Mercurial > repos > iuc > enasearch_retrieve_taxons
comparison search_macros.xml @ 0:34d21959dc25 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
| author | iuc |
|---|---|
| date | Tue, 29 Aug 2017 04:14:07 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:34d21959dc25 |
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| 1 <?xml version="1.0" ?> | |
| 2 <macros> | |
| 3 <xml name="analysis_fields"> | |
| 4 <option value="analysis_accession">analysis_accession</option> | |
| 5 <option value="study_accession">study_accession</option> | |
| 6 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 7 <option value="sample_accession">sample_accession</option> | |
| 8 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 9 <option value="analysis_title">analysis_title</option> | |
| 10 <option value="analysis_type">analysis_type</option> | |
| 11 <option value="center_name">center_name</option> | |
| 12 <option value="first_public">first_public</option> | |
| 13 <option value="last_updated">last_updated</option> | |
| 14 <option value="study_title">study_title</option> | |
| 15 <option value="tax_id">tax_id</option> | |
| 16 <option value="scientific_name">scientific_name</option> | |
| 17 <option value="analysis_alias">analysis_alias</option> | |
| 18 <option value="study_alias">study_alias</option> | |
| 19 <option value="submitted_bytes">submitted_bytes</option> | |
| 20 <option value="submitted_md5">submitted_md5</option> | |
| 21 <option value="submitted_ftp">submitted_ftp</option> | |
| 22 <option value="submitted_aspera">submitted_aspera</option> | |
| 23 <option value="submitted_galaxy">submitted_galaxy</option> | |
| 24 <option value="sample_alias">sample_alias</option> | |
| 25 <option value="broker_name">broker_name</option> | |
| 26 </xml> | |
| 27 <xml name="display_options"> | |
| 28 <option value="xml">Results are displayed in XML format. Supported by all ENA data classes.</option> | |
| 29 <option value="text">Results are displayed in text format. Supported only by assembled and annotated sequence data classes.</option> | |
| 30 <option value="fastq">Results are displayed in fastq format. Supported only by Trace data class.</option> | |
| 31 <option value="html">Results are displayed in HTML format. Supported by all ENA data classes. HTML is the default display format if no other display option has been specified.</option> | |
| 32 <option value="report">Results are displayed as a tab separated report</option> | |
| 33 <option value="fasta">Results are displayed in fasta format. Supported by assembled and annotated sequence and Trace data classes.</option> | |
| 34 </xml> | |
| 35 <xml name="when_display_options"> | |
| 36 <when value="xml"> | |
| 37 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 38 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 39 </when> | |
| 40 <when value="text"> | |
| 41 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 42 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 43 </when> | |
| 44 <when value="fastq"> | |
| 45 <param name="range_start" argument="--subseq_range" type="integer" optional="true" label="Start integer for subsequences"/> | |
| 46 <param name="range_stop" argument="--subseq_range" type="integer" optional="true" label="Stop integer for subsequences"/> | |
| 47 </when> | |
| 48 <when value="html"> | |
| 49 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 50 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 51 </when> | |
| 52 <when value="report"> | |
| 53 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 54 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 55 </when> | |
| 56 <when value="fasta"> | |
| 57 <param name="range_start" argument="--subseq_range" type="integer" optional="true" label="Start integer for subsequences"/> | |
| 58 <param name="range_stop" argument="--subseq_range" type="integer" optional="true" label="Stop integer for subsequences"/> | |
| 59 </when> | |
| 60 </xml> | |
| 61 <xml name="run_fields"> | |
| 62 <option value="study_accession">study_accession</option> | |
| 63 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 64 <option value="sample_accession">sample_accession</option> | |
| 65 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 66 <option value="experiment_accession">experiment_accession</option> | |
| 67 <option value="run_accession">run_accession</option> | |
| 68 <option value="submission_accession">submission_accession</option> | |
| 69 <option value="tax_id">tax_id</option> | |
| 70 <option value="scientific_name">scientific_name</option> | |
| 71 <option value="instrument_platform">instrument_platform</option> | |
| 72 <option value="instrument_model">instrument_model</option> | |
| 73 <option value="library_name">library_name</option> | |
| 74 <option value="nominal_length">nominal_length</option> | |
| 75 <option value="library_layout">library_layout</option> | |
| 76 <option value="library_strategy">library_strategy</option> | |
| 77 <option value="library_source">library_source</option> | |
| 78 <option value="library_selection">library_selection</option> | |
| 79 <option value="read_count">read_count</option> | |
| 80 <option value="base_count">base_count</option> | |
| 81 <option value="center_name">center_name</option> | |
| 82 <option value="first_public">first_public</option> | |
| 83 <option value="last_updated">last_updated</option> | |
| 84 <option value="experiment_title">experiment_title</option> | |
| 85 <option value="study_title">study_title</option> | |
| 86 <option value="study_alias">study_alias</option> | |
| 87 <option value="experiment_alias">experiment_alias</option> | |
| 88 <option value="run_alias">run_alias</option> | |
| 89 <option value="fastq_bytes">fastq_bytes</option> | |
| 90 <option value="fastq_md5">fastq_md5</option> | |
| 91 <option value="fastq_ftp">fastq_ftp</option> | |
| 92 <option value="fastq_aspera">fastq_aspera</option> | |
| 93 <option value="fastq_galaxy">fastq_galaxy</option> | |
| 94 <option value="submitted_bytes">submitted_bytes</option> | |
| 95 <option value="submitted_md5">submitted_md5</option> | |
| 96 <option value="submitted_ftp">submitted_ftp</option> | |
| 97 <option value="submitted_aspera">submitted_aspera</option> | |
| 98 <option value="submitted_galaxy">submitted_galaxy</option> | |
| 99 <option value="submitted_format">submitted_format</option> | |
| 100 <option value="sra_bytes">sra_bytes</option> | |
| 101 <option value="sra_md5">sra_md5</option> | |
| 102 <option value="sra_ftp">sra_ftp</option> | |
| 103 <option value="sra_aspera">sra_aspera</option> | |
| 104 <option value="sra_galaxy">sra_galaxy</option> | |
| 105 <option value="cram_index_ftp">cram_index_ftp</option> | |
| 106 <option value="cram_index_aspera">cram_index_aspera</option> | |
| 107 <option value="cram_index_galaxy">cram_index_galaxy</option> | |
| 108 <option value="sample_alias">sample_alias</option> | |
| 109 <option value="broker_name">broker_name</option> | |
| 110 </xml> | |
| 111 <xml name="taxonomy_results"> | |
| 112 <option value="noncoding_release">Non-coding sequences (Release)</option> | |
| 113 <option value="sequence_release">Nucleotide Sequences (Release)</option> | |
| 114 <option value="study">Studies</option> | |
| 115 <option value="read_trace">Capillary Traces in Trace Archive</option> | |
| 116 <option value="coding_release">Protein-coding sequences (Release)</option> | |
| 117 <option value="sample">Samples</option> | |
| 118 <option value="read_run">Raw reads</option> | |
| 119 <option value="read_study">Raw reads (grouped by study)</option> | |
| 120 <option value="read_experiment">Raw reads (grouped by experiment)</option> | |
| 121 <option value="analysis">Nucleotide sequence analyses</option> | |
| 122 <option value="sequence_update">Nucleotide Sequences (Update)</option> | |
| 123 <option value="coding_update">Protein-coding sequences (Update)</option> | |
| 124 <option value="analysis_study">Nucleotide sequence analyses (grouped by study)</option> | |
| 125 <option value="noncoding_update">Non-coding sequences (Update)</option> | |
| 126 </xml> | |
| 127 <xml name="free_text_search"> | |
| 128 <conditional name="res"> | |
| 129 <param argument="--result" type="select" label="Result to return"> | |
| 130 <option value="noncoding_release">Non-coding sequences (Release)</option> | |
| 131 <option value="assembly">Genome assemblies</option> | |
| 132 <option value="sequence_release">Nucleotide sequences (Release)</option> | |
| 133 <option value="wgs_set">Genome assembly contig set</option> | |
| 134 <option value="study">Studies</option> | |
| 135 <option value="taxon">Taxonomic classification</option> | |
| 136 <option value="coding_release">Protein-coding sequences (Release)</option> | |
| 137 <option value="sample">Samples</option> | |
| 138 <option value="environmental">Environmental samples</option> | |
| 139 <option value="read_run">Raw reads</option> | |
| 140 <option value="read_study">Raw reads (grouped by study)</option> | |
| 141 <option value="read_experiment">Raw reads (grouped by experiment)</option> | |
| 142 <option value="analysis">Nucleotide sequence analyses from reads</option> | |
| 143 <option value="sequence_update">Nucleotide sequences (Update)</option> | |
| 144 <option value="coding_update">Protein-coding sequences (Update)</option> | |
| 145 <option value="tsa_set">Transcriptome assembly contig set</option> | |
| 146 <option value="analysis_study">Nucleotide sequence analyses from reads (grouped by study)</option> | |
| 147 <option value="noncoding_update">Non-coding sequences (Update)</option> | |
| 148 </param> | |
| 149 <when value="noncoding_release"> | |
| 150 <conditional name="display_opt"> | |
| 151 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 152 <expand macro="display_options"/> | |
| 153 </param> | |
| 154 <when value="xml"> | |
| 155 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 156 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 157 </when> | |
| 158 <when value="text"> | |
| 159 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 160 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 161 </when> | |
| 162 <when value="fastq"/> | |
| 163 <when value="html"> | |
| 164 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 165 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 166 </when> | |
| 167 <when value="report"> | |
| 168 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 169 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 170 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 171 <option value="accession">accession</option> | |
| 172 <option value="base_count">base_count</option> | |
| 173 <option value="collected_by">collected_by</option> | |
| 174 <option value="dataclass">dataclass</option> | |
| 175 <option value="first_public">first_public</option> | |
| 176 <option value="last_updated">last_updated</option> | |
| 177 <option value="location">location</option> | |
| 178 <option value="tax_division">tax_division</option> | |
| 179 <option value="tax_id">tax_id</option> | |
| 180 <option value="scientific_name">scientific_name</option> | |
| 181 <option value="rna_class">rna_class</option> | |
| 182 <option value="gene">gene</option> | |
| 183 <option value="gene_synonym">gene_synonym</option> | |
| 184 <option value="product">product</option> | |
| 185 <option value="anticodon">anticodon</option> | |
| 186 <option value="function">function</option> | |
| 187 <option value="locus_tag">locus_tag</option> | |
| 188 <option value="experiment">experiment</option> | |
| 189 <option value="inference">inference</option> | |
| 190 <option value="note">note</option> | |
| 191 <option value="bio_material">bio_material</option> | |
| 192 <option value="cell_line">cell_line</option> | |
| 193 <option value="cell_type">cell_type</option> | |
| 194 <option value="country">country</option> | |
| 195 <option value="cultivar">cultivar</option> | |
| 196 <option value="culture_collection">culture_collection</option> | |
| 197 <option value="description">description</option> | |
| 198 <option value="dev_stage">dev_stage</option> | |
| 199 <option value="ecotype">ecotype</option> | |
| 200 <option value="environmental_sample">environmental_sample</option> | |
| 201 <option value="germline">germline</option> | |
| 202 <option value="host">host</option> | |
| 203 <option value="identified_by">identified_by</option> | |
| 204 <option value="isolate">isolate</option> | |
| 205 <option value="isolation_source">isolation_source</option> | |
| 206 <option value="keywords">keywords</option> | |
| 207 <option value="lab_host">lab_host</option> | |
| 208 <option value="mating_type">mating_type</option> | |
| 209 <option value="mol_type">mol_type</option> | |
| 210 <option value="organelle">organelle</option> | |
| 211 <option value="serotype">serotype</option> | |
| 212 <option value="serovar">serovar</option> | |
| 213 <option value="sex">sex</option> | |
| 214 <option value="collection_date">collection_date</option> | |
| 215 <option value="submitted_sex">submitted_sex</option> | |
| 216 <option value="specimen_voucher">specimen_voucher</option> | |
| 217 <option value="strain">strain</option> | |
| 218 <option value="sub_species">sub_species</option> | |
| 219 <option value="sub_strain">sub_strain</option> | |
| 220 <option value="tissue_lib">tissue_lib</option> | |
| 221 <option value="tissue_type">tissue_type</option> | |
| 222 <option value="topology">topology</option> | |
| 223 <option value="variety">variety</option> | |
| 224 <option value="sequence_md5">sequence_md5</option> | |
| 225 <option value="study_accession">study_accession</option> | |
| 226 </param> | |
| 227 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 228 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 229 <option value="last_updated">date when last updated</option> | |
| 230 <option value="sequence_md5"></option> | |
| 231 <option value="collected_by">name of the person who collected the specimen</option> | |
| 232 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 233 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 234 <option value="keywords">keywords associated with sequence</option> | |
| 235 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 236 <option value="inference">a structured description of non-experimental evidence</option> | |
| 237 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 238 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 239 <option value="note">any comment or additional information</option> | |
| 240 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 241 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 242 <option value="tax_division">taxonomic division</option> | |
| 243 <option value="collection_date">date that the specimen was collected</option> | |
| 244 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 245 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 246 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 247 <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option> | |
| 248 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 249 <option value="location">geographic location of isolation of the sample</option> | |
| 250 <option value="study_accession">study accession number</option> | |
| 251 <option value="function">function attributed to a sequence</option> | |
| 252 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 253 <option value="product">name of the product associated with the feature</option> | |
| 254 <option value="description">brief sequence description</option> | |
| 255 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 256 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 257 <option value="accession">accession number</option> | |
| 258 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 259 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 260 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 261 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 262 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 263 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 264 <option value="base_count">number of base pairs</option> | |
| 265 <option value="topology">sequence topology: circular or linear</option> | |
| 266 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 267 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 268 <option value="first_public">date when made public</option> | |
| 269 <option value="strain">strain from which sample was obtained</option> | |
| 270 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 271 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 272 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 273 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 274 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 275 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 276 <option value="rna_class">classification of RNA</option> | |
| 277 <option value="dataclass">sequence data class</option> | |
| 278 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 279 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 280 </param> | |
| 281 </when> | |
| 282 <when value="fasta"/> | |
| 283 </conditional> | |
| 284 </when> | |
| 285 <when value="assembly"> | |
| 286 <conditional name="display_opt"> | |
| 287 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 288 <expand macro="display_options"/> | |
| 289 </param> | |
| 290 <when value="xml"> | |
| 291 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 292 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 293 </when> | |
| 294 <when value="text"> | |
| 295 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 296 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 297 </when> | |
| 298 <when value="fastq"/> | |
| 299 <when value="html"> | |
| 300 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 301 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 302 </when> | |
| 303 <when value="report"> | |
| 304 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 305 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 306 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 307 <option value="accession">accession</option> | |
| 308 <option value="study_accession">study_accession</option> | |
| 309 <option value="sample_accession">sample_accession</option> | |
| 310 <option value="assembly_name">assembly_name</option> | |
| 311 <option value="assembly_title">assembly_title</option> | |
| 312 <option value="study_name">study_name</option> | |
| 313 <option value="study_title">study_title</option> | |
| 314 <option value="study_description">study_description</option> | |
