Mercurial > repos > iuc > ebi_metagenomics_run_downloader

changeset 3:a1ef6c88ee37 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ebi_tools commit 31d1c92a4c12b6a78693dc5091a08536a075285e
author iuc
date Thu, 09 Feb 2017 12:02:47 -0500
parents 6155fa39a899
children
files ebeye_urllib.py generate_macros.py macros.xml
diffstat 3 files changed, 95 insertions(+), 28 deletions(-) [+]
line wrap: on
line diff
--- a/ebeye_urllib.py	Sat Jan 21 14:40:54 2017 -0500
+++ b/ebeye_urllib.py	Thu Feb 09 12:02:47 2017 -0500
@@ -5,6 +5,9 @@
 # and distributed under the Apache License
 # ======================================================================
 # Load libraries
+
+from __future__ import print_function
+
 import os
 import platform
 import re
@@ -269,7 +272,7 @@
     printDebugMessage('getEntries', 'End', 1)
     p = re.compile('http')
     fieldURL = p.sub('https', fieldURL)
-    print fieldURL
+    print(fieldURL)
 
 
 if __name__ == '__main__':
--- a/generate_macros.py	Sat Jan 21 14:40:54 2017 -0500
+++ b/generate_macros.py	Thu Feb 09 12:02:47 2017 -0500
@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/env python
 
 import ebeye_urllib
 
--- a/macros.xml	Sat Jan 21 14:40:54 2017 -0500
+++ b/macros.xml	Thu Feb 09 12:02:47 2017 -0500
@@ -53,6 +53,7 @@
                 <option value="imgt-hla">IMGT/HLA</option>
                 <option value="ipd-kir">IPD-KIR</option>
                 <option value="ipd-mhc">IPD-MHC</option>
+                <option value="identifiers_registry">Identifiers.org registry</option>
                 <option value="intact-complexes">IntAct Complexes</option>
                 <option value="intact-experiments">IntAct Experiments</option>
                 <option value="intact-interactions">IntAct Interactions</option>
@@ -495,7 +496,6 @@
                 <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract">
                     <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
                     <option value="DOI" selected="true">DOI</option>
-                    <option value="EC" selected="true">EC</option>
                     <option value="EMBLCDS" selected="true">EMBLCDS</option>
                     <option value="ENA" selected="true">ENA</option>
                     <option value="ENA-CON" selected="true">ENA-CON</option>
@@ -524,7 +524,6 @@
                     <param name="query_field" type="select" label="Fields">
                         <option value="BIOSAMPLE">BIOSAMPLE</option>
                         <option value="DOI">DOI</option>
-                        <option value="EC">EC</option>
                         <option value="EMBLCDS">EMBLCDS</option>
                         <option value="EMBLCDS_version">EMBLCDS_version</option>
                         <option value="ENA">ENA</option>
@@ -547,7 +546,6 @@
                         <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
                         <option value="WORMBASE">WORMBASE</option>
                         <option value="acc">acc</option>
-                        <option value="bio_material">bio_material</option>
                         <option value="creation_date">creation_date</option>
                         <option value="culture_collection">culture_collection</option>
                         <option value="data_class">data_class</option>
@@ -1751,7 +1749,6 @@
                         <option value="UNIPROT">UNIPROT</option>
                         <option value="age">age</option>
                         <option value="biopsy_site">biopsy_site</option>
-                        <option value="biotic_plant_treatment">biotic_plant_treatment</option>
                         <option value="block">block</option>
                         <option value="cell_cycle_stage">cell_cycle_stage</option>
                         <option value="cell_line">cell_line</option>
@@ -3952,6 +3949,73 @@
                 </repeat>
             </when>
 
+            <when value="identifiers_registry">
+                <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract">
+                    <option value="COLLECTION" selected="true">COLLECTION</option>
+                    <option value="PUBMED" selected="true">PUBMED</option>
+                    <option value="description" selected="true">description</option>
+                    <option value="domain_source" selected="true">domain_source</option>
+                    <option value="id" selected="true">id</option>
+                    <option value="institution" selected="true">institution</option>
+                    <option value="location" selected="true">location</option>
+                    <option value="name" selected="true">name</option>
+                    <option value="obsolete" selected="true">obsolete</option>
