas"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ENSEMBL" selected="true">ENSEMBL</option> <option value="FLYBASE" selected="true">FLYBASE</option> <option value="INSECTBASE" selected="true">INSECTBASE</option> @@ -6910,15 +6828,14 @@ <option value="species" selected="true">species</option> <option value="technology_type" selected="true">technology_type</option> <option value="tissue" selected="true">tissue</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ENSEMBL">ENSEMBL</option> <option value="FLYBASE">FLYBASE</option> <option value="INSECTBASE">INSECTBASE</option> @@ -6969,7 +6886,7 @@ <option value="tissue">tissue</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -6990,7 +6907,7 @@ </when> <when value="pfam"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="GO" selected="true">GO</option> <option value="INTERPRO" selected="true">INTERPRO</option> <option value="acc" selected="true">acc</option> @@ -6999,15 +6916,14 @@ <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> <option value="type" selected="true">type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="GO">GO</option> <option value="INTERPRO">INTERPRO</option> <option value="acc">acc</option> @@ -7026,7 +6942,7 @@ <option value="type">type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7047,7 +6963,7 @@ </when> <when value="pombase"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EC_NUMBER" selected="true">EC_NUMBER</option> <option value="EMBL" selected="true">EMBL</option> <option value="ENTREZGENE" selected="true">ENTREZGENE</option> @@ -7085,15 +7001,14 @@ <option value="system_name" selected="true">system_name</option> <option value="transcript" selected="true">transcript</option> <option value="transcript_count" selected="true">transcript_count</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EC_NUMBER">EC_NUMBER</option> <option value="EMBL">EMBL</option> <option value="ENSEMBLVARIATION">ENSEMBLVARIATION</option> @@ -7148,7 +7063,7 @@ <option value="transcript">transcript</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7169,7 +7084,7 @@ </when> <when value="rnacentral"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="DICTYBASE" selected="true">DICTYBASE</option> <option value="DOI" selected="true">DOI</option> <option value="ECO" selected="true">ECO</option> @@ -7217,15 +7132,14 @@ <option value="pub_title" selected="true">pub_title</option> <option value="rna_type" selected="true">rna_type</option> <option value="species" selected="true">species</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="DICTYBASE">DICTYBASE</option> <option value="DOI">DOI</option> <option value="ECO">ECO</option> @@ -7284,7 +7198,7 @@ <option value="species">species</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7305,7 +7219,7 @@ </when> <when value="reactome"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ARACYC" selected="true">ARACYC</option> <option value="BIOMODELS_DATABASE" selected="true">BIOMODELS_DATABASE</option> <option value="CAS" selected="true">CAS</option> @@ -7355,15 +7269,14 @@ <option value="species" selected="true">species</option> <option value="stid" selected="true">stid</option> <option value="type" selected="true">type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ARACYC">ARACYC</option> <option value="BIOMODELS_DATABASE">BIOMODELS_DATABASE</option> <option value="CAS">CAS</option> @@ -7429,7 +7342,7 @@ <option value="type">type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7450,7 +7363,7 @@ </when> <when value="sra-experiment"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="PROJECT" selected="true">PROJECT</option> <option value="SAMPLE" selected="true">SAMPLE</option> @@ -7461,15 +7374,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="PROJECT">PROJECT</option> <option value="SAMPLE">SAMPLE</option> @@ -7491,7 +7403,7 @@ <option value="library_strategy">library_strategy</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7512,7 +7424,7 @@ </when> <when value="sra-run"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="SRA-EXPERIMENT" selected="true">SRA-EXPERIMENT</option> <option value="SRA-SAMPLE" selected="true">SRA-SAMPLE</option> <option value="SRA-STUDY" selected="true">SRA-STUDY</option> @@ -7520,15 +7432,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="SRA-EXPERIMENT">SRA-EXPERIMENT</option> <option value="SRA-SAMPLE">SRA-SAMPLE</option> <option value="SRA-STUDY">SRA-STUDY</option> @@ -7541,7 +7452,7 @@ <option value="id">id</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7562,7 +7473,7 @@ </when> <when value="ebiweb_resources"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> @@ -7571,15 +7482,14 @@ <option value="short_name" selected="true">short_name</option> <option value="thumbnail" selected="true">thumbnail</option> <option value="url" selected="true">url</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="activity">activity</option> <option value="category">category</option> <option value="cluster">cluster</option> @@ -7593,7 +7503,7 @@ <option value="short_name">short_name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7614,7 +7524,7 @@ </when> <when value="rhea"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="CHEBI" selected="true">CHEBI</option> <option value="CITATION" selected="true">CITATION</option> <option value="ECOCYC" selected="true">ECOCYC</option> @@ -7630,15 +7540,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="CHEBI">CHEBI</option> <option value="CITATION">CITATION</option> <option value="ECOCYC">ECOCYC</option> @@ -7656,7 +7565,7 @@ <option value="name">name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7677,21 +7586,20 @@ </when> <when value="sbo"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="SBO" selected="true">SBO</option> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="SBO">SBO</option> <option value="comment">comment</option> <option value="description">description</option> @@ -7702,7 +7610,7 @@ <option