| 315 <option value="tax_id">tax_id</option> | |
| 316 <option value="scientific_name">scientific_name</option> | |
| 317 <option value="strain">strain</option> | |
| 318 <option value="base_count">base_count</option> | |
| 319 <option value="assembly_level">assembly_level</option> | |
| 320 <option value="genome_representation">genome_representation</option> | |
| 321 </param> | |
| 322 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 323 <option value="assembly_name">genome assembly name for all live versions</option> | |
| 324 <option value="base_count">number of base pairs</option> | |
| 325 <option value="strain">strain from which sample was obtained</option> | |
| 326 <option value="study_description">detailed sequencing study description</option> | |
| 327 <option value="accession">accession number</option> | |
| 328 <option value="assembly_level">assembly level</option> | |
| 329 <option value="sample_accession">sample accession number</option> | |
| 330 <option value="assembly_title">brief genome assembly description</option> | |
| 331 <option value="study_title">brief sequencing study description</option> | |
| 332 <option value="genome_representation">whether this is a full or partial genome</option> | |
| 333 <option value="study_name">sequencing study name</option> | |
| 334 <option value="study_accession">study accession number</option> | |
| 335 </param> | |
| 336 </when> | |
| 337 <when value="fasta"/> | |
| 338 </conditional> | |
| 339 </when> | |
| 340 <when value="sequence_release"> | |
| 341 <conditional name="display_opt"> | |
| 342 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 343 <expand macro="display_options"/> | |
| 344 </param> | |
| 345 <when value="xml"> | |
| 346 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 347 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 348 </when> | |
| 349 <when value="text"> | |
| 350 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 351 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 352 </when> | |
| 353 <when value="fastq"/> | |
| 354 <when value="html"> | |
| 355 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 356 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 357 </when> | |
| 358 <when value="report"> | |
| 359 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 360 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 361 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 362 <option value="accession">accession</option> | |
| 363 <option value="base_count">base_count</option> | |
| 364 <option value="bio_material">bio_material</option> | |
| 365 <option value="cell_line">cell_line</option> | |
| 366 <option value="cell_type">cell_type</option> | |
| 367 <option value="collected_by">collected_by</option> | |
| 368 <option value="collection_date">collection_date</option> | |
| 369 <option value="country">country</option> | |
| 370 <option value="cultivar">cultivar</option> | |
| 371 <option value="culture_collection">culture_collection</option> | |
| 372 <option value="dataclass">dataclass</option> | |
| 373 <option value="description">description</option> | |
| 374 <option value="dev_stage">dev_stage</option> | |
| 375 <option value="ecotype">ecotype</option> | |
| 376 <option value="environmental_sample">environmental_sample</option> | |
| 377 <option value="first_public">first_public</option> | |
| 378 <option value="germline">germline</option> | |
| 379 <option value="host">host</option> | |
| 380 <option value="identified_by">identified_by</option> | |
| 381 <option value="isolate">isolate</option> | |
| 382 <option value="isolation_source">isolation_source</option> | |
| 383 <option value="keywords">keywords</option> | |
| 384 <option value="lab_host">lab_host</option> | |
| 385 <option value="last_updated">last_updated</option> | |
| 386 <option value="location">location</option> | |
| 387 <option value="mating_type">mating_type</option> | |
| 388 <option value="mol_type">mol_type</option> | |
| 389 <option value="organelle">organelle</option> | |
| 390 <option value="serotype">serotype</option> | |
| 391 <option value="serovar">serovar</option> | |
| 392 <option value="sex">sex</option> | |
| 393 <option value="submitted_sex">submitted_sex</option> | |
| 394 <option value="specimen_voucher">specimen_voucher</option> | |
| 395 <option value="strain">strain</option> | |
| 396 <option value="sub_species">sub_species</option> | |
| 397 <option value="sub_strain">sub_strain</option> | |
| 398 <option value="tax_division">tax_division</option> | |
| 399 <option value="tissue_lib">tissue_lib</option> | |
| 400 <option value="tissue_type">tissue_type</option> | |
| 401 <option value="topology">topology</option> | |
| 402 <option value="variety">variety</option> | |
| 403 <option value="tax_id">tax_id</option> | |
| 404 <option value="scientific_name">scientific_name</option> | |
| 405 <option value="altitude">altitude</option> | |
| 406 <option value="haplotype">haplotype</option> | |
| 407 <option value="plasmid">plasmid</option> | |
| 408 <option value="study_accession">study_accession</option> | |
| 409 <option value="sequence_md5">sequence_md5</option> | |
| 410 </param> | |
| 411 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 412 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 413 <option value="last_updated">date when last updated</option> | |
| 414 <option value="sequence_md5"></option> | |
| 415 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 416 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 417 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 418 <option value="keywords">keywords associated with sequence</option> | |
| 419 <option value="collected_by">name of the person who collected the specimen</option> | |
| 420 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 421 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 422 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 423 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 424 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 425 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 426 <option value="tax_division">taxonomic division</option> | |
| 427 <option value="collection_date">date that the specimen was collected</option> | |
| 428 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 429 <option value="altitude">Altitude (m)</option> | |
| 430 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 431 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 432 <option value="location">geographic location of isolation of the sample</option> | |
| 433 <option value="study_accession">study accession number</option> | |
| 434 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 435 <option value="description">brief sequence description</option> | |
| 436 <option value="accession">accession number</option> | |
| 437 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 438 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 439 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 440 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 441 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 442 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 443 <option value="base_count">number of base pairs</option> | |
| 444 <option value="topology">sequence topology: circular or linear</option> | |
| 445 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 446 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 447 <option value="first_public">date when made public</option> | |
| 448 <option value="strain">strain from which sample was obtained</option> | |
| 449 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 450 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 451 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 452 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 453 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 454 <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option> | |
| 455 <option value="dataclass">sequence data class</option> | |
| 456 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 457 </param> | |
| 458 </when> | |
| 459 <when value="fasta"/> | |
| 460 </conditional> | |
| 461 </when> | |
| 462 <when value="wgs_set"> | |
| 463 <conditional name="display_opt"> | |
| 464 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 465 <expand macro="display_options"/> | |
| 466 </param> | |
| 467 <when value="xml"> | |
| 468 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 469 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 470 </when> | |
| 471 <when value="text"> | |
| 472 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 473 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 474 </when> | |
| 475 <when value="fastq"/> | |
| 476 <when value="html"> | |
| 477 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 478 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 479 </when> | |
| 480 <when value="report"> | |
| 481 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 482 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 483 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 484 <option value="accession">accession</option> | |
| 485 <option value="bio_material">bio_material</option> | |
| 486 <option value="cell_line">cell_line</option> | |
| 487 <option value="cell_type">cell_type</option> | |
| 488 <option value="collected_by">collected_by</option> | |
| 489 <option value="collection_date">collection_date</option> | |
| 490 <option value="country">country</option> | |
| 491 <option value="cultivar">cultivar</option> | |
| 492 <option value="culture_collection">culture_collection</option> | |
| 493 <option value="description">description</option> | |
| 494 <option value="dev_stage">dev_stage</option> | |
| 495 <option value="ecotype">ecotype</option> | |
| 496 <option value="environmental_sample">environmental_sample</option> | |
| 497 <option value="first_public">first_public</option> | |
| 498 <option value="germline">germline</option> | |
| 499 <option value="host">host</option> | |
| 500 <option value="identified_by">identified_by</option> | |
| 501 <option value="isolate">isolate</option> | |
| 502 <option value="isolation_source">isolation_source</option> | |
| 503 <option value="keywords">keywords</option> | |
| 504 <option value="lab_host">lab_host</option> | |
| 505 <option value="last_updated">last_updated</option> | |
| 506 <option value="location">location</option> | |
| 507 <option value="mating_type">mating_type</option> | |
| 508 <option value="mol_type">mol_type</option> | |
| 509 <option value="serotype">serotype</option> | |
| 510 <option value="serovar">serovar</option> | |
| 511 <option value="sex">sex</option> | |
| 512 <option value="submitted_sex">submitted_sex</option> | |
| 513 <option value="specimen_voucher">specimen_voucher</option> | |
| 514 <option value="strain">strain</option> | |
| 515 <option value="sub_species">sub_species</option> | |
| 516 <option value="sub_strain">sub_strain</option> | |
| 517 <option value="tax_division">tax_division</option> | |
| 518 <option value="tissue_lib">tissue_lib</option> | |
| 519 <option value="tissue_type">tissue_type</option> | |
| 520 <option value="variety">variety</option> | |
| 521 <option value="tax_id">tax_id</option> | |
| 522 <option value="scientific_name">scientific_name</option> | |
| 523 <option value="altitude">altitude</option> | |
| 524 <option value="haplotype">haplotype</option> | |
| 525 <option value="study_accession">study_accession</option> | |
| 526 <option value="set_files">set_files</option> | |
| 527 </param> | |
| 528 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 529 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 530 <option value="last_updated">date when last updated</option> | |
| 531 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 532 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 533 <option value="accession">accession number</option> | |
| 534 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 535 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 536 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 537 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 538 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 539 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 540 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 541 <option value="tax_division">taxonomic division</option> | |
| 542 <option value="collection_date">date that the specimen was collected</option> | |
| 543 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 544 <option value="altitude">Altitude (m)</option> | |
| 545 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 546 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 547 <option value="location">geographic location of isolation of the sample</option> | |
| 548 <option value="study_accession">study accession number</option> | |
| 549 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 550 <option value="description">brief sequence description</option> | |
| 551 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 552 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 553 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 554 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 555 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 556 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 557 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 558 <option value="collected_by">name of the person who collected the specimen</option> | |
| 559 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 560 <option value="first_public">date when made public</option> | |
| 561 <option value="strain">strain from which sample was obtained</option> | |
| 562 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 563 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 564 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 565 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 566 <option value="keywords">keywords associated with sequence</option> | |
| 567 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 568 </param> | |
| 569 </when> | |
| 570 <when value="fasta"/> | |
| 571 </conditional> | |
| 572 </when> | |
| 573 <when value="study"> | |
| 574 <conditional name="display_opt"> | |
| 575 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 576 <expand macro="display_options"/> | |
| 577 </param> | |
| 578 <when value="xml"> | |
| 579 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 580 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 581 </when> | |
| 582 <when value="text"> | |
| 583 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 584 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 585 </when> | |
| 586 <when value="fastq"/> | |
| 587 <when value="html"> | |
| 588 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 589 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 590 </when> | |
| 591 <when value="report"> | |
| 592 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 593 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 594 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 595 <option value="study_accession">study_accession</option> | |
| 596 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 597 <option value="study_description">study_description</option> | |
| 598 <option value="study_name">study_name</option> | |
| 599 <option value="study_title">study_title</option> | |
| 600 <option value="tax_id">tax_id</option> | |
| 601 <option value="scientific_name">scientific_name</option> | |
| 602 <option value="strain">strain</option> | |
| 603 <option value="breed">breed</option> | |
| 604 <option value="cultivar">cultivar</option> | |
| 605 <option value="isolate">isolate</option> | |
| 606 <option value="center_name">center_name</option> | |
| 607 <option value="broker_name">broker_name</option> | |
| 608 <option value="keywords">keywords</option> | |
| 609 <option value="geo_accession">geo_accession</option> | |
| 610 <option value="last_updated">last_updated</option> | |
| 611 </param> | |
| 612 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 613 <option value="broker_name">broker name</option> | |
| 614 <option value="last_updated">date when last updated</option> | |
| 615 <option value="center_name">Submitting center</option> | |
| 616 <option value="study_description">detailed sequencing study description</option> | |
| 617 <option value="breed">breed</option> | |
| 618 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 619 <option value="study_name">sequencing study name</option> | |
| 620 <option value="geo_accession">GEO accession</option> | |
| 621 <option value="strain">strain from which sample was obtained</option> | |
| 622 <option value="secondary_study_accession">project accession number</option> | |
| 623 <option value="keywords">keywords associated with sequence</option> | |
| 624 <option value="study_title">brief sequencing study description</option> | |
| 625 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 626 <option value="study_accession">study accession number</option> | |
| 627 </param> | |
| 628 </when> | |
| 629 <when value="fasta"/> | |
| 630 </conditional> | |
| 631 </when> | |
| 632 <when value="taxon"> | |
| 633 <conditional name="display_opt"> | |
| 634 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 635 <expand macro="display_options"/> | |
| 636 </param> | |
| 637 <when value="xml"> | |
| 638 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 639 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 640 </when> | |
| 641 <when value="text"> | |
| 642 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 643 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 644 </when> | |
| 645 <when value="fastq"/> | |
| 646 <when value="html"> | |
| 647 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 648 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 649 </when> | |
| 650 <when value="report"> | |
| 651 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 652 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 653 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 654 <option value="tax_id">tax_id</option> | |
| 655 <option value="taxon_title">taxon_title</option> | |
| 656 <option value="scientific_name">scientific_name</option> | |
| 657 </param> | |
| 658 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 659 </param> | |
| 660 </when> | |
| 661 <when value="fasta"/> | |
| 662 </conditional> | |
| 663 </when> | |
| 664 <when value="coding_release"> | |
| 665 <conditional name="display_opt"> | |
| 666 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 667 <expand macro="display_options"/> | |