+                    <option value="official" selected="true">official</option>
+                    <option value="pattern" selected="true">pattern</option>
+                    <option value="tag" selected="true">tag</option>
+                    <option value="type" selected="true">type</option>
+                    <option value="uptime" selected="true">uptime</option>
+                    <option value="uptime-range" selected="true">uptime-range</option>
+                    <option value="uri" selected="true">uri</option>
+                </param>
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <param name="query_field" type="select" label="Fields">
+                        <option value="COLLECTION">COLLECTION</option>
+                        <option value="DOI">DOI</option>
+                        <option value="PUBMED">PUBMED</option>
+                        <option value="description">description</option>
+                        <option value="domain_source">domain_source</option>
+                        <option value="id">id</option>
+                        <option value="institution">institution</option>
+                        <option value="location">location</option>
+                        <option value="name">name</option>
+                        <option value="namespace">namespace</option>
+                        <option value="obsolete">obsolete</option>
+                        <option value="official">official</option>
+                        <option value="pattern">pattern</option>
+                        <option value="provider_code">provider_code</option>
+                        <option value="tag">tag</option>
+                        <option value="type">type</option>
+                        <option value="uptime">uptime</option>
+                        <option value="uptime-range">uptime-range</option>
+                        <option value="uri">uri</option>
+                    </param>
+                    <conditional name="comp_operation">
+                        <param name="operation" type="select" label="Comparison operation">
+                            <option value="equal">equal</option>
+                            <option value="not">not</option>
+                            <option value="range">range</option>
+                        </param>
+                        <when value="equal">
+                            <param name="query_text" type="text" label="Searched term"/>
+                        </when>
+                        <when value="not">
+                            <param name="query_text" type="text" label="Searched term"/>
+                            <param name="not_query_text" type="text" label="Limiting term"/>
+                        </when>
+                        <when value="range">
+                            <param name="min" type="text" label="From"/>
+                            <param name="max" type="text" label="To"/>
+                        </when>
+                    </conditional>
+                </repeat>
+            </when>
+
             <when value="intact-complexes">
                 <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract">
                     <option value="CHEMBL" selected="true">CHEMBL</option>
@@ -3968,7 +4032,6 @@
                     <option value="INTERPRO" selected="true">INTERPRO</option>
                     <option value="MATRIXDB" selected="true">MATRIXDB</option>
                     <option value="MINT" selected="true">MINT</option>
-                    <option value="OMIM" selected="true">OMIM</option>
                     <option value="ORPHANET" selected="true">ORPHANET</option>
                     <option value="PDBE" selected="true">PDBE</option>
                     <option value="PROTEIN_ONTOLOGY" selected="true">PROTEIN_ONTOLOGY</option>
@@ -4003,7 +4066,6 @@
                         <option value="INTERPRO">INTERPRO</option>
                         <option value="MATRIXDB">MATRIXDB</option>
                         <option value="MINT">MINT</option>
-                        <option value="OMIM">OMIM</option>
                         <option value="ORPHANET">ORPHANET</option>
                         <option value="PDBE">PDBE</option>
                         <option value="PROTEIN_ONTOLOGY">PROTEIN_ONTOLOGY</option>
@@ -5374,7 +5436,6 @@
                     <option value="KEGG" selected="true">KEGG</option>
                     <option value="METABOLIGHTS" selected="true">METABOLIGHTS</option>
                     <option value="MTBLS" selected="true">MTBLS</option>
-                    <option value="PUBCHEM" selected="true">PUBCHEM</option>
                     <option value="PUBMED" selected="true">PUBMED</option>