value="synonym">synonym</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7723,7 +7631,7 @@ </when> <when value="sra-sample"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="SRA-SUBMISSION" selected="true">SRA-SUBMISSION</option> <option value="TAXON" selected="true">TAXON</option> @@ -7733,15 +7641,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="scientific_name" selected="true">scientific_name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="ENA-CHECKLIST">ENA-CHECKLIST</option> <option value="SRA-SUBMISSION">SRA-SUBMISSION</option> @@ -7759,7 +7666,7 @@ <option value="secondary_id">secondary_id</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7780,7 +7687,7 @@ </when> <when value="emblrelease_standard"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AGRICOLA" selected="true">AGRICOLA</option> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="CABRI" selected="true">CABRI</option> @@ -7839,15 +7746,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGRICOLA">AGRICOLA</option> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="CABRI">CABRI</option> @@ -7940,7 +7846,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -7961,7 +7867,7 @@ </when> <when value="emblnew_standard"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AGRICOLA" selected="true">AGRICOLA</option> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="CABRI" selected="true">CABRI</option> @@ -8001,15 +7907,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGRICOLA">AGRICOLA</option> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="CABRI">CABRI</option> @@ -8083,7 +7988,7 @@ <option value="topology">topology</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8104,7 +8009,7 @@ </when> <when value="ebiweb_corporate"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="content" selected="true">content</option> <option value="content_signature" selected="true">content_signature</option> <option value="description" selected="true">description</option> @@ -8113,15 +8018,14 @@ <option value="mime_type" selected="true">mime_type</option> <option value="name" selected="true">name</option> <option value="namespace" selected="true">namespace</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="author">author</option> <option value="content">content</option> <option value="content_signature">content_signature</option> @@ -8138,7 +8042,7 @@ <option value="namespace">namespace</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8159,22 +8063,21 @@ </when> <when value="project"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PUBMED" selected="true">PUBMED</option> <option value="TAXON" selected="true">TAXON</option> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PUBMED">PUBMED</option> <option value="TAXON">TAXON</option> <option value="acc">acc</option> @@ -8187,7 +8090,7 @@ <option value="strain">strain</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8208,7 +8111,7 @@ </when> <when value="sra-study"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PROJECT" selected="true">PROJECT</option> <option value="PUBMED" selected="true">PUBMED</option> <option value="SRA-STUDY" selected="true">SRA-STUDY</option> @@ -8218,15 +8121,14 @@ <option value="existing_study_type" selected="true">existing_study_type</option> <option value="id" selected="true">id</option> <option value="new_study_type" selected="true">new_study_type</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PROJECT">PROJECT</option> <option value="PUBMED">PUBMED</option> <option value="SRA-STUDY">SRA-STUDY</option> @@ -8243,7 +8145,7 @@ <option value="new_study_type">new_study_type</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8264,19 +8166,18 @@ </when> <when value="sra-submission"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="acc">acc</option> <option value="alias">alias</option> <option value="center_name">center_name</option> @@ -8285,7 +8186,7 @@ <option value="id">id</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8306,7 +8207,7 @@ </when> <when value="taxonomy"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="TAXONOMY" selected="true">TAXONOMY</option> <option value="acronym" selected="true">acronym</option> <option value="anamorph" selected="true">anamorph</option> @@ -8324,15 +8225,14 @@ <option value="offset_end" selected="true">offset_end</option> <option value="offset_start" selected="true">offset_start</option> <option value="synonym" selected="true">synonym</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="TAXONOMY">TAXONOMY</option> <option value="acronym">acronym</option> <option value="anamorph">anamorph</option> @@ -8356,7 +8256,7 @@ <option value="teleomorph">teleomorph</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8377,7 +8277,7 @@ </when> <when value="tsa_masters"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option> <option value="PROJECT" selected="true">PROJECT</option> <option value="PUBMED" selected="true">PUBMED</option> @@ -8387,15 +8287,14 @@ <option value="description" selected="true">description</option> <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="BIOSAMPLE">BIOSAMPLE</option> <option value="PROJECT">PROJECT</option> <option value="PUBMED">PUBMED</option> @@ -8422,7 +8321,7 @@ <option value="strain">strain</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8443,7 +8342,7 @@ </when> <when value="treefam"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ENSEMBL" selected="true">ENSEMBL</option> <option value="HGNC" selected="true">HGNC</option> <option value="PFAM" selected="true">PFAM</option> @@ -8454,15 +8353,14 @@ <option value="domain_source" selected="true">domain_source</option> <option value="id" selected="true">id</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ENSEMBL">ENSEMBL</option> <option value="HGNC">HGNC</option> <option value="PFAM">PFAM</option> @@ -8478,7 +8376,7 @@ <option value="name">name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8499,7 +8397,7 @@ </when> <when