| 668 </param> | |
| 669 <when value="xml"> | |
| 670 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 671 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 672 </when> | |
| 673 <when value="text"> | |
| 674 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 675 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 676 </when> | |
| 677 <when value="fastq"/> | |
| 678 <when value="html"> | |
| 679 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 680 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 681 </when> | |
| 682 <when value="report"> | |
| 683 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 684 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 685 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 686 <option value="accession">accession</option> | |
| 687 <option value="base_count">base_count</option> | |
| 688 <option value="bio_material">bio_material</option> | |
| 689 <option value="cell_line">cell_line</option> | |
| 690 <option value="cell_type">cell_type</option> | |
| 691 <option value="collected_by">collected_by</option> | |
| 692 <option value="collection_date">collection_date</option> | |
| 693 <option value="country">country</option> | |
| 694 <option value="cultivar">cultivar</option> | |
| 695 <option value="culture_collection">culture_collection</option> | |
| 696 <option value="dataclass">dataclass</option> | |
| 697 <option value="description">description</option> | |
| 698 <option value="dev_stage">dev_stage</option> | |
| 699 <option value="ecotype">ecotype</option> | |
| 700 <option value="environmental_sample">environmental_sample</option> | |
| 701 <option value="first_public">first_public</option> | |
| 702 <option value="germline">germline</option> | |
| 703 <option value="host">host</option> | |
| 704 <option value="identified_by">identified_by</option> | |
| 705 <option value="isolate">isolate</option> | |
| 706 <option value="isolation_source">isolation_source</option> | |
| 707 <option value="keywords">keywords</option> | |
| 708 <option value="lab_host">lab_host</option> | |
| 709 <option value="last_updated">last_updated</option> | |
| 710 <option value="location">location</option> | |
| 711 <option value="mating_type">mating_type</option> | |
| 712 <option value="mol_type">mol_type</option> | |
| 713 <option value="organelle">organelle</option> | |
| 714 <option value="serotype">serotype</option> | |
| 715 <option value="serovar">serovar</option> | |
| 716 <option value="sex">sex</option> | |
| 717 <option value="submitted_sex">submitted_sex</option> | |
| 718 <option value="specimen_voucher">specimen_voucher</option> | |
| 719 <option value="strain">strain</option> | |
| 720 <option value="sub_species">sub_species</option> | |
| 721 <option value="sub_strain">sub_strain</option> | |
| 722 <option value="tax_division">tax_division</option> | |
| 723 <option value="tissue_lib">tissue_lib</option> | |
| 724 <option value="tissue_type">tissue_type</option> | |
| 725 <option value="variety">variety</option> | |
| 726 <option value="allele">allele</option> | |
| 727 <option value="artificial_location">artificial_location</option> | |
| 728 <option value="codon_start">codon_start</option> | |
| 729 <option value="ec_number">ec_number</option> | |
| 730 <option value="exception">exception</option> | |
| 731 <option value="experiment">experiment</option> | |
| 732 <option value="function">function</option> | |
| 733 <option value="topology">topology</option> | |
| 734 <option value="gene">gene</option> | |
| 735 <option value="gene_synonym">gene_synonym</option> | |
| 736 <option value="inference">inference</option> | |
| 737 <option value="locus_tag">locus_tag</option> | |
| 738 <option value="map">map</option> | |
| 739 <option value="note">note</option> | |
| 740 <option value="old_locus_tag">old_locus_tag</option> | |
| 741 <option value="operon">operon</option> | |
| 742 <option value="partial">partial</option> | |
| 743 <option value="product">product</option> | |
| 744 <option value="protein_id">protein_id</option> | |
| 745 <option value="pseudo">pseudo</option> | |
| 746 <option value="pseudo_gene">pseudo_gene</option> | |
| 747 <option value="ribosomal_slippage">ribosomal_slippage</option> | |
| 748 <option value="standard_name">standard_name</option> | |
| 749 <option value="trans_splicing">trans_splicing</option> | |
| 750 <option value="transl_except">transl_except</option> | |
| 751 <option value="transl_table">transl_table</option> | |
| 752 <option value="tax_id">tax_id</option> | |
| 753 <option value="scientific_name">scientific_name</option> | |
| 754 <option value="parent_accession">parent_accession</option> | |
| 755 <option value="altitude">altitude</option> | |
| 756 <option value="haplotype">haplotype</option> | |
| 757 <option value="sequence_md5">sequence_md5</option> | |
| 758 </param> | |
| 759 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 760 <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option> | |
| 761 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 762 <option value="last_updated">date when last updated</option> | |
| 763 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 764 <option value="transl_except">a single codon translation that does not conform to genetic code</option> | |
| 765 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 766 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 767 <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option> | |
| 768 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 769 <option value="pseudo_gene">indicates that this feature is a pseudogene</option> | |
| 770 <option value="standard_name">accepted standard name for a feature</option> | |
| 771 <option value="collected_by">name of the person who collected the specimen</option> | |
| 772 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 773 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 774 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 775 <option value="inference">a structured description of non-experimental evidence</option> | |
| 776 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 777 <option value="parent_accession">parent sequence accession number</option> | |
| 778 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 779 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 780 <option value="sequence_md5"></option> | |
| 781 <option value="tax_division">taxonomic division</option> | |
| 782 <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 783 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 784 <option value="altitude">Altitude (m)</option> | |
| 785 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 786 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 787 <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option> | |
| 788 <option value="note">any comment or additional information</option> | |
| 789 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 790 <option value="location">geographic location of isolation of the sample</option> | |
| 791 <option value="collection_date">date that the specimen was collected</option> | |
| 792 <option value="allele">name of the allele for the given gene</option> | |
| 793 <option value="protein_id">a stable protein identifier issued by INSDC</option> | |
| 794 <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option> | |
| 795 <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option> | |
| 796 <option value="function">function attributed to a sequence</option> | |
| 797 <option value="map">genomic map position of feature</option> | |
| 798 <option value="product">name of the product associated with the feature</option> | |
| 799 <option value="description">brief sequence description</option> | |
| 800 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 801 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 802 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 803 <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option> | |
| 804 <option value="accession">accession number</option> | |
| 805 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 806 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 807 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 808 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 809 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 810 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 811 <option value="base_count">number of base pairs</option> | |
| 812 <option value="topology">sequence topology: circular or linear</option> | |
| 813 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 814 <option value="first_public">date when made public</option> | |
| 815 <option value="strain">strain from which sample was obtained</option> | |
| 816 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 817 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 818 <option value="pseudo">the feature is non-functional</option> | |
| 819 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 820 <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option> | |
| 821 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 822 <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option> | |
| 823 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 824 <option value="keywords">keywords associated with sequence</option> | |
| 825 <option value="dataclass">sequence data class</option> | |
| 826 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 827 <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option> | |
| 828 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 829 </param> | |
| 830 </when> | |
| 831 <when value="fasta"/> | |
| 832 </conditional> | |
| 833 </when> | |
| 834 <when value="sample"> | |
| 835 <conditional name="display_opt"> | |
| 836 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 837 <expand macro="display_options"/> | |
| 838 </param> | |
| 839 <when value="xml"> | |
| 840 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 841 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 842 </when> | |
| 843 <when value="text"> | |
| 844 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 845 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 846 </when> | |
| 847 <when value="fastq"/> | |
| 848 <when value="html"> | |
| 849 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 850 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 851 </when> | |
| 852 <when value="report"> | |
| 853 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 854 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 855 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 856 <option value="accession">accession</option> | |
| 857 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 858 <option value="bio_material">bio_material</option> | |
| 859 <option value="cell_line">cell_line</option> | |
| 860 <option value="cell_type">cell_type</option> | |
| 861 <option value="collected_by">collected_by</option> | |
| 862 <option value="collection_date">collection_date</option> | |
| 863 <option value="country">country</option> | |
| 864 <option value="cultivar">cultivar</option> | |
| 865 <option value="culture_collection">culture_collection</option> | |
| 866 <option value="description">description</option> | |
| 867 <option value="dev_stage">dev_stage</option> | |
| 868 <option value="ecotype">ecotype</option> | |
| 869 <option value="environmental_sample">environmental_sample</option> | |
| 870 <option value="first_public">first_public</option> | |
| 871 <option value="germline">germline</option> | |
| 872 <option value="identified_by">identified_by</option> | |
| 873 <option value="isolate">isolate</option> | |
| 874 <option value="isolation_source">isolation_source</option> | |
| 875 <option value="location">location</option> | |
| 876 <option value="mating_type">mating_type</option> | |
| 877 <option value="serotype">serotype</option> | |
| 878 <option value="serovar">serovar</option> | |
| 879 <option value="sex">sex</option> | |
| 880 <option value="submitted_sex">submitted_sex</option> | |
| 881 <option value="specimen_voucher">specimen_voucher</option> | |
| 882 <option value="strain">strain</option> | |
| 883 <option value="sub_species">sub_species</option> | |
| 884 <option value="sub_strain">sub_strain</option> | |
| 885 <option value="tissue_lib">tissue_lib</option> | |
| 886 <option value="tissue_type">tissue_type</option> | |
| 887 <option value="variety">variety</option> | |
| 888 <option value="tax_id">tax_id</option> | |
| 889 <option value="scientific_name">scientific_name</option> | |
| 890 <option value="sample_alias">sample_alias</option> | |
| 891 <option value="checklist">checklist</option> | |
| 892 <option value="center_name">center_name</option> | |
| 893 <option value="depth">depth</option> | |
| 894 <option value="elevation">elevation</option> | |
| 895 <option value="altitude">altitude</option> | |
| 896 <option value="environment_biome">environment_biome</option> | |
| 897 <option value="environment_feature">environment_feature</option> | |
| 898 <option value="environment_material">environment_material</option> | |
| 899 <option value="temperature">temperature</option> | |
| 900 <option value="salinity">salinity</option> | |
| 901 <option value="sampling_campaign">sampling_campaign</option> | |
| 902 <option value="sampling_site">sampling_site</option> | |
| 903 <option value="sampling_platform">sampling_platform</option> | |
| 904 <option value="protocol_label">protocol_label</option> | |
| 905 <option value="project_name">project_name</option> | |
| 906 <option value="host">host</option> | |
| 907 <option value="host_tax_id">host_tax_id</option> | |
| 908 <option value="host_status">host_status</option> | |
| 909 <option value="host_sex">host_sex</option> | |
| 910 <option value="submitted_host_sex">submitted_host_sex</option> | |
| 911 <option value="host_body_site">host_body_site</option> | |
| 912 <option value="host_gravidity">host_gravidity</option> | |
| 913 <option value="host_phenotype">host_phenotype</option> | |
| 914 <option value="host_genotype">host_genotype</option> | |
| 915 <option value="host_growth_conditions">host_growth_conditions</option> | |
| 916 <option value="environmental_package">environmental_package</option> | |
| 917 <option value="investigation_type">investigation_type</option> | |
| 918 <option value="experimental_factor">experimental_factor</option> | |
| 919 <option value="sample_collection">sample_collection</option> | |
| 920 <option value="sequencing_method">sequencing_method</option> | |
| 921 <option value="target_gene">target_gene</option> | |
| 922 <option value="ph">ph</option> | |
| 923 <option value="broker_name">broker_name</option> | |
| 924 </param> | |
| 925 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 926 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 927 <option value="environment_material">Environment (Material)</option> | |
| 928 <option value="host_sex">physical sex of the host</option> | |
| 929 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 930 <option value="center_name">Submitting center</option> | |
| 931 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 932 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 933 <option value="host_phenotype">phenotype of host</option> | |
| 934 <option value="sampling_site">the site/station where this sample was collection</option> | |
| 935 <option value="sequencing_method">sequencing method used</option> | |
| 936 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 937 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 938 <option value="target_gene">targeted gene or locus name for marker gene studies</option> | |
| 939 <option value="experimental_factor">variable aspects of the experimental design</option> | |
| 940 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 941 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 942 <option value="temperature">Temperature (C)</option> | |
| 943 <option value="sampling_platform">the large infrastructure from which this sample was collected</option> | |
| 944 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 945 <option value="collection_date">date that the specimen was collected</option> | |
| 946 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 947 <option value="altitude">Altitude (m)</option> | |
| 948 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 949 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 950 <option value="investigation_type">the study type targeted by the sequencing</option> | |
| 951 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 952 <option value="protocol_label">the protocol used to produce the sample</option> | |
| 953 <option value="location">geographic location of isolation of the sample</option> | |
| 954 <option value="host_genotype">genotype of host</option> | |
| 955 <option value="ph">pH</option> | |
| 956 <option value="broker_name">broker name</option> | |
| 957 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 958 <option value="project_name">name of the project within which the sequencing was organized</option> | |
| 959 <option value="elevation">Elevation (m)</option> | |
| 960 <option value="description">brief sequence description</option> | |
| 961 <option value="sample_alias">submitter's name for the sample</option> | |
| 962 <option value="checklist">checklist name (or ID)</option> | |
| 963 <option value="sampling_campaign">the activity within which this sample was collected</option> | |
| 964 <option value="accession">accession number</option> | |
| 965 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 966 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 967 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 968 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 969 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 970 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 971 <option value="environment_biome">Environment (Biome)</option> | |
| 972 <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option> | |
| 973 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 974 <option value="first_public">date when made public</option> | |
| 975 <option value="environment_feature">Environment (Feature)</option> | |
| 976 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 977 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 978 <option value="collected_by">name of the person who collected the specimen</option> | |
| 979 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 980 <option value="salinity">Salinity (PSU)</option> | |