                     <option value="dataset_file" selected="true">dataset_file</option>
                     <option value="description" selected="true">description</option>
@@ -5409,7 +5470,6 @@
                         <option value="KEGG">KEGG</option>
                         <option value="METABOLIGHTS">METABOLIGHTS</option>
                         <option value="MTBLS">MTBLS</option>
-                        <option value="PUBCHEM">PUBCHEM</option>
                         <option value="PUBMED">PUBMED</option>
                         <option value="apodisation_zero_filling_and_fourier_transformation_protocol">apodisation_zero_filling_and_fourier_transformation_protocol</option>
                         <option value="author">author</option>
@@ -5417,14 +5477,12 @@
                         <option value="batch_correction_protocol">batch_correction_protocol</option>
                         <option value="chromatography_protocol">chromatography_protocol</option>
                         <option value="data_analysis_protocol">data_analysis_protocol</option>
-                        <option value="data_normalization_protocol">data_normalization_protocol</option>
                         <option value="data_transformation_protocol">data_transformation_protocol</option>
                         <option value="description">description</option>
                         <option value="domain_source">domain_source</option>
                         <option value="extraction_protocol">extraction_protocol</option>
                         <option value="formula">formula</option>
                         <option value="full_dataset_link">full_dataset_link</option>
-                        <option value="gc_ms_protocol">gc_ms_protocol</option>
                         <option value="glog_transformation_protocol">glog_transformation_protocol</option>
                         <option value="growth_conditions_protocol">growth_conditions_protocol</option>
                         <option value="histology_protocol">histology_protocol</option>
@@ -5432,8 +5490,6 @@
                         <option value="inchi">inchi</option>
                         <option value="instrument_platform">instrument_platform</option>
                         <option value="iupac">iupac</option>
-                        <option value="labeling_protocol">labeling_protocol</option>
-                        <option value="lc_ms_protocol">lc_ms_protocol</option>
                         <option value="mass_calibration_and_sim_stitching_protocol">mass_calibration_and_sim_stitching_protocol</option>
                         <option value="mass_spec_protocol">mass_spec_protocol</option>
                         <option value="metabolite_id_protocol">metabolite_id_protocol</option>
@@ -5448,12 +5504,14 @@
                         <option value="organism_part">organism_part</option>
                         <option value="pqn_normalisation_protocol">pqn_normalisation_protocol</option>
                         <option value="preparation_protocol">preparation_protocol</option>
+                        <option value="preprocessing_protocol">preprocessing_protocol</option>
                         <option value="publication">publication</option>
                         <option value="publication_date">publication_date</option>
                         <option value="replicate_filtering_protocol">replicate_filtering_protocol</option>
                         <option value="repository">repository</option>
                         <option value="sample_collection_protocol">sample_collection_protocol</option>
                         <option value="sample_filtering_including_tic_filtering_blank_filtering_and_missing_value_filtering_protocol">sample_filtering_including_tic_filtering_blank_filtering_and_missing_value_filtering_protocol</option>
+                        <option value="sample_preparation_protocol">sample_preparation_protocol</option>
                         <option value="software_processing_protocol">software_processing_protocol</option>
                         <option value="spectral_cleaning_protocol">spectral_cleaning_protocol</option>
                         <option value="study">study</option>
@@ -5811,7 +5869,7 @@
             <when value="hmmer_seq">
                 <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract">
                     <option value="ENSEMBL" selected="true">ENSEMBL</option>
-                    <option value="PDB" selected="true">PDB</option>
+                    <option value="PDBE" selected="true">PDBE</option>
                     <option value="UNIPROT" selected="true">UNIPROT</option>
                     <option value="content" selected="true">content</option>