value="uspto"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option> <option value="acc" selected="true">acc</option> <option value="description" selected="true">description</option> @@ -8508,15 +8406,14 @@ <option value="id" selected="true">id</option> <option value="offset_end" selected="true">offset_end</option> <option value="offset_start" selected="true">offset_start</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="PATENT_NUMBER">PATENT_NUMBER</option> <option value="acc">acc</option> <option value="creation_date">creation_date</option> @@ -8532,7 +8429,7 @@ <option value="sequence_version">sequence_version</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8553,7 +8450,7 @@ </when> <when value="uniparc"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="EMBL" selected="true">EMBL</option> <option value="EMBLWGS" selected="true">EMBLWGS</option> <option value="EMBL_CON" selected="true">EMBL_CON</option> @@ -8593,15 +8490,14 @@ <option value="gene_name" selected="true">gene_name</option> <option value="id" selected="true">id</option> <option value="length" selected="true">length</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="EMBL">EMBL</option> <option value="EMBLWGS">EMBLWGS</option> <option value="EMBL_CON">EMBL_CON</option> @@ -8647,7 +8543,7 @@ <option value="uniprotkb_exclusion">uniprotkb_exclusion</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -8668,7 +8564,7 @@ </when> <when value="uniprot"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="AGRICOLA" selected="true">AGRICOLA</option> <option value="ALLERGOME" selected="true">ALLERGOME</option> <option value="ARACHNOSERVER" selected="true">ARACHNOSERVER</option> @@ -8838,15 +8734,14 @@ <option value="length" selected="true">length</option> <option value="organism_scientific_name" selected="true">organism_scientific_name</option> <option value="status" selected="true">status</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="AGRICOLA">AGRICOLA</option> <option value="ALLERGOME">ALLERGOME</option> <option value="ARACHNOSERVER">ARACHNOSERVER</option> @@ -9042,7 +8937,7 @@ <option value="status">status</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -9063,7 +8958,7 @@ </when> <when value="uniref100"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="TAXONOMY" selected="true">TAXONOMY</option> <option value="UNIPARC" selected="true">UNIPARC</option> <option value="UNIPROT" selected="true">UNIPROT</option> @@ -9073,15 +8968,14 @@ <option value="id" selected="true">id</option> <option value="length" selected="true">length</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="TAXONOMY">TAXONOMY</option> <option value="UNIPARC">UNIPARC</option> <option value="UNIPROT">UNIPROT</option> @@ -9101,7 +8995,7 @@ <option value="name">name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -9122,7 +9016,7 @@ </when> <when value="uniref50"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="TAXONOMY" selected="true">TAXONOMY</option> <option value="UNIPARC" selected="true">UNIPARC</option> <option value="UNIPROT" selected="true">UNIPROT</option> @@ -9132,15 +9026,14 @@ <option value="id" selected="true">id</option> <option value="length" selected="true">length</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="TAXONOMY">TAXONOMY</option> <option value="UNIPARC">UNIPARC</option> <option value="UNIPROT">UNIPROT</option> @@ -9160,7 +9053,7 @@ <option value="name">name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -9181,7 +9074,7 @@ </when> <when value="uniref90"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="TAXONOMY" selected="true">TAXONOMY</option> <option value="UNIPARC" selected="true">UNIPARC</option> <option value="UNIPROT" selected="true">UNIPROT</option> @@ -9191,15 +9084,14 @@ <option value="id" selected="true">id</option> <option value="length" selected="true">length</option> <option value="name" selected="true">name</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="TAXONOMY">TAXONOMY</option> <option value="UNIPARC">UNIPARC</option> <option value="UNIPROT">UNIPROT</option> @@ -9219,7 +9111,7 @@ <option value="name">name</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option> @@ -9240,7 +9132,7 @@ </when> <when value="wormbaseParasite"> - <param name="fields" type="select" label="Fields to extract" multiple="true"> + <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract"> <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option> <option value="EMBL" selected="true">EMBL</option> <option value="ENSEMBL_ORTHOLOG" selected="true">ENSEMBL_ORTHOLOG</option> @@ -9290,15 +9182,14 @@ <option value="system_name" selected="true">system_name</option> <option value="transcript" selected="true">transcript</option> <option value="transcript_count" selected="true">transcript_count</option> - <validator type="no_options" message="Please select at least one field" /> - </param> - <repeat name="queries" title="Add a query"> - <param name="combination_operation" type="select" label="Combination operation" > - <option value="AND">AND</option> - <option value="OR">OR</option> - <option value="NOT">NOT</option> - </param> - <param name="query_field" type="select" label="Fields" > + </param> + <repeat name="queries" title="Add a query"> + <param name="combination_operation" type="select" label="Combination operation"> + <option value="AND">AND</option> + <option value="OR">OR</option> + <option value="NOT">NOT</option> + </param> + <param name="query_field" type="select" label="Fields"> <option value="ARRAYEXPRESS">ARRAYEXPRESS</option> <option value="EMBL">EMBL</option> <option value="ENSEMBL_ORTHOLOG">ENSEMBL_ORTHOLOG</option> @@ -9353,7 +9244,7 @@ <option value="transcript">transcript</option> </param> <conditional name="comp_operation"> - <param name="operation" type="select" label="Comparison operation" > + <param name="operation" type="select" label="Comparison operation"> <option value="equal">equal</option> <option value="not">not</option> <option value="range">range</option>