| 981 <option value="host_status">condition of host (eg. diseased or healthy)</option> | |
| 982 <option value="strain">strain from which sample was obtained</option> | |
| 983 <option value="depth">Depth (m)</option> | |
| 984 <option value="host_tax_id">NCBI taxon id of the host</option> | |
| 985 <option value="host_body_site">name of body site from where the sample was obtained</option> | |
| 986 <option value="host_growth_conditions">literature reference giving growth conditions of the host</option> | |
| 987 <option value="sample_collection">the method or deviced employed for collecting the sample</option> | |
| 988 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 989 </param> | |
| 990 </when> | |
| 991 <when value="fasta"/> | |
| 992 </conditional> | |
| 993 </when> | |
| 994 <when value="environmental"> | |
| 995 <conditional name="display_opt"> | |
| 996 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 997 <expand macro="display_options"/> | |
| 998 </param> | |
| 999 <when value="xml"> | |
| 1000 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1001 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1002 </when> | |
| 1003 <when value="text"> | |
| 1004 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1005 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1006 </when> | |
| 1007 <when value="fastq"/> | |
| 1008 <when value="html"> | |
| 1009 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1010 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1011 </when> | |
| 1012 <when value="report"> | |
| 1013 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1014 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1015 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1016 <option value="accession">accession</option> | |
| 1017 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 1018 <option value="bio_material">bio_material</option> | |
| 1019 <option value="cell_line">cell_line</option> | |
| 1020 <option value="collected_by">collected_by</option> | |
| 1021 <option value="collection_date">collection_date</option> | |
| 1022 <option value="country">country</option> | |
| 1023 <option value="marine_region">marine_region</option> | |
| 1024 <option value="cultivar">cultivar</option> | |
| 1025 <option value="description">description</option> | |
| 1026 <option value="dev_stage">dev_stage</option> | |
| 1027 <option value="first_public">first_public</option> | |
| 1028 <option value="identified_by">identified_by</option> | |
| 1029 <option value="isolation_source">isolation_source</option> | |
| 1030 <option value="location">location</option> | |
| 1031 <option value="strain">strain</option> | |
| 1032 <option value="tissue_type">tissue_type</option> | |
| 1033 <option value="tax_id">tax_id</option> | |
| 1034 <option value="scientific_name">scientific_name</option> | |
| 1035 <option value="sample_alias">sample_alias</option> | |
| 1036 <option value="checklist">checklist</option> | |
| 1037 <option value="center_name">center_name</option> | |
| 1038 <option value="depth">depth</option> | |
| 1039 <option value="elevation">elevation</option> | |
| 1040 <option value="altitude">altitude</option> | |
| 1041 <option value="environment_biome">environment_biome</option> | |
| 1042 <option value="environment_feature">environment_feature</option> | |
| 1043 <option value="environment_material">environment_material</option> | |
| 1044 <option value="temperature">temperature</option> | |
| 1045 <option value="salinity">salinity</option> | |
| 1046 <option value="sampling_campaign">sampling_campaign</option> | |
| 1047 <option value="sampling_site">sampling_site</option> | |
| 1048 <option value="sampling_platform">sampling_platform</option> | |
| 1049 <option value="protocol_label">protocol_label</option> | |
| 1050 <option value="project_name">project_name</option> | |
| 1051 <option value="host">host</option> | |
| 1052 <option value="host_tax_id">host_tax_id</option> | |
| 1053 <option value="host_status">host_status</option> | |
| 1054 <option value="host_sex">host_sex</option> | |
| 1055 <option value="submitted_host_sex">submitted_host_sex</option> | |
| 1056 <option value="host_body_site">host_body_site</option> | |
| 1057 <option value="host_gravidity">host_gravidity</option> | |
| 1058 <option value="host_phenotype">host_phenotype</option> | |
| 1059 <option value="host_genotype">host_genotype</option> | |
| 1060 <option value="host_growth_conditions">host_growth_conditions</option> | |
| 1061 <option value="environmental_package">environmental_package</option> | |
| 1062 <option value="investigation_type">investigation_type</option> | |
| 1063 <option value="experimental_factor">experimental_factor</option> | |
| 1064 <option value="sample_collection">sample_collection</option> | |
| 1065 <option value="sequencing_method">sequencing_method</option> | |
| 1066 <option value="target_gene">target_gene</option> | |
| 1067 <option value="ph">ph</option> | |
| 1068 <option value="broker_name">broker_name</option> | |
| 1069 <option value="event_label">event_label</option> | |
| 1070 </param> | |
| 1071 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1072 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 1073 <option value="environment_material">Environment (Material)</option> | |
| 1074 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 1075 <option value="event_label">label given to sampling event</option> | |
| 1076 <option value="center_name">Submitting center</option> | |
| 1077 <option value="accession">accession number</option> | |
| 1078 <option value="host_phenotype">phenotype of host</option> | |
| 1079 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 1080 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 1081 <option value="target_gene">targeted gene or locus name for marker gene studies</option> | |
| 1082 <option value="experimental_factor">variable aspects of the experimental design</option> | |
| 1083 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 1084 <option value="temperature">Temperature (C)</option> | |
| 1085 <option value="sampling_platform">the large infrastructure from which this sample was collected</option> | |
| 1086 <option value="collected_by">name of the person who collected the specimen</option> | |
| 1087 <option value="collection_date">date that the specimen was collected</option> | |
| 1088 <option value="altitude">Altitude (m)</option> | |
| 1089 <option value="host_sex">physical sex of the host</option> | |
| 1090 <option value="investigation_type">the study type targeted by the sequencing</option> | |
| 1091 <option value="location">geographic location of isolation of the sample</option> | |
| 1092 <option value="host_genotype">genotype of host</option> | |
| 1093 <option value="ph">pH</option> | |
| 1094 <option value="broker_name">broker name</option> | |
| 1095 <option value="project_name">name of the project within which the sequencing was organized</option> | |
| 1096 <option value="elevation">Elevation (m)</option> | |
| 1097 <option value="description">brief sequence description</option> | |
| 1098 <option value="sample_alias">submitter's name for the sample</option> | |
| 1099 <option value="checklist">checklist name (or ID)</option> | |
| 1100 <option value="sampling_campaign">the activity within which this sample was collected</option> | |
| 1101 <option value="protocol_label">the protocol used to produce the sample</option> | |
| 1102 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 1103 <option value="sampling_site">the site/station where this sample was collection</option> | |
| 1104 <option value="host_tax_id">NCBI taxon id of the host</option> | |
| 1105 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 1106 <option value="environment_biome">Environment (Biome)</option> | |
| 1107 <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option> | |
| 1108 <option value="marine_region">geographical origin of the sample as defined by the marine region</option> | |
| 1109 <option value="first_public">date when made public</option> | |
| 1110 <option value="environment_feature">Environment (Feature)</option> | |
| 1111 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 1112 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 1113 <option value="salinity">Salinity (PSU)</option> | |
| 1114 <option value="host_status">condition of host (eg. diseased or healthy)</option> | |
| 1115 <option value="strain">strain from which sample was obtained</option> | |
| 1116 <option value="depth">Depth (m)</option> | |
| 1117 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 1118 <option value="host_body_site">name of body site from where the sample was obtained</option> | |
| 1119 <option value="host_growth_conditions">literature reference giving growth conditions of the host</option> | |
| 1120 <option value="sample_collection">the method or deviced employed for collecting the sample</option> | |
| 1121 <option value="sequencing_method">sequencing method used</option> | |
| 1122 </param> | |
| 1123 </when> | |
| 1124 <when value="fasta"/> | |
| 1125 </conditional> | |
| 1126 </when> | |
| 1127 <when value="read_run"> | |
| 1128 <conditional name="display_opt"> | |
| 1129 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1130 <expand macro="display_options"/> | |
| 1131 </param> | |
| 1132 <when value="xml"> | |
| 1133 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1134 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1135 </when> | |
| 1136 <when value="text"> | |
| 1137 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1138 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1139 </when> | |
| 1140 <when value="fastq"/> | |
| 1141 <when value="html"> | |
| 1142 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1143 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1144 </when> | |
| 1145 <when value="report"> | |
| 1146 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1147 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1148 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1149 <option value="study_accession">study_accession</option> | |
| 1150 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 1151 <option value="sample_accession">sample_accession</option> | |
| 1152 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 1153 <option value="experiment_accession">experiment_accession</option> | |
| 1154 <option value="run_accession">run_accession</option> | |
| 1155 <option value="submission_accession">submission_accession</option> | |
| 1156 <option value="tax_id">tax_id</option> | |
| 1157 <option value="scientific_name">scientific_name</option> | |
| 1158 <option value="instrument_platform">instrument_platform</option> | |
| 1159 <option value="instrument_model">instrument_model</option> | |
| 1160 <option value="library_name">library_name</option> | |
| 1161 <option value="nominal_length">nominal_length</option> | |
| 1162 <option value="library_layout">library_layout</option> | |
| 1163 <option value="library_strategy">library_strategy</option> | |
| 1164 <option value="library_source">library_source</option> | |
| 1165 <option value="library_selection">library_selection</option> | |
| 1166 <option value="read_count">read_count</option> | |
| 1167 <option value="base_count">base_count</option> | |
| 1168 <option value="center_name">center_name</option> | |
| 1169 <option value="first_public">first_public</option> | |
| 1170 <option value="last_updated">last_updated</option> | |
| 1171 <option value="experiment_title">experiment_title</option> | |
| 1172 <option value="study_title">study_title</option> | |
| 1173 <option value="study_alias">study_alias</option> | |
| 1174 <option value="experiment_alias">experiment_alias</option> | |
| 1175 <option value="run_alias">run_alias</option> | |
| 1176 <option value="fastq_bytes">fastq_bytes</option> | |
| 1177 <option value="fastq_md5">fastq_md5</option> | |
| 1178 <option value="fastq_ftp">fastq_ftp</option> | |
| 1179 <option value="fastq_aspera">fastq_aspera</option> | |
| 1180 <option value="fastq_galaxy">fastq_galaxy</option> | |
| 1181 <option value="submitted_bytes">submitted_bytes</option> | |
| 1182 <option value="submitted_md5">submitted_md5</option> | |
| 1183 <option value="submitted_ftp">submitted_ftp</option> | |
| 1184 <option value="submitted_aspera">submitted_aspera</option> | |
| 1185 <option value="submitted_galaxy">submitted_galaxy</option> | |
| 1186 <option value="submitted_format">submitted_format</option> | |
| 1187 <option value="sra_bytes">sra_bytes</option> | |
| 1188 <option value="sra_md5">sra_md5</option> | |
| 1189 <option value="sra_ftp">sra_ftp</option> | |
| 1190 <option value="sra_aspera">sra_aspera</option> | |
| 1191 <option value="sra_galaxy">sra_galaxy</option> | |
| 1192 <option value="cram_index_ftp">cram_index_ftp</option> | |
| 1193 <option value="cram_index_aspera">cram_index_aspera</option> | |
| 1194 <option value="cram_index_galaxy">cram_index_galaxy</option> | |
| 1195 <option value="sample_alias">sample_alias</option> | |
| 1196 <option value="broker_name">broker_name</option> | |
| 1197 </param> | |
| 1198 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1199 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 1200 <option value="library_name">sequencing library name</option> | |
| 1201 <option value="read_count">number of reads</option> | |
| 1202 <option value="last_updated">date when last updated</option> | |
| 1203 <option value="center_name">Submitting center</option> | |
| 1204 <option value="submission_accession">submission accession number</option> | |
| 1205 <option value="nominal_length">average fragmentation size of paired reads</option> | |
| 1206 <option value="base_count">number of base pairs</option> | |
| 1207 <option value="run_accession">run accession number</option> | |
| 1208 <option value="library_selection">method used to select or enrich the material being sequenced</option> | |
| 1209 <option value="library_strategy">sequencing technique intended for the library</option> | |
| 1210 <option value="experiment_accession">experiment accession number</option> | |
| 1211 <option value="study_alias">submitter's name for the study</option> | |
| 1212 <option value="submitted_format"></option> | |
| 1213 <option value="broker_name">broker name</option> | |
| 1214 <option value="sample_alias">submitter's name for the sample</option> | |
| 1215 <option value="run_alias">submitter's name for the run</option> | |
| 1216 <option value="secondary_study_accession">project accession number</option> | |
| 1217 <option value="study_accession">study accession number</option> | |
| 1218 <option value="library_layout">sequencing library layout</option> | |
| 1219 <option value="library_source">source material being sequenced</option> | |
| 1220 <option value="experiment_title">brief experiment title</option> | |
| 1221 <option value="first_public">date when made public</option> | |
| 1222 <option value="instrument_platform">instrument platform used in sequencing experiment</option> | |
| 1223 <option value="instrument_model">instrument model used in sequencing experiment</option> | |
| 1224 <option value="sample_accession">sample accession number</option> | |
| 1225 <option value="experiment_alias">submitter's name for the experiment</option> | |
| 1226 <option value="study_title">brief sequencing study description</option> | |
| 1227 </param> | |
| 1228 </when> | |
| 1229 <when value="fasta"/> | |
| 1230 </conditional> | |
| 1231 </when> | |
| 1232 <when value="read_study"> | |
| 1233 <conditional name="display_opt"> | |
| 1234 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1235 <expand macro="display_options"/> | |
| 1236 </param> | |
| 1237 <when value="xml"> | |
| 1238 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1239 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1240 </when> | |
| 1241 <when value="text"> | |
| 1242 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1243 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1244 </when> | |
| 1245 <when value="fastq"/> | |
| 1246 <when value="html"> | |
| 1247 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1248 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1249 </when> | |
| 1250 <when value="report"> | |
| 1251 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1252 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1253 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1254 <option value="study_accession">study_accession</option> | |
| 1255 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 1256 <option value="study_title">study_title</option> | |
| 1257 <option value="study_alias">study_alias</option> | |
| 1258 </param> | |
| 1259 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1260 <option value="study_title">brief sequencing study description</option> | |
| 1261 <option value="secondary_study_accession">project accession number</option> | |
| 1262 <option value="study_alias">submitter's name for the study</option> | |
| 1263 <option value="study_accession">study accession number</option> | |
| 1264 </param> | |
| 1265 </when> | |
| 1266 <when value="fasta"/> | |
| 1267 </conditional> | |
| 1268 </when> | |
| 1269 <when value="read_experiment"> | |
| 1270 <conditional name="display_opt"> | |
| 1271 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1272 <expand macro="display_options"/> | |
| 1273 </param> | |
| 1274 <when value="xml"> | |
| 1275 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1276 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1277 </when> | |
| 1278 <when value="text"> | |
| 1279 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1280 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1281 </when> | |
| 1282 <when value="fastq"/> | |
| 1283 <when value="html"> | |
| 1284 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1285 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1286 </when> | |
| 1287 <when value="report"> | |
| 1288 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1289 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1290 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1291 <option value="study_accession">study_accession</option> | |
| 1292 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 1293 <option value="experiment_accession">experiment_accession</option> | |
| 1294 <option value="instrument_platform">instrument_platform</option> | |
| 1295 <option value="instrument_model">instrument_model</option> | |
| 1296 <option value="library_name">library_name</option> | |
| 1297 <option value="library_layout">library_layout</option> | |
