comparison ena_upload.xml @ 13:ea5e944f447d draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit d87ac7944bca149b5ae3fc33d445b6c25051ab26

12:29648e5e83a8

<tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT">
    <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description>
    <macros>
        <token name="@TOOL_VERSION@">0.7.1</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <import>samples_macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">ena-upload-cli</requirement>
    </requirements>

    --study '$studies_table_path'
    --run '$runs_table_path'
    --sample '$samples_table_path'
#elif $action_options.input_format_conditional.input_format == "isa_json":
    --isa_json ./isa_json_input.json
    --isa_assay_stream '$isa_assay_stream'
#end if
#if $action_options.input_format_conditional.input_format == "build_tables":
    #if $action_options.input_format_conditional.conditional_viral_metadata.viral_sample == "True":
        --checklist ERC000033
    #end if

13:ea5e944f447d

<tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT">
    <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description>
    <macros>
        <token name="@TOOL_VERSION@">0.7.1</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <import>samples_macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">ena-upload-cli</requirement>
    </requirements>

    --study '$studies_table_path'
    --run '$runs_table_path'
    --sample '$samples_table_path'
#elif $action_options.input_format_conditional.input_format == "isa_json":
    --isa_json ./isa_json_input.json
    --isa_assay_stream '$action_options.input_format_conditional.isa_assay_stream'
#end if
#if $action_options.input_format_conditional.input_format == "build_tables":
    #if $action_options.input_format_conditional.conditional_viral_metadata.viral_sample == "True":
        --checklist ERC000033
    #end if