                     <option value="domain_source" selected="true">domain_source</option>
@@ -5825,7 +5883,7 @@
                     </param>
                     <param name="query_field" type="select" label="Fields">
                         <option value="ENSEMBL">ENSEMBL</option>
-                        <option value="PDB">PDB</option>
+                        <option value="PDBE">PDBE</option>
                         <option value="UNIPROT">UNIPROT</option>
                         <option value="domain_source">domain_source</option>
                         <option value="id">id</option>
@@ -6346,7 +6404,6 @@
                     <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
                     <option value="DOI" selected="true">DOI</option>
                     <option value="EMBL" selected="true">EMBL</option>
-                    <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
                     <option value="PUBMED" selected="true">PUBMED</option>
                     <option value="SILVA-LSU" selected="true">SILVA-LSU</option>
                     <option value="SILVA-SSU" selected="true">SILVA-SSU</option>
@@ -6368,7 +6425,6 @@
                         <option value="DOI">DOI</option>
                         <option value="EMBL">EMBL</option>
                         <option value="MD5">MD5</option>
-                        <option value="PATENT_NUMBER">PATENT_NUMBER</option>
                         <option value="PROJECT">PROJECT</option>
                         <option value="PUBMED">PUBMED</option>
                         <option value="SILVA-LSU">SILVA-LSU</option>
@@ -7092,6 +7148,7 @@
                     <option value="GO" selected="true">GO</option>
                     <option value="GREENGENES" selected="true">GREENGENES</option>
                     <option value="GTRNADB" selected="true">GTRNADB</option>
+                    <option value="HGNC" selected="true">HGNC</option>
                     <option value="LNCIPEDIA" selected="true">LNCIPEDIA</option>
                     <option value="LNCRNADB" selected="true">LNCRNADB</option>
                     <option value="MIRBASE" selected="true">MIRBASE</option>
@@ -7147,6 +7204,7 @@
                         <option value="GO">GO</option>
                         <option value="GREENGENES">GREENGENES</option>
                         <option value="GTRNADB">GTRNADB</option>
+                        <option value="HGNC">HGNC</option>
                         <option value="LNCIPEDIA">LNCIPEDIA</option>
                         <option value="LNCRNADB">LNCRNADB</option>
                         <option value="MIRBASE">MIRBASE</option>
@@ -7221,7 +7279,6 @@
             <when value="reactome">
                 <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract">
                     <option value="ARACYC" selected="true">ARACYC</option>
-                    <option value="BIOMODELS_DATABASE" selected="true">BIOMODELS_DATABASE</option>
                     <option value="CAS" selected="true">CAS</option>
                     <option value="CHEBI" selected="true">CHEBI</option>
                     <option value="COMPOUND" selected="true">COMPOUND</option>
@@ -7232,12 +7289,12 @@
                     <option value="EMBL" selected="true">EMBL</option>
                     <option value="ENSEMBL" selected="true">ENSEMBL</option>
                     <option value="GENECARDS" selected="true">GENECARDS</option>
+                    <option value="GLYCAN" selected="true">GLYCAN</option>
                     <option value="GO" selected="true">GO</option>
                     <option value="HMDB_METABOLITE" selected="true">HMDB_METABOLITE</option>
                     <option value="HMDB_PROTEIN" selected="true">HMDB_PROTEIN</option>
                     <option value="INTACT" selected="true">INTACT</option>
                     <option value="KEGG_GENE" selected="true">KEGG_GENE</option>
-                    <option value="KEGG_GLYCAN" selected="true">KEGG_GLYCAN</option>
                     <option value="KNAPSACK" selected="true">KNAPSACK</option>
                     <option value="MIRBASE" selected="true">MIRBASE</option>
                     <option value="NCBI_NUCLEOTIDE" selected="true">NCBI_NUCLEOTIDE</option>
@@ -7278,7 +7335,6 @@
                     </param>
                     <param name="query_field" type="select" label="Fields">
                         <option value="ARACYC">ARACYC</option>
-                        <option value="BIOMODELS_DATABASE">BIOMODELS_DATABASE</option>
                         <option value="CAS">CAS</option>
                         <option value="CHEBI">CHEBI</option>
                         <option value="COMPOUND">COMPOUND</option>
@@ -7289,12 +7345,12 @@