| 1298 <option value="library_strategy">library_strategy</option> | |
| 1299 <option value="library_source">library_source</option> | |
| 1300 <option value="library_selection">library_selection</option> | |
| 1301 <option value="experiment_title">experiment_title</option> | |
| 1302 <option value="study_title">study_title</option> | |
| 1303 <option value="study_alias">study_alias</option> | |
| 1304 <option value="experiment_alias">experiment_alias</option> | |
| 1305 </param> | |
| 1306 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1307 <option value="library_name">sequencing library name</option> | |
| 1308 <option value="study_title">brief sequencing study description</option> | |
| 1309 <option value="instrument_platform">instrument platform used in sequencing experiment</option> | |
| 1310 <option value="instrument_model">instrument model used in sequencing experiment</option> | |
| 1311 <option value="study_alias">submitter's name for the study</option> | |
| 1312 <option value="experiment_alias">submitter's name for the experiment</option> | |
| 1313 <option value="secondary_study_accession">project accession number</option> | |
| 1314 <option value="study_accession">study accession number</option> | |
| 1315 <option value="library_selection">method used to select or enrich the material being sequenced</option> | |
| 1316 <option value="library_layout">sequencing library layout</option> | |
| 1317 <option value="library_strategy">sequencing technique intended for the library</option> | |
| 1318 <option value="experiment_accession">experiment accession number</option> | |
| 1319 <option value="library_source">source material being sequenced</option> | |
| 1320 <option value="experiment_title">brief experiment title</option> | |
| 1321 </param> | |
| 1322 </when> | |
| 1323 <when value="fasta"/> | |
| 1324 </conditional> | |
| 1325 </when> | |
| 1326 <when value="analysis"> | |
| 1327 <conditional name="display_opt"> | |
| 1328 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1329 <expand macro="display_options"/> | |
| 1330 </param> | |
| 1331 <when value="xml"> | |
| 1332 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1333 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1334 </when> | |
| 1335 <when value="text"> | |
| 1336 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1337 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1338 </when> | |
| 1339 <when value="fastq"/> | |
| 1340 <when value="html"> | |
| 1341 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1342 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1343 </when> | |
| 1344 <when value="report"> | |
| 1345 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1346 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1347 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1348 <option value="analysis_accession">analysis_accession</option> | |
| 1349 <option value="study_accession">study_accession</option> | |
| 1350 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 1351 <option value="sample_accession">sample_accession</option> | |
| 1352 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 1353 <option value="analysis_title">analysis_title</option> | |
| 1354 <option value="analysis_type">analysis_type</option> | |
| 1355 <option value="center_name">center_name</option> | |
| 1356 <option value="first_public">first_public</option> | |
| 1357 <option value="last_updated">last_updated</option> | |
| 1358 <option value="study_title">study_title</option> | |
| 1359 <option value="tax_id">tax_id</option> | |
| 1360 <option value="scientific_name">scientific_name</option> | |
| 1361 <option value="analysis_alias">analysis_alias</option> | |
| 1362 <option value="study_alias">study_alias</option> | |
| 1363 <option value="submitted_bytes">submitted_bytes</option> | |
| 1364 <option value="submitted_md5">submitted_md5</option> | |
| 1365 <option value="submitted_ftp">submitted_ftp</option> | |
| 1366 <option value="submitted_aspera">submitted_aspera</option> | |
| 1367 <option value="submitted_galaxy">submitted_galaxy</option> | |
| 1368 <option value="sample_alias">sample_alias</option> | |
| 1369 <option value="broker_name">broker_name</option> | |
| 1370 </param> | |
| 1371 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1372 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 1373 <option value="broker_name">broker name</option> | |
| 1374 <option value="study_accession">study accession number</option> | |
| 1375 <option value="last_updated">date when last updated</option> | |
| 1376 <option value="first_public">date when made public</option> | |
| 1377 <option value="sample_alias">submitter's name for the sample</option> | |
| 1378 <option value="center_name">Submitting center</option> | |
| 1379 <option value="analysis_title">brief sequence analysis description</option> | |
| 1380 <option value="sample_accession">sample accession number</option> | |
| 1381 <option value="analysis_accession">analysis accession number</option> | |
| 1382 <option value="secondary_study_accession">project accession number</option> | |
| 1383 <option value="analysis_alias">submitter's name for the analysis</option> | |
| 1384 <option value="analysis_type">type of sequence analysis</option> | |
| 1385 <option value="study_title">brief sequencing study description</option> | |
| 1386 <option value="study_alias">submitter's name for the study</option> | |
| 1387 </param> | |
| 1388 </when> | |
| 1389 <when value="fasta"/> | |
| 1390 </conditional> | |
| 1391 </when> | |
| 1392 <when value="sequence_update"> | |
| 1393 <conditional name="display_opt"> | |
| 1394 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1395 <expand macro="display_options"/> | |
| 1396 </param> | |
| 1397 <when value="xml"> | |
| 1398 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1399 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1400 </when> | |
| 1401 <when value="text"> | |
| 1402 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1403 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1404 </when> | |
| 1405 <when value="fastq"/> | |
| 1406 <when value="html"> | |
| 1407 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1408 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1409 </when> | |
| 1410 <when value="report"> | |
| 1411 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1412 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1413 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1414 <option value="accession">accession</option> | |
| 1415 <option value="base_count">base_count</option> | |
| 1416 <option value="bio_material">bio_material</option> | |
| 1417 <option value="cell_line">cell_line</option> | |
| 1418 <option value="cell_type">cell_type</option> | |
| 1419 <option value="collected_by">collected_by</option> | |
| 1420 <option value="collection_date">collection_date</option> | |
| 1421 <option value="country">country</option> | |
| 1422 <option value="cultivar">cultivar</option> | |
| 1423 <option value="culture_collection">culture_collection</option> | |
| 1424 <option value="dataclass">dataclass</option> | |
| 1425 <option value="description">description</option> | |
| 1426 <option value="dev_stage">dev_stage</option> | |
| 1427 <option value="ecotype">ecotype</option> | |
| 1428 <option value="environmental_sample">environmental_sample</option> | |
| 1429 <option value="first_public">first_public</option> | |
| 1430 <option value="germline">germline</option> | |
| 1431 <option value="host">host</option> | |
| 1432 <option value="identified_by">identified_by</option> | |
| 1433 <option value="isolate">isolate</option> | |
| 1434 <option value="isolation_source">isolation_source</option> | |
| 1435 <option value="keywords">keywords</option> | |
| 1436 <option value="lab_host">lab_host</option> | |
| 1437 <option value="last_updated">last_updated</option> | |
| 1438 <option value="location">location</option> | |
| 1439 <option value="mating_type">mating_type</option> | |
| 1440 <option value="mol_type">mol_type</option> | |
| 1441 <option value="organelle">organelle</option> | |
| 1442 <option value="serotype">serotype</option> | |
| 1443 <option value="serovar">serovar</option> | |
| 1444 <option value="sex">sex</option> | |
| 1445 <option value="submitted_sex">submitted_sex</option> | |
| 1446 <option value="specimen_voucher">specimen_voucher</option> | |
| 1447 <option value="strain">strain</option> | |
| 1448 <option value="sub_species">sub_species</option> | |
| 1449 <option value="sub_strain">sub_strain</option> | |
| 1450 <option value="tax_division">tax_division</option> | |
| 1451 <option value="tissue_lib">tissue_lib</option> | |
| 1452 <option value="tissue_type">tissue_type</option> | |
| 1453 <option value="topology">topology</option> | |
| 1454 <option value="variety">variety</option> | |
| 1455 <option value="tax_id">tax_id</option> | |
| 1456 <option value="scientific_name">scientific_name</option> | |
| 1457 <option value="altitude">altitude</option> | |
| 1458 <option value="haplotype">haplotype</option> | |
| 1459 <option value="plasmid">plasmid</option> | |
| 1460 <option value="study_accession">study_accession</option> | |
| 1461 <option value="sequence_md5">sequence_md5</option> | |
| 1462 </param> | |
| 1463 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1464 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 1465 <option value="last_updated">date when last updated</option> | |
| 1466 <option value="sequence_md5"></option> | |
| 1467 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 1468 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 1469 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 1470 <option value="keywords">keywords associated with sequence</option> | |
| 1471 <option value="collected_by">name of the person who collected the specimen</option> | |
| 1472 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 1473 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 1474 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 1475 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 1476 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 1477 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 1478 <option value="tax_division">taxonomic division</option> | |
| 1479 <option value="collection_date">date that the specimen was collected</option> | |
| 1480 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 1481 <option value="altitude">Altitude (m)</option> | |
| 1482 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 1483 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 1484 <option value="location">geographic location of isolation of the sample</option> | |
| 1485 <option value="study_accession">study accession number</option> | |
| 1486 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 1487 <option value="description">brief sequence description</option> | |
| 1488 <option value="accession">accession number</option> | |
| 1489 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 1490 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 1491 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 1492 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 1493 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 1494 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 1495 <option value="base_count">number of base pairs</option> | |
| 1496 <option value="topology">sequence topology: circular or linear</option> | |
| 1497 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 1498 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 1499 <option value="first_public">date when made public</option> | |
| 1500 <option value="strain">strain from which sample was obtained</option> | |
| 1501 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 1502 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 1503 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 1504 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 1505 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 1506 <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option> | |
| 1507 <option value="dataclass">sequence data class</option> | |
| 1508 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 1509 </param> | |
| 1510 </when> | |
| 1511 <when value="fasta"/> | |
| 1512 </conditional> | |
| 1513 </when> | |
| 1514 <when value="coding_update"> | |
| 1515 <conditional name="display_opt"> | |
| 1516 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1517 <expand macro="display_options"/> | |
| 1518 </param> | |
| 1519 <when value="xml"> | |
| 1520 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1521 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1522 </when> | |
| 1523 <when value="text"> | |
| 1524 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1525 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1526 </when> | |
| 1527 <when value="fastq"/> | |
| 1528 <when value="html"> | |
| 1529 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1530 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1531 </when> | |
| 1532 <when value="report"> | |
| 1533 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1534 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1535 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1536 <option value="accession">accession</option> | |
| 1537 <option value="base_count">base_count</option> | |
| 1538 <option value="bio_material">bio_material</option> | |
| 1539 <option value="cell_line">cell_line</option> | |
| 1540 <option value="cell_type">cell_type</option> | |
| 1541 <option value="collected_by">collected_by</option> | |
| 1542 <option value="collection_date">collection_date</option> | |
| 1543 <option value="country">country</option> | |
| 1544 <option value="cultivar">cultivar</option> | |
| 1545 <option value="culture_collection">culture_collection</option> | |
| 1546 <option value="dataclass">dataclass</option> | |
| 1547 <option value="description">description</option> | |
| 1548 <option value="dev_stage">dev_stage</option> | |
| 1549 <option value="ecotype">ecotype</option> | |
| 1550 <option value="environmental_sample">environmental_sample</option> | |
| 1551 <option value="first_public">first_public</option> | |
| 1552 <option value="germline">germline</option> | |
| 1553 <option value="host">host</option> | |
| 1554 <option value="identified_by">identified_by</option> | |
| 1555 <option value="isolate">isolate</option> | |
| 1556 <option value="isolation_source">isolation_source</option> | |
| 1557 <option value="keywords">keywords</option> | |
| 1558 <option value="lab_host">lab_host</option> | |
| 1559 <option value="last_updated">last_updated</option> | |
| 1560 <option value="location">location</option> | |
| 1561 <option value="mating_type">mating_type</option> | |
| 1562 <option value="mol_type">mol_type</option> | |
| 1563 <option value="organelle">organelle</option> | |
| 1564 <option value="serotype">serotype</option> | |
| 1565 <option value="serovar">serovar</option> | |
| 1566 <option value="sex">sex</option> | |
| 1567 <option value="submitted_sex">submitted_sex</option> | |
| 1568 <option value="specimen_voucher">specimen_voucher</option> | |
| 1569 <option value="strain">strain</option> | |
| 1570 <option value="sub_species">sub_species</option> | |
| 1571 <option value="sub_strain">sub_strain</option> | |
| 1572 <option value="tax_division">tax_division</option> | |
| 1573 <option value="tissue_lib">tissue_lib</option> | |
| 1574 <option value="tissue_type">tissue_type</option> | |
| 1575 <option value="variety">variety</option> | |
| 1576 <option value="allele">allele</option> | |
| 1577 <option value="artificial_location">artificial_location</option> | |
| 1578 <option value="codon_start">codon_start</option> | |
| 1579 <option value="ec_number">ec_number</option> | |
| 1580 <option value="exception">exception</option> | |
| 1581 <option value="experiment">experiment</option> | |
| 1582 <option value="function">function</option> | |
| 1583 <option value="topology">topology</option> | |
| 1584 <option value="gene">gene</option> | |
| 1585 <option value="gene_synonym">gene_synonym</option> | |
| 1586 <option value="inference">inference</option> | |
| 1587 <option value="locus_tag">locus_tag</option> | |
| 1588 <option value="map">map</option> | |
| 1589 <option value="note">note</option> | |
| 1590 <option value="old_locus_tag">old_locus_tag</option> | |
| 1591 <option value="operon">operon</option> | |
| 1592 <option value="partial">partial</option> | |
| 1593 <option value="product">product</option> | |
| 1594 <option value="protein_id">protein_id</option> | |
| 1595 <option value="pseudo">pseudo</option> | |
| 1596 <option value="pseudo_gene">pseudo_gene</option> | |
| 1597 <option value="ribosomal_slippage">ribosomal_slippage</option> | |
| 1598 <option value="standard_name">standard_name</option> | |
| 1599 <option value="trans_splicing">trans_splicing</option> | |
| 1600 <option value="transl_except">transl_except</option> | |
| 1601 <option value="transl_table">transl_table</option> | |
| 1602 <option value="tax_id">tax_id</option> | |
| 1603 <option value="scientific_name">scientific_name</option> | |
| 1604 <option value="parent_accession">parent_accession</option> | |
| 1605 <option value="altitude">altitude</option> | |
| 1606 <option value="haplotype">haplotype</option> | |
| 1607 <option value="sequence_md5">sequence_md5</option> | |
| 1608 </param> | |
| 1609 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1610 <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option> | |
| 1611 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 1612 <option value="last_updated">date when last updated</option> | |
| 1613 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 1614 <option value="transl_except">a single codon translation that does not conform to genetic code</option> | |
| 1615 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 1616 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 1617 <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option> | |
| 1618 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 1619 <option value="pseudo_gene">indicates that this feature is a pseudogene</option> | |
| 1620 <option value="standard_name">accepted standard name for a feature</option> | |
| 1621 <option value="collected_by">name of the person who collected the specimen</option> | |
| 1622 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 1623 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 1624 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 1625 <option value="inference">a structured description of non-experimental evidence</option> | |
