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annotate test-data/ranked-h-gene-sets-IL13-IL13Ant.txt @ 0:a8a083193440 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
author iuc
date Thu, 25 Jan 2018 02:23:23 -0500
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a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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1 Rank ID GeneSet BroadUrl Description PubMedID NumGenes Contributor p.value p.adj vote.rank avg.rank med.rank min.pvalue min.rank avg.logfc avg.logfc.dir direction significance camera globaltest ora
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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2 1 M5890 HALLMARK_TNFA_SIGNALING_VIA_NFKB http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_TNFA_SIGNALING_VIA_NFKB.html Genes regulated by NF-kB in response to TNF [GeneID=7124]. 181/200 Arthur Liberzon 3.69843944783645e-09 6.16406574639408e-08 5 10 3 1.23281315079864e-09 1 0.588637134386457 -0.680899745245093 -1 20.6439242624481 3 26 1
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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3 2 M5895 HALLMARK_WNT_BETA_CATENIN_SIGNALING http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_WNT_BETA_CATENIN_SIGNALING.html Genes up-regulated by activation of WNT signaling through accumulation of beta catenin CTNNB1 [GeneID=1499]. 35/42 Arthur Liberzon 0.0440661300653943 0.169485115636132 5 6.66666666666667 5 0.014909910604653 2 0.412052814817513 0.432421220391424 1 1.53878145448751 13 2 5
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
iuc
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4 3 M5928 HALLMARK_MYC_TARGETS_V2 http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_MYC_TARGETS_V2.html A subgroup of genes regulated by MYC - version 2 (v2). 53/58 Arthur Liberzon 4.79647602359615e-07 4.79647602359616e-06 5 12.3333333333333 5 1.59882559682303e-07 3 0.342550383131631 0.340902674013207 1 8.85877098589516 5 3 29
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
iuc
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5 4 M5903 HALLMARK_NOTCH_SIGNALING http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_NOTCH_SIGNALING.html Genes up-regulated by activation of Notch signaling. 28/32 Arthur Liberzon 0.271 0.586487804394038 40 16.6666666666667 11 0.1 1 0.623573196381421 0.703516699577552 1 0.69638194408607 38 1 11
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
iuc
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6 5 M5932 HALLMARK_INFLAMMATORY_RESPONSE http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_INFLAMMATORY_RESPONSE.html Genes defining inflammatory response. 175/200 Arthur Liberzon 2.56397784509287e-08 3.20497230636609e-07 5 15.6666666666667 12 8.54659289002046e-09 4 0.724979825102502 -0.798585365579773 -1 22.9015712966849 4 12 31