                         <option value="EMBL">EMBL</option>
                         <option value="ENSEMBL">ENSEMBL</option>
                         <option value="GENECARDS">GENECARDS</option>
+                        <option value="GLYCAN">GLYCAN</option>
                         <option value="GO">GO</option>
                         <option value="HMDB_METABOLITE">HMDB_METABOLITE</option>
                         <option value="HMDB_PROTEIN">HMDB_PROTEIN</option>
                         <option value="INTACT">INTACT</option>
                         <option value="KEGG_GENE">KEGG_GENE</option>
-                        <option value="KEGG_GLYCAN">KEGG_GLYCAN</option>
                         <option value="KNAPSACK">KNAPSACK</option>
                         <option value="MIRBASE">MIRBASE</option>
                         <option value="NCBI_NUCLEOTIDE">NCBI_NUCLEOTIDE</option>
@@ -7474,7 +7530,11 @@
 
             <when value="ebiweb_resources">
                 <param name="fields" type="select" multiple="true" optional="false" label="Fields to extract">
+                    <option value="activity" selected="true">activity</option>
+                    <option value="category" selected="true">category</option>
+                    <option value="cluster" selected="true">cluster</option>
                     <option value="description" selected="true">description</option>
+                    <option value="domain" selected="true">domain</option>
                     <option value="domain_source" selected="true">domain_source</option>
                     <option value="id" selected="true">id</option>
                     <option value="logo" selected="true">logo</option>
@@ -7871,6 +7931,7 @@
                     <option value="AGRICOLA" selected="true">AGRICOLA</option>
                     <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
                     <option value="CABRI" selected="true">CABRI</option>
+                    <option value="CCAP" selected="true">CCAP</option>
                     <option value="COMPARE-REFGENOME" selected="true">COMPARE-REFGENOME</option>
                     <option value="DOI" selected="true">DOI</option>
                     <option value="EC" selected="true">EC</option>
@@ -7888,6 +7949,7 @@
                     <option value="HGNC" selected="true">HGNC</option>
                     <option value="INTERPRO" selected="true">INTERPRO</option>
                     <option value="IPD-MHC" selected="true">IPD-MHC</option>
+                    <option value="ISHAM-ITS" selected="true">ISHAM-ITS</option>
                     <option value="MGI" selected="true">MGI</option>
                     <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
                     <option value="PDB" selected="true">PDB</option>
@@ -7902,6 +7964,7 @@
                     <option value="UNIPROTKB_SWISS-PROT" selected="true">UNIPROTKB_SWISS-PROT</option>
                     <option value="UNIPROTKB_TREMBL" selected="true">UNIPROTKB_TREMBL</option>
                     <option value="UNITE" selected="true">UNITE</option>
+                    <option value="VBASE2" selected="true">VBASE2</option>
                     <option value="ZFIN" selected="true">ZFIN</option>
                     <option value="acc" selected="true">acc</option>
                     <option value="description" selected="true">description</option>
@@ -7918,6 +7981,7 @@
                         <option value="AGRICOLA">AGRICOLA</option>
                         <option value="BIOSAMPLE">BIOSAMPLE</option>
                         <option value="CABRI">CABRI</option>
+                        <option value="CCAP">CCAP</option>
                         <option value="COMPARE-REFGENOME">COMPARE-REFGENOME</option>
                         <option value="DOI">DOI</option>
                         <option value="EC">EC</option>
@@ -7941,6 +8005,7 @@
                         <option value="IMGT_LIGM">IMGT_LIGM</option>
                         <option value="INTERPRO">INTERPRO</option>
                         <option value="IPD-MHC">IPD-MHC</option>
+                        <option value="ISHAM-ITS">ISHAM-ITS</option>
                         <option value="MD5">MD5</option>
                         <option value="MGI">MGI</option>
                         <option value="PATENT_NUMBER">PATENT_NUMBER</option>
@@ -7959,6 +8024,7 @@
                         <option value="UNIPROTKB_SWISS-PROT">UNIPROTKB_SWISS-PROT</option>
                         <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
                         <option value="UNITE">UNITE</option>
+                        <option value="VBASE2">VBASE2</option>
                         <option value="ZFIN">ZFIN</option>
                         <option value="acc">acc</option>
                         <option value="bio_material">bio_material</option>
@@ -8696,6 +8762,7 @@
                     <option value="REPRODUCTION-2DPAGE" selected="true">REPRODUCTION-2DPAGE</option>
                     <option value="RGD" selected="true">RGD</option>
                     <option value="SABIO-RK" selected="true">SABIO-RK</option>
+                    <option value="SFLD" selected="true">SFLD</option>
                     <option value="SGD" selected="true">SGD</option>
                     <option value="SIGNALINK" selected="true">SIGNALINK</option>
                     <option value="SIGNOR" selected="true">SIGNOR</option>
@@ -8879,6 +8946,7 @@
                         <option value="SAAS">SAAS</option>
                         <option value="SABIO-RK">SABIO-RK</option>
                         <option value="SAM">SAM</option>
+                        <option value="SFLD">SFLD</option>
                         <option value="SGD">SGD</option>
                         <option value="SIGNALINK">SIGNALINK</option>
                         <option value="SIGNOR">SIGNOR</option>
@@ -9147,21 +9215,19 @@
                     <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
                     <option value="PDB" selected="true">PDB</option>
                     <option value="PROTEIN_ID" selected="true">PROTEIN_ID</option>
-                    <option value="REACTOME" selected="true">REACTOME</option>
                     <option value="REFSEQ_MRNA" selected="true">REFSEQ_MRNA</option>
                     <option value="REFSEQ_MRNA_PREDICTED" selected="true">REFSEQ_MRNA_PREDICTED</option>
                     <option value="REFSEQ_NCRNA" selected="true">REFSEQ_NCRNA</option>
                     <option value="REFSEQ_PEPTIDE" selected="true">REFSEQ_PEPTIDE</option>
                     <option value="REFSEQ_PEPTIDE_PREDICTED" selected="true">REFSEQ_PEPTIDE_PREDICTED</option>
-                    <option value="SCHISTODB" selected="true">SCHISTODB</option>
                     <option value="UNIGENE" selected="true">UNIGENE</option>
                     <option value="UNIPARC" selected="true">UNIPARC</option>
-                    <option value="UNIPATHWAY" selected="true">UNIPATHWAY</option>
                     <option value="UNIPROT" selected="true">UNIPROT</option>
                     <option value="WIKIGENE" selected="true">WIKIGENE</option>
                     <option value="WORMBASE_GENE" selected="true">WORMBASE_GENE</option>
                     <option value="WORMBASE_GSEQNAME" selected="true">WORMBASE_GSEQNAME</option>
                     <option value="WORMBASE_LOCUS" selected="true">WORMBASE_LOCUS</option>
+                    <option value="WORMBASE_ORTHOLOG" selected="true">WORMBASE_ORTHOLOG</option>
                     <option value="WORMBASE_TRANSCRIPT" selected="true">WORMBASE_TRANSCRIPT</option>
                     <option value="WORMPEP_ID" selected="true">WORMPEP_ID</option>
                     <option value="description" selected="true">description</option>
@@ -9204,21 +9270,19 @@
                         <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
                         <option value="PDB">PDB</option>
                         <option value="PROTEIN_ID">PROTEIN_ID</option>
-                        <option value="REACTOME">REACTOME</option>
                         <option value="REFSEQ_MRNA">REFSEQ_MRNA</option>
                         <option value="REFSEQ_MRNA_PREDICTED">REFSEQ_MRNA_PREDICTED</option>
                         <option value="REFSEQ_NCRNA">REFSEQ_NCRNA</option>
                         <option value="REFSEQ_PEPTIDE">REFSEQ_PEPTIDE</option>
                         <option value="REFSEQ_PEPTIDE_PREDICTED">REFSEQ_PEPTIDE_PREDICTED</option>
-                        <option value="SCHISTODB">SCHISTODB</option>
                         <option value="UNIGENE">UNIGENE</option>
                         <option value="UNIPARC">UNIPARC</option>
-                        <option value="UNIPATHWAY">UNIPATHWAY</option>
                         <option value="UNIPROT">UNIPROT</option>
                         <option value="WIKIGENE">WIKIGENE</option>
                         <option value="WORMBASE_GENE">WORMBASE_GENE</option>
                         <option value="WORMBASE_GSEQNAME">WORMBASE_GSEQNAME</option>
                         <option value="WORMBASE_LOCUS">WORMBASE_LOCUS</option>
+                        <option value="WORMBASE_ORTHOLOG">WORMBASE_ORTHOLOG</option>
                         <option value="WORMBASE_TRANSCRIPT">WORMBASE_TRANSCRIPT</option>
                         <option value="WORMPEP_ID">WORMPEP_ID</option>
                         <option value="collection">collection</option>