| 1626 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 1627 <option value="parent_accession">parent sequence accession number</option> | |
| 1628 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 1629 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 1630 <option value="sequence_md5"></option> | |
| 1631 <option value="tax_division">taxonomic division</option> | |
| 1632 <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 1633 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 1634 <option value="altitude">Altitude (m)</option> | |
| 1635 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 1636 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 1637 <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option> | |
| 1638 <option value="note">any comment or additional information</option> | |
| 1639 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 1640 <option value="location">geographic location of isolation of the sample</option> | |
| 1641 <option value="collection_date">date that the specimen was collected</option> | |
| 1642 <option value="allele">name of the allele for the given gene</option> | |
| 1643 <option value="protein_id">a stable protein identifier issued by INSDC</option> | |
| 1644 <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option> | |
| 1645 <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option> | |
| 1646 <option value="function">function attributed to a sequence</option> | |
| 1647 <option value="map">genomic map position of feature</option> | |
| 1648 <option value="product">name of the product associated with the feature</option> | |
| 1649 <option value="description">brief sequence description</option> | |
| 1650 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 1651 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 1652 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 1653 <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option> | |
| 1654 <option value="accession">accession number</option> | |
| 1655 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 1656 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 1657 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 1658 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 1659 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 1660 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 1661 <option value="base_count">number of base pairs</option> | |
| 1662 <option value="topology">sequence topology: circular or linear</option> | |
| 1663 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 1664 <option value="first_public">date when made public</option> | |
| 1665 <option value="strain">strain from which sample was obtained</option> | |
| 1666 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 1667 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 1668 <option value="pseudo">the feature is non-functional</option> | |
| 1669 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 1670 <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option> | |
| 1671 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 1672 <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option> | |
| 1673 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 1674 <option value="keywords">keywords associated with sequence</option> | |
| 1675 <option value="dataclass">sequence data class</option> | |
| 1676 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 1677 <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option> | |
| 1678 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 1679 </param> | |
| 1680 </when> | |
| 1681 <when value="fasta"/> | |
| 1682 </conditional> | |
| 1683 </when> | |
| 1684 <when value="tsa_set"> | |
| 1685 <conditional name="display_opt"> | |
| 1686 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1687 <expand macro="display_options"/> | |
| 1688 </param> | |
| 1689 <when value="xml"> | |
| 1690 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1691 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1692 </when> | |
| 1693 <when value="text"> | |
| 1694 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1695 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1696 </when> | |
| 1697 <when value="fastq"/> | |
| 1698 <when value="html"> | |
| 1699 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1700 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1701 </when> | |
| 1702 <when value="report"> | |
| 1703 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1704 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1705 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1706 <option value="accession">accession</option> | |
| 1707 <option value="bio_material">bio_material</option> | |
| 1708 <option value="cell_line">cell_line</option> | |
| 1709 <option value="cell_type">cell_type</option> | |
| 1710 <option value="collected_by">collected_by</option> | |
| 1711 <option value="collection_date">collection_date</option> | |
| 1712 <option value="country">country</option> | |
| 1713 <option value="cultivar">cultivar</option> | |
| 1714 <option value="culture_collection">culture_collection</option> | |
| 1715 <option value="description">description</option> | |
| 1716 <option value="dev_stage">dev_stage</option> | |
| 1717 <option value="ecotype">ecotype</option> | |
| 1718 <option value="environmental_sample">environmental_sample</option> | |
| 1719 <option value="first_public">first_public</option> | |
| 1720 <option value="germline">germline</option> | |
| 1721 <option value="host">host</option> | |
| 1722 <option value="identified_by">identified_by</option> | |
| 1723 <option value="isolate">isolate</option> | |
| 1724 <option value="isolation_source">isolation_source</option> | |
| 1725 <option value="keywords">keywords</option> | |
| 1726 <option value="lab_host">lab_host</option> | |
| 1727 <option value="last_updated">last_updated</option> | |
| 1728 <option value="location">location</option> | |
| 1729 <option value="mating_type">mating_type</option> | |
| 1730 <option value="mol_type">mol_type</option> | |
| 1731 <option value="serotype">serotype</option> | |
| 1732 <option value="serovar">serovar</option> | |
| 1733 <option value="sex">sex</option> | |
| 1734 <option value="submitted_sex">submitted_sex</option> | |
| 1735 <option value="specimen_voucher">specimen_voucher</option> | |
| 1736 <option value="strain">strain</option> | |
| 1737 <option value="sub_species">sub_species</option> | |
| 1738 <option value="sub_strain">sub_strain</option> | |
| 1739 <option value="tax_division">tax_division</option> | |
| 1740 <option value="tissue_lib">tissue_lib</option> | |
| 1741 <option value="tissue_type">tissue_type</option> | |
| 1742 <option value="variety">variety</option> | |
| 1743 <option value="tax_id">tax_id</option> | |
| 1744 <option value="scientific_name">scientific_name</option> | |
| 1745 <option value="altitude">altitude</option> | |
| 1746 <option value="haplotype">haplotype</option> | |
| 1747 <option value="study_accession">study_accession</option> | |
| 1748 <option value="set_files">set_files</option> | |
| 1749 </param> | |
| 1750 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1751 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 1752 <option value="last_updated">date when last updated</option> | |
| 1753 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 1754 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 1755 <option value="accession">accession number</option> | |
| 1756 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 1757 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 1758 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 1759 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 1760 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 1761 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 1762 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 1763 <option value="tax_division">taxonomic division</option> | |
| 1764 <option value="collection_date">date that the specimen was collected</option> | |
| 1765 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 1766 <option value="altitude">Altitude (m)</option> | |
| 1767 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 1768 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 1769 <option value="location">geographic location of isolation of the sample</option> | |
| 1770 <option value="study_accession">study accession number</option> | |
| 1771 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 1772 <option value="description">brief sequence description</option> | |
| 1773 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 1774 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 1775 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 1776 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 1777 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 1778 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 1779 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 1780 <option value="collected_by">name of the person who collected the specimen</option> | |
| 1781 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 1782 <option value="first_public">date when made public</option> | |
| 1783 <option value="strain">strain from which sample was obtained</option> | |
| 1784 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 1785 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 1786 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 1787 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 1788 <option value="keywords">keywords associated with sequence</option> | |
| 1789 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 1790 </param> | |
| 1791 </when> | |
| 1792 <when value="fasta"/> | |
| 1793 </conditional> | |
| 1794 </when> | |
| 1795 <when value="analysis_study"> | |
| 1796 <conditional name="display_opt"> | |
| 1797 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1798 <expand macro="display_options"/> | |
| 1799 </param> | |
| 1800 <when value="xml"> | |
| 1801 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1802 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1803 </when> | |
| 1804 <when value="text"> | |
| 1805 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1806 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1807 </when> | |
| 1808 <when value="fastq"/> | |
| 1809 <when value="html"> | |
| 1810 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1811 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1812 </when> | |
| 1813 <when value="report"> | |
| 1814 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1815 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1816 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1817 <option value="study_accession">study_accession</option> | |
| 1818 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 1819 <option value="study_title">study_title</option> | |
| 1820 <option value="study_alias">study_alias</option> | |
| 1821 </param> | |
| 1822 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1823 <option value="study_title">brief sequencing study description</option> | |
| 1824 <option value="secondary_study_accession">project accession number</option> | |
| 1825 <option value="study_alias">submitter's name for the study</option> | |
| 1826 <option value="study_accession">study accession number</option> | |
| 1827 </param> | |
| 1828 </when> | |
| 1829 <when value="fasta"/> | |
| 1830 </conditional> | |
| 1831 </when> | |
| 1832 <when value="noncoding_update"> | |
| 1833 <conditional name="display_opt"> | |
| 1834 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 1835 <expand macro="display_options"/> | |
| 1836 </param> | |
| 1837 <when value="xml"> | |
| 1838 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1839 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1840 </when> | |
| 1841 <when value="text"> | |
| 1842 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1843 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1844 </when> | |
| 1845 <when value="fastq"/> | |
| 1846 <when value="html"> | |
| 1847 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1848 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1849 </when> | |
| 1850 <when value="report"> | |
| 1851 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 1852 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 1853 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 1854 <option value="accession">accession</option> | |
| 1855 <option value="base_count">base_count</option> | |
| 1856 <option value="collected_by">collected_by</option> | |
| 1857 <option value="dataclass">dataclass</option> | |
| 1858 <option value="first_public">first_public</option> | |
| 1859 <option value="last_updated">last_updated</option> | |
| 1860 <option value="location">location</option> | |
| 1861 <option value="tax_division">tax_division</option> | |
| 1862 <option value="tax_id">tax_id</option> | |
| 1863 <option value="scientific_name">scientific_name</option> | |
| 1864 <option value="rna_class">rna_class</option> | |
| 1865 <option value="gene">gene</option> | |
| 1866 <option value="gene_synonym">gene_synonym</option> | |
| 1867 <option value="product">product</option> | |
| 1868 <option value="anticodon">anticodon</option> | |
| 1869 <option value="function">function</option> | |
| 1870 <option value="locus_tag">locus_tag</option> | |
| 1871 <option value="experiment">experiment</option> | |
| 1872 <option value="inference">inference</option> | |
| 1873 <option value="note">note</option> | |
| 1874 <option value="bio_material">bio_material</option> | |
| 1875 <option value="cell_line">cell_line</option> | |
| 1876 <option value="cell_type">cell_type</option> | |
| 1877 <option value="country">country</option> | |
| 1878 <option value="cultivar">cultivar</option> | |
| 1879 <option value="culture_collection">culture_collection</option> | |
| 1880 <option value="description">description</option> | |
| 1881 <option value="dev_stage">dev_stage</option> | |
| 1882 <option value="ecotype">ecotype</option> | |
| 1883 <option value="environmental_sample">environmental_sample</option> | |
| 1884 <option value="germline">germline</option> | |
| 1885 <option value="host">host</option> | |
| 1886 <option value="identified_by">identified_by</option> | |
| 1887 <option value="isolate">isolate</option> | |
| 1888 <option value="isolation_source">isolation_source</option> | |
| 1889 <option value="keywords">keywords</option> | |
| 1890 <option value="lab_host">lab_host</option> | |
| 1891 <option value="mating_type">mating_type</option> | |
| 1892 <option value="mol_type">mol_type</option> | |
| 1893 <option value="organelle">organelle</option> | |
| 1894 <option value="serotype">serotype</option> | |
| 1895 <option value="serovar">serovar</option> | |
| 1896 <option value="sex">sex</option> | |
| 1897 <option value="collection_date">collection_date</option> | |
| 1898 <option value="submitted_sex">submitted_sex</option> | |
| 1899 <option value="specimen_voucher">specimen_voucher</option> | |
| 1900 <option value="strain">strain</option> | |
| 1901 <option value="sub_species">sub_species</option> | |
| 1902 <option value="sub_strain">sub_strain</option> | |
| 1903 <option value="tissue_lib">tissue_lib</option> | |
| 1904 <option value="tissue_type">tissue_type</option> | |
| 1905 <option value="topology">topology</option> | |
| 1906 <option value="variety">variety</option> | |
| 1907 <option value="sequence_md5">sequence_md5</option> | |
| 1908 <option value="study_accession">study_accession</option> | |
| 1909 </param> | |
| 1910 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 1911 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 1912 <option value="last_updated">date when last updated</option> | |
| 1913 <option value="sequence_md5"></option> | |
| 1914 <option value="collected_by">name of the person who collected the specimen</option> | |
| 1915 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 1916 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 1917 <option value="keywords">keywords associated with sequence</option> | |
| 1918 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 1919 <option value="inference">a structured description of non-experimental evidence</option> | |
| 1920 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 1921 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 1922 <option value="note">any comment or additional information</option> | |
| 1923 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 1924 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 1925 <option value="tax_division">taxonomic division</option> | |
| 1926 <option value="collection_date">date that the specimen was collected</option> | |
| 1927 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 1928 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 1929 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 1930 <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option> | |
| 1931 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 1932 <option value="location">geographic location of isolation of the sample</option> | |
| 1933 <option value="study_accession">study accession number</option> | |
| 1934 <option value="function">function attributed to a sequence</option> | |
| 1935 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 1936 <option value="product">name of the product associated with the feature</option> | |
| 1937 <option value="description">brief sequence description</option> | |
| 1938 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 1939 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 1940 <option value="accession">accession number</option> | |
| 1941 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 1942 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 1943 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 1944 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 1945 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 1946 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 1947 <option value="base_count">number of base pairs</option> | |
| 1948 <option value="topology">sequence topology: circular or linear</option> | |
| 1949 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 1950 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 1951 <option value="first_public">date when made public</option> | |
| 1952 <option value="strain">strain from which sample was obtained</option> | |
