Mercurial > repos > iuc > edger

changeset 9:6e53e565fc6a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 8c4b8f8711df0a4d6fa98fa8a6f91b977395d62c"
author iuc
date Sat, 26 Jun 2021 19:09:53 +0000
parents 3d89af8a44f0
children df0c8d0a5992
files edger.R edger.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/edger.R	Thu Jun 03 19:34:18 2021 +0000
+++ b/edger.R	Sat Jun 26 19:09:53 2021 +0000
@@ -277,7 +277,7 @@
 
   # Process factors
   if (is.null(opt$factInput)) {
-    factordata <- read.table(opt$factFile, header = TRUE, sep = "\t", strip.white = TRUE)
+    factordata <- read.table(opt$factFile, header = TRUE, sep = "\t", strip.white = TRUE, stringsAsFactors = TRUE)
     # check samples names match
     if (!any(factordata[, 1] %in% colnames(counts))) {
       stop("Sample IDs in factors file and count matrix don't match")
--- a/edger.xml	Thu Jun 03 19:34:18 2021 +0000
+++ b/edger.xml	Sat Jun 26 19:09:53 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="edger" name="edgeR" version="3.34.0">
+<tool id="edger" name="edgeR" version="3.34.0+galaxy1">
     <description>
         Perform differential expression of count data
     </description>