comparison ena_upload.xml @ 14:5cb6146337d8 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit ab38fa3d5ec06729c1efa86240ec57b8143b21ed

13:ea5e944f447d

<tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT">
    <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description>
    <macros>
        <token name="@TOOL_VERSION@">0.7.1</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <import>samples_macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">ena-upload-cli</requirement>

            <assert_command>
                <has_text_matching expression="ena-upload-cli"/>
                <has_text_matching expression="--data '1.fastqsanger.gz' '2.fastqsanger.gz'"/>
                <has_text_matching expression="--action 'modify' --center 'Some research center'"/>
                <has_text_matching expression="--checklist ERC000033"/>
                <not_has_text text="add" />
            </assert_command>
        </test>
        <!--Test 9: isa JSON input of NON-VIRAL samples-->
        <test expect_num_outputs="5">
            <conditional name="action_options">

14:5cb6146337d8

<tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT">
    <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description>
    <macros>
        <token name="@TOOL_VERSION@">0.7.3</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <import>samples_macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">ena-upload-cli</requirement>

            <assert_command>
                <has_text_matching expression="ena-upload-cli"/>
                <has_text_matching expression="--data '1.fastqsanger.gz' '2.fastqsanger.gz'"/>
                <has_text_matching expression="--action 'modify' --center 'Some research center'"/>
                <has_text_matching expression="--checklist ERC000033"/>
                <not_has_text text="--action 'add'" />
            </assert_command>
        </test>
        <!--Test 9: isa JSON input of NON-VIRAL samples-->
        <test expect_num_outputs="5">
            <conditional name="action_options">