| 1953 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 1954 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 1955 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 1956 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 1957 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 1958 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 1959 <option value="rna_class">classification of RNA</option> | |
| 1960 <option value="dataclass">sequence data class</option> | |
| 1961 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 1962 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 1963 </param> | |
| 1964 </when> | |
| 1965 <when value="fasta"/> | |
| 1966 </conditional> | |
| 1967 </when> | |
| 1968 </conditional> | |
| 1969 </xml> | |
| 1970 <xml name="conditional_text_search"> | |
| 1971 <conditional name="res"> | |
| 1972 <param argument="--result" type="select" label="Result to return"> | |
| 1973 <option value="noncoding_release">Non-coding sequences (Release)</option> | |
| 1974 <option value="assembly">Genome assemblies</option> | |
| 1975 <option value="sequence_release">Nucleotide sequences (Release)</option> | |
| 1976 <option value="wgs_set">Genome assembly contig set</option> | |
| 1977 <option value="study">Studies</option> | |
| 1978 <option value="taxon">Taxonomic classification</option> | |
| 1979 <option value="coding_release">Protein-coding sequences (Release)</option> | |
| 1980 <option value="sample">Samples</option> | |
| 1981 <option value="environmental">Environmental samples</option> | |
| 1982 <option value="read_run">Raw reads</option> | |
| 1983 <option value="read_study">Raw reads (grouped by study)</option> | |
| 1984 <option value="read_experiment">Raw reads (grouped by experiment)</option> | |
| 1985 <option value="analysis">Nucleotide sequence analyses from reads</option> | |
| 1986 <option value="sequence_update">Nucleotide sequences (Update)</option> | |
| 1987 <option value="coding_update">Protein-coding sequences (Update)</option> | |
| 1988 <option value="tsa_set">Transcriptome assembly contig set</option> | |
| 1989 <option value="analysis_study">Nucleotide sequence analyses from reads (grouped by study)</option> | |
| 1990 <option value="noncoding_update">Non-coding sequences (Update)</option> | |
| 1991 </param> | |
| 1992 <when value="noncoding_release"> | |
| 1993 <repeat name="queries" title="Add a query"> | |
| 1994 <param name="combination_operation" type="select" label="Combination operation"> | |
| 1995 <option value="AND">AND</option> | |
| 1996 <option value="OR">OR</option> | |
| 1997 <option value="NOT">NOT</option> | |
| 1998 </param> | |
| 1999 <conditional name="filter_field"> | |
| 2000 <param name="field" type="select" label="Field to query"> | |
| 2001 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 2002 <option value="last_updated">date when last updated</option> | |
| 2003 <option value="sequence_md5"></option> | |
| 2004 <option value="collected_by">name of the person who collected the specimen</option> | |
| 2005 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 2006 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 2007 <option value="keywords">keywords associated with sequence</option> | |
| 2008 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 2009 <option value="inference">a structured description of non-experimental evidence</option> | |
| 2010 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 2011 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 2012 <option value="note">any comment or additional information</option> | |
| 2013 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 2014 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 2015 <option value="tax_division">taxonomic division</option> | |
| 2016 <option value="collection_date">date that the specimen was collected</option> | |
| 2017 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 2018 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 2019 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 2020 <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option> | |
| 2021 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 2022 <option value="location">geographic location of isolation of the sample</option> | |
| 2023 <option value="study_accession">study accession number</option> | |
| 2024 <option value="function">function attributed to a sequence</option> | |
| 2025 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 2026 <option value="product">name of the product associated with the feature</option> | |
| 2027 <option value="description">brief sequence description</option> | |
| 2028 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 2029 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 2030 <option value="accession">accession number</option> | |
| 2031 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 2032 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 2033 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 2034 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 2035 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 2036 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 2037 <option value="base_count">number of base pairs</option> | |
| 2038 <option value="topology">sequence topology: circular or linear</option> | |
| 2039 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 2040 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 2041 <option value="first_public">date when made public</option> | |
| 2042 <option value="strain">strain from which sample was obtained</option> | |
| 2043 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 2044 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 2045 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 2046 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 2047 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 2048 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 2049 <option value="rna_class">classification of RNA</option> | |
| 2050 <option value="dataclass">sequence data class</option> | |
| 2051 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 2052 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 2053 </param> | |
| 2054 <when value="mol_type"> | |
| 2055 <param name="operation" type="select" label="Operator"> | |
| 2056 <option value="equal">equal</option> | |
| 2057 <option value="different">different</option> | |
| 2058 </param> | |
| 2059 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2060 </when> | |
| 2061 <when value="last_updated"> | |
| 2062 <param name="operation" type="select" label="Operator"> | |
| 2063 <option value="equal">equal</option> | |
| 2064 <option value="different">different</option> | |
| 2065 <option value="lower">lower</option> | |
| 2066 <option value="equal or lower">equal or lower</option> | |
| 2067 <option value="higher">higher</option> | |
| 2068 <option value="equal or higher">equal or higher</option> | |
| 2069 </param> | |
| 2070 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 2071 </when> | |
| 2072 <when value="sequence_md5"> | |
| 2073 <param name="operation" type="select" label="Operator"> | |
| 2074 <option value="equal">equal</option> | |
| 2075 <option value="different">different</option> | |
| 2076 </param> | |
| 2077 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2078 </when> | |
| 2079 <when value="collected_by"> | |
| 2080 <param name="operation" type="select" label="Operator"> | |
| 2081 <option value="equal">equal</option> | |
| 2082 <option value="different">different</option> | |
| 2083 </param> | |
| 2084 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2085 </when> | |
| 2086 <when value="serotype"> | |
| 2087 <param name="operation" type="select" label="Operator"> | |
| 2088 <option value="equal">equal</option> | |
| 2089 <option value="different">different</option> | |
| 2090 </param> | |
| 2091 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2092 </when> | |
| 2093 <when value="sex"> | |
| 2094 <param name="operation" type="select" label="Operator"> | |
| 2095 <option value="equal">equal</option> | |
| 2096 <option value="different">different</option> | |
| 2097 </param> | |
| 2098 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2099 </when> | |
| 2100 <when value="keywords"> | |
| 2101 <param name="operation" type="select" label="Operator"> | |
| 2102 <option value="equal">equal</option> | |
| 2103 <option value="different">different</option> | |
| 2104 </param> | |
| 2105 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2106 </when> | |
| 2107 <when value="cell_line"> | |
| 2108 <param name="operation" type="select" label="Operator"> | |
| 2109 <option value="equal">equal</option> | |
| 2110 <option value="different">different</option> | |
| 2111 </param> | |
| 2112 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2113 </when> | |
| 2114 <when value="inference"> | |
| 2115 <param name="operation" type="select" label="Operator"> | |
| 2116 <option value="equal">equal</option> | |
| 2117 <option value="different">different</option> | |
| 2118 </param> | |
| 2119 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2120 </when> | |
| 2121 <when value="bio_material"> | |
| 2122 <param name="operation" type="select" label="Operator"> | |
| 2123 <option value="equal">equal</option> | |
| 2124 <option value="different">different</option> | |
| 2125 </param> | |
| 2126 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2127 </when> | |
| 2128 <when value="identified_by"> | |
| 2129 <param name="operation" type="select" label="Operator"> | |
| 2130 <option value="equal">equal</option> | |
| 2131 <option value="different">different</option> | |
| 2132 </param> | |
| 2133 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2134 </when> | |
| 2135 <when value="note"> | |
| 2136 <param name="operation" type="select" label="Operator"> | |
| 2137 <option value="equal">equal</option> | |
| 2138 <option value="different">different</option> | |
| 2139 </param> | |
| 2140 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2141 </when> | |
| 2142 <when value="locus_tag"> | |
| 2143 <param name="operation" type="select" label="Operator"> | |
| 2144 <option value="equal">equal</option> | |
| 2145 <option value="different">different</option> | |
| 2146 </param> | |
| 2147 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2148 </when> | |
| 2149 <when value="lab_host"> | |
| 2150 <param name="operation" type="select" label="Operator"> | |
| 2151 <option value="equal">equal</option> | |
| 2152 <option value="different">different</option> | |
| 2153 </param> | |
| 2154 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2155 </when> | |
| 2156 <when value="tax_division"> | |
| 2157 <param name="operation" type="select" label="Operator"> | |
| 2158 <option value="equal">equal</option> | |
| 2159 <option value="different">different</option> | |
| 2160 </param> | |
| 2161 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2162 </when> | |
| 2163 <when value="collection_date"> | |
| 2164 <param name="operation" type="select" label="Operator"> | |
| 2165 <option value="equal">equal</option> | |
| 2166 <option value="different">different</option> | |
| 2167 <option value="lower">lower</option> | |
| 2168 <option value="equal or lower">equal or lower</option> | |
| 2169 <option value="higher">higher</option> | |
| 2170 <option value="equal or higher">equal or higher</option> | |
| 2171 </param> | |
| 2172 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 2173 </when> | |
| 2174 <when value="specimen_voucher"> | |
| 2175 <param name="operation" type="select" label="Operator"> | |
| 2176 <option value="equal">equal</option> | |
| 2177 <option value="different">different</option> | |
| 2178 </param> | |
| 2179 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2180 </when> | |
| 2181 <when value="dev_stage"> | |
| 2182 <param name="operation" type="select" label="Operator"> | |
| 2183 <option value="equal">equal</option> | |
| 2184 <option value="different">different</option> | |
| 2185 </param> | |
| 2186 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2187 </when> | |
| 2188 <when value="isolate"> | |
| 2189 <param name="operation" type="select" label="Operator"> | |
| 2190 <option value="equal">equal</option> | |
| 2191 <option value="different">different</option> | |
| 2192 </param> | |
| 2193 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2194 </when> | |
| 2195 <when value="anticodon"> | |
| 2196 <param name="operation" type="select" label="Operator"> | |
| 2197 <option value="equal">equal</option> | |
| 2198 <option value="different">different</option> | |
| 2199 </param> | |
| 2200 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2201 </when> | |
| 2202 <when value="experiment"> | |
| 2203 <param name="operation" type="select" label="Operator"> | |
| 2204 <option value="equal">equal</option> | |
| 2205 <option value="different">different</option> | |
| 2206 </param> | |
| 2207 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2208 </when> | |
| 2209 <when value="location"> | |
| 2210 <conditional name="op"> | |
| 2211 <param name="operation" type="select" label="Operation"> | |
| 2212 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 2213 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 2214 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 2215 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 2216 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 2217 <option value="geo_point">An exact lat/lon position</option> | |
| 2218 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 2219 </param> | |
| 2220 <when value="geo_box2"> | |
| 2221 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 2222 </when> | |
| 2223 <when value="geo_box1"> | |
| 2224 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 2225 </when> | |
| 2226 <when value="geo_circ"> | |
| 2227 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 2228 </when> | |
| 2229 <when value="geo_lat"> | |
| 2230 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 2231 </when> | |
| 2232 <when value="geo_south"> | |
| 2233 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 2234 </when> | |
| 2235 <when value="geo_point"> | |
| 2236 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 2237 </when> | |
| 2238 <when value="geo_north"> | |
| 2239 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 2240 </when> | |
| 2241 </conditional> | |
| 2242 </when> | |
| 2243 <when value="study_accession"> | |
| 2244 <param name="operation" type="select" label="Operator"> | |
| 2245 <option value="equal">equal</option> | |
| 2246 <option value="different">different</option> | |
| 2247 </param> | |
| 2248 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2249 </when> | |
| 2250 <when value="function"> | |
| 2251 <param name="operation" type="select" label="Operator"> | |
| 2252 <option value="equal">equal</option> | |
| 2253 <option value="different">different</option> | |
| 2254 </param> | |
| 2255 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2256 </when> | |
| 2257 <when value="germline"> | |
| 2258 <param name="operation" type="select" label="Operator"> | |
| 2259 <option value="equal">equal</option> | |
| 2260 </param> | |
| 2261 <param name="value" type="select" label="Value"> | |
| 2262 <option value="yes">yes</option> | |
| 2263 <option value="true">true</option> | |
| 2264 <option value="no">no</option> | |
| 2265 <option value="false">false</option> | |
| 2266 </param> | |
| 2267 </when> | |
| 2268 <when value="product"> | |
| 2269 <param name="operation" type="select" label="Operator"> | |
| 2270 <option value="equal">equal</option> | |
| 2271 <option value="different">different</option> | |
| 2272 </param> | |
| 2273 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2274 </when> | |
| 2275 <when value="description"> | |
| 2276 <param name="operation" type="select" label="Operator"> | |
| 2277 <option value="equal">equal</option> | |
| 2278 <option value="different">different</option> | |
| 2279 </param> | |
| 2280 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2281 </when> | |
| 2282 <when value="ecotype"> | |
| 2283 <param name="operation" type="select" label="Operator"> | |
| 2284 <option value="equal">equal</option> | |
| 2285 <option value="different">different</option> | |
| 2286 </param> | |
| 2287 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2288 </when> | |
| 2289 <when value="cell_type"> | |
| 2290 <param name="operation" type="select" label="Operator"> | |
| 2291 <option value="equal">equal</option> | |
| 2292 <option value="different">different</option> | |
| 2293 </param> | |
| 2294 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2295 </when> | |
| 2296 <when value="accession"> | |
| 2297 <param name="operation" type="select" label="Operator"> | |
| 2298 <option value="equal">equal</option> | |
| 2299 <option value="different">different</option> | |
| 2300 </param> | |
| 2301 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2302 </when> | |
| 2303 <when value="isolation_source"> | |
| 2304 <param name="operation" type="select" label="Operator"> | |
| 2305 <option value="equal">equal</option> | |
| 2306 <option value="different">different</option> | |
| 2307 </param> | |
| 2308 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2309 </when> | |
| 2310 <when value="mating_type"> | |
| 2311 <param name="operation" type="select" label="Operator"> | |
| 2312 <option value="equal">equal</option> | |
| 2313 <option value="different">different</option> | |
| 2314 </param> | |
| 2315 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2316 </when> | |
| 2317 <when value="tissue_type"> | |
| 2318 <param name="operation" type="select" label="Operator"> | |
| 2319 <option value="equal">equal</option> | |
| 2320 <option value="different">different</option> | |
| 2321 </param> | |
| 2322 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2323 </when> | |
| 2324 <when value="sub_strain"> | |
| 2325 <param name="operation" type="select" label="Operator"> | |
| 2326 <option value="equal">equal</option> | |
| 2327 <option value="different">different</option> | |
| 2328 </param> | |
| 2329 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2330 </when> | |
| 2331 <when value="tissue_lib"> | |
| 2332 <param name="operation" type="select" label="Operator"> | |
| 2333 <option value="equal">equal</option> | |
| 2334 <option value="different">different</option> | |
| 2335 </param> | |
| 2336 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2337 </when> | |
| 2338 <when value="cultivar"> | |
| 2339 <param name="operation" type="select" label="Operator"> | |
| 2340 <option value="equal">equal</option> | |
| 2341 <option value="different">different</option> | |
| 2342 </param> | |
| 2343 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2344 </when> | |
| 2345 <when value="base_count"> | |
| 2346 <param name="operation" type="select" label="Operator"> | |
| 2347 <option value="equal">equal</option> | |
| 2348 <option value="different">different</option> | |
| 2349 <option value="lower">lower</option> | |
| 2350 <option value="equal or lower">equal or lower</option> | |
| 2351 <option value="higher">higher</option> | |
| 2352 <option value="equal or higher">equal or higher</option> | |
| 2353 </param> | |
| 2354 <param name="value" type="float" value="" label="Any integer"/> | |
| 2355 </when> | |
| 2356 <when value="topology"> | |
| 2357 <param name="operation" type="select" label="Operator"> | |
| 2358 <option value="equal">equal</option> | |
| 2359 <option value="different">different</option> | |
| 2360 </param> | |
| 2361 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2362 </when> | |
| 2363 <when value="sub_species"> | |
| 2364 <param name="operation" type="select" label="Operator"> | |
| 2365 <option value="equal">equal</option> | |
| 2366 <option value="different">different</option> | |
| 2367 </param> | |
| 2368 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2369 </when> | |
| 2370 <when value="environmental_sample"> | |
| 2371 <param name="operation" type="select" label="Operator"> | |
| 2372 <option value="equal">equal</option> | |
| 2373 </param> | |
| 2374 <param name="value" type="select" label="Value"> | |
| 2375 <option value="yes">yes</option> | |
| 2376 <option value="true">true</option> | |
| 2377 <option value="no">no</option> | |
| 2378 <option value="false">false</option> | |
| 2379 </param> | |
| 2380 </when> | |
| 2381 <when value="first_public"> | |
| 2382 <param name="operation" type="select" label="Operator"> | |
| 2383 <option value="equal">equal</option> | |
| 2384 <option value="different">different</option> | |
| 2385 <option value="lower">lower</option> | |
| 2386 <option value="equal or lower">equal or lower</option> | |
| 2387 <option value="higher">higher</option> | |
| 2388 <option value="equal or higher">equal or higher</option> | |
| 2389 </param> | |
| 2390 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 2391 </when> | |
| 2392 <when value="strain"> | |
| 2393 <param name="operation" type="select" label="Operator"> | |
| 2394 <option value="equal">equal</option> | |
| 2395 <option value="different">different</option> | |
| 2396 </param> | |
| 2397 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2398 </when> | |
| 2399 <when value="country"> | |
| 2400 <param name="operation" type="select" label="Operator"> | |
| 2401 <option value="equal">equal</option> | |
| 2402 <option value="different">different</option> | |
| 2403 </param> | |
| 2404 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2405 </when> | |
| 2406 <when value="variety"> | |
| 2407 <param name="operation" type="select" label="Operator"> | |
| 2408 <option value="equal">equal</option> | |
| 2409 <option value="different">different</option> | |
| 2410 </param> | |
| 2411 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2412 </when> | |
| 2413 <when value="host"> | |
| 2414 <param name="operation" type="select" label="Operator"> | |
| 2415 <option value="equal">equal</option> | |
| 2416 <option value="different">different</option> | |
| 2417 </param> | |
| 2418 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2419 </when> | |
| 2420 <when value="gene_synonym"> | |
| 2421 <param name="operation" type="select" label="Operator"> | |
| 2422 <option value="equal">equal</option> | |
| 2423 <option value="different">different</option> | |
| 2424 </param> | |
| 2425 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2426 </when> | |
| 2427 <when value="organelle"> | |
| 2428 <param name="operation" type="select" label="Operator"> | |
| 2429 <option value="equal">equal</option> | |
| 2430 <option value="different">different</option> | |
| 2431 </param> | |
| 2432 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2433 </when> | |
| 2434 <when value="serovar"> | |
| 2435 <param name="operation" type="select" label="Operator"> | |
| 2436 <option value="equal">equal</option> | |
| 2437 <option value="different">different</option> | |
| 2438 </param> | |
| 2439 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2440 </when> | |
| 2441 <when value="rna_class"> | |
| 2442 <param name="operation" type="select" label="Operator"> | |
| 2443 <option value="equal">equal</option> | |
| 2444 <option value="different">different</option> | |
| 2445 </param> | |
| 2446 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2447 </when> | |
| 2448 <when value="dataclass"> | |
| 2449 <param name="operation" type="select" label="Operator"> | |
| 2450 <option value="equal">equal</option> | |
| 2451 <option value="different">different</option> | |
| 2452 </param> | |
| 2453 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2454 </when> | |
| 2455 <when value="gene"> | |
| 2456 <param name="operation" type="select" label="Operator"> | |
| 2457 <option value="equal">equal</option> | |
| 2458 <option value="different">different</option> | |
| 2459 </param> | |
| 2460 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2461 </when> | |
| 2462 <when value="culture_collection"> | |
| 2463 <param name="operation" type="select" label="Operator"> | |
| 2464 <option value="equal">equal</option> | |
| 2465 <option value="different">different</option> | |
| 2466 </param> | |
| 2467 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2468 </when> | |
| 2469 </conditional> | |
| 2470 </repeat> | |
| 2471 <conditional name="display_opt"> | |
| 2472 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 2473 <expand macro="display_options"/> | |
| 2474 </param> | |
| 2475 <when value="xml"> | |
| 2476 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 2477 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 2478 </when> | |
| 2479 <when value="text"> | |
| 2480 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 2481 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 2482 </when> | |
| 2483 <when value="fastq"/> | |
| 2484 <when value="html"> | |
| 2485 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 2486 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 2487 </when> | |
| 2488 <when value="report"> | |
| 2489 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 2490 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 2491 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 2492 <option value="accession">accession</option> | |
| 2493 <option value="base_count">base_count</option> | |
| 2494 <option value="collected_by">collected_by</option> | |
| 2495 <option value="dataclass">dataclass</option> | |
| 2496 <option value="first_public">first_public</option> | |
| 2497 <option value="last_updated">last_updated</option> | |
| 2498 <option value="location">location</option> | |
| 2499 <option value="tax_division">tax_division</option> | |
| 2500 <option value="tax_id">tax_id</option> | |
| 2501 <option value="scientific_name">scientific_name</option> | |
| 2502 <option value="rna_class">rna_class</option> | |
| 2503 <option value="gene">gene</option> | |
| 2504 <option value="gene_synonym">gene_synonym</option> | |
| 2505 <option value="product">product</option> | |
| 2506 <option value="anticodon">anticodon</option> | |
| 2507 <option value="function">function</option> | |
| 2508 <option value="locus_tag">locus_tag</option> | |
| 2509 <option value="experiment">experiment</option> | |
| 2510 <option value="inference">inference</option> | |
| 2511 <option value="note">note</option> | |
| 2512 <option value="bio_material">bio_material</option> | |
| 2513 <option value="cell_line">cell_line</option> | |
| 2514 <option value="cell_type">cell_type</option> | |
| 2515 <option value="country">country</option> | |
| 2516 <option value="cultivar">cultivar</option> | |
| 2517 <option value="culture_collection">culture_collection</option> | |
| 2518 <option value="description">description</option> | |
| 2519 <option value="dev_stage">dev_stage</option> | |
| 2520 <option value="ecotype">ecotype</option> | |
| 2521 <option value="environmental_sample">environmental_sample</option> | |
| 2522 <option value="germline">germline</option> | |
| 2523 <option value="host">host</option> | |
| 2524 <option value="identified_by">identified_by</option> | |
| 2525 <option value="isolate">isolate</option> | |
| 2526 <option value="isolation_source">isolation_source</option> | |
| 2527 <option value="keywords">keywords</option> | |
| 2528 <option value="lab_host">lab_host</option> | |
| 2529 <option value="mating_type">mating_type</option> | |
| 2530 <option value="mol_type">mol_type</option> | |
| 2531 <option value="organelle">organelle</option> | |
| 2532 <option value="serotype">serotype</option> | |
| 2533 <option value="serovar">serovar</option> | |
| 2534 <option value="sex">sex</option> | |
| 2535 <option value="collection_date">collection_date</option> | |
| 2536 <option value="submitted_sex">submitted_sex</option> | |
| 2537 <option value="specimen_voucher">specimen_voucher</option> | |
| 2538 <option value="strain">strain</option> | |
| 2539 <option value="sub_species">sub_species</option> | |
| 2540 <option value="sub_strain">sub_strain</option> | |
| 2541 <option value="tissue_lib">tissue_lib</option> | |
| 2542 <option value="tissue_type">tissue_type</option> | |
| 2543 <option value="topology">topology</option> | |
| 2544 <option value="variety">variety</option> | |
| 2545 <option value="sequence_md5">sequence_md5</option> | |
| 2546 <option value="study_accession">study_accession</option> | |
| 2547 </param> | |
| 2548 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 2549 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 2550 <option value="last_updated">date when last updated</option> | |
| 2551 <option value="sequence_md5"></option> | |
| 2552 <option value="collected_by">name of the person who collected the specimen</option> | |
| 2553 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 2554 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 2555 <option value="keywords">keywords associated with sequence</option> | |
| 2556 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 2557 <option value="inference">a structured description of non-experimental evidence</option> | |
| 2558 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 2559 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 2560 <option value="note">any comment or additional information</option> | |
| 2561 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 2562 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 2563 <option value="tax_division">taxonomic division</option> | |
| 2564 <option value="collection_date">date that the specimen was collected</option> | |
| 2565 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 2566 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 2567 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 2568 <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option> | |
| 2569 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 2570 <option value="location">geographic location of isolation of the sample</option> | |
| 2571 <option value="study_accession">study accession number</option> | |
| 2572 <option value="function">function attributed to a sequence</option> | |
| 2573 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 2574 <option value="product">name of the product associated with the feature</option> | |
| 2575 <option value="description">brief sequence description</option> | |
| 2576 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 2577 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 2578 <option value="accession">accession number</option> | |
| 2579 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 2580 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 2581 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 2582 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 2583 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 2584 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 2585 <option value="base_count">number of base pairs</option> | |
| 2586 <option value="topology">sequence topology: circular or linear</option> | |
| 2587 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 2588 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 2589 <option value="first_public">date when made public</option> | |
| 2590 <option value="strain">strain from which sample was obtained</option> | |
| 2591 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 2592 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 2593 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 2594 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 2595 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 2596 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 2597 <option value="rna_class">classification of RNA</option> | |
| 2598 <option value="dataclass">sequence data class</option> | |
| 2599 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 2600 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 2601 </param> | |
| 2602 </when> | |
| 2603 <when value="fasta"/> | |
| 2604 </conditional> | |
| 2605 </when> | |
| 2606 <when value="assembly"> | |
| 2607 <repeat name="queries" title="Add a query"> | |
| 2608 <param name="combination_operation" type="select" label="Combination operation"> | |
| 2609 <option value="AND">AND</option> | |
| 2610 <option value="OR">OR</option> | |
| 2611 <option value="NOT">NOT</option> | |
| 2612 </param> | |
| 2613 <conditional name="filter_field"> | |
| 2614 <param name="field" type="select" label="Field to query"> | |
| 2615 <option value="assembly_name">genome assembly name for all live versions</option> | |
| 2616 <option value="base_count">number of base pairs</option> | |
| 2617 <option value="strain">strain from which sample was obtained</option> | |
| 2618 <option value="study_description">detailed sequencing study description</option> | |
| 2619 <option value="accession">accession number</option> | |
| 2620 <option value="assembly_level">assembly level</option> | |
| 2621 <option value="sample_accession">sample accession number</option> | |
| 2622 <option value="assembly_title">brief genome assembly description</option> | |
| 2623 <option value="study_title">brief sequencing study description</option> | |
| 2624 <option value="genome_representation">whether this is a full or partial genome</option> | |
| 2625 <option value="study_name">sequencing study name</option> | |
| 2626 <option value="study_accession">study accession number</option> | |
| 2627 </param> | |
| 2628 <when value="assembly_name"> | |
| 2629 <param name="operation" type="select" label="Operator"> | |
| 2630 <option value="equal">equal</option> | |
| 2631 <option value="different">different</option> | |
| 2632 </param> | |
| 2633 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2634 </when> | |
| 2635 <when value="base_count"> | |
| 2636 <param name="operation" type="select" label="Operator"> | |
| 2637 <option value="equal">equal</option> | |
| 2638 <option value="different">different</option> | |
| 2639 <option value="lower">lower</option> | |
| 2640 <option value="equal or lower">equal or lower</option> | |
| 2641 <option value="higher">higher</option> | |
| 2642 <option value="equal or higher">equal or higher</option> | |
| 2643 </param> | |
| 2644 <param name="value" type="float" value="" label="Any integer"/> | |
| 2645 </when> | |
| 2646 <when value="strain"> | |
| 2647 <param name="operation" type="select" label="Operator"> | |
| 2648 <option value="equal">equal</option> | |
| 2649 <option value="different">different</option> | |
| 2650 </param> | |
| 2651 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2652 </when> | |
| 2653 <when value="study_description"> | |
| 2654 <param name="operation" type="select" label="Operator"> | |
| 2655 <option value="equal">equal</option> | |
| 2656 <option value="different">different</option> | |
| 2657 </param> | |
| 2658 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2659 </when> | |
| 2660 <when value="accession"> | |
| 2661 <param name="operation" type="select" label="Operator"> | |
| 2662 <option value="equal">equal</option> | |
| 2663 <option value="different">different</option> | |
| 2664 </param> | |
| 2665 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2666 </when> | |
| 2667 <when value="assembly_level"> | |
| 2668 <param name="operation" type="select" label="Operator"> | |
| 2669 <option value="equal">equal</option> | |
| 2670 <option value="different">different</option> | |
| 2671 </param> | |
| 2672 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2673 </when> | |
| 2674 <when value="sample_accession"> | |
| 2675 <param name="operation" type="select" label="Operator"> | |
| 2676 <option value="equal">equal</option> | |
| 2677 <option value="different">different</option> | |
| 2678 </param> | |
| 2679 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2680 </when> | |
| 2681 <when value="assembly_title"> | |
| 2682 <param name="operation" type="select" label="Operator"> | |
| 2683 <option value="equal">equal</option> | |
| 2684 <option value="different">different</option> | |
| 2685 </param> | |
| 2686 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2687 </when> | |
| 2688 <when value="study_title"> | |
| 2689 <param name="operation" type="select" label="Operator"> | |
| 2690 <option value="equal">equal</option> | |
| 2691 <option value="different">different</option> | |
| 2692 </param> | |
| 2693 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2694 </when> | |
| 2695 <when value="genome_representation"> | |
| 2696 <param name="operation" type="select" label="Operator"> | |
| 2697 <option value="equal">equal</option> | |
| 2698 <option value="different">different</option> | |
| 2699 </param> | |
| 2700 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2701 </when> | |
| 2702 <when value="study_name"> | |
| 2703 <param name="operation" type="select" label="Operator"> | |
| 2704 <option value="equal">equal</option> | |
| 2705 <option value="different">different</option> | |
| 2706 </param> | |
| 2707 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2708 </when> | |
| 2709 <when value="study_accession"> | |
| 2710 <param name="operation" type="select" label="Operator"> | |
| 2711 <option value="equal">equal</option> | |
| 2712 <option value="different">different</option> | |
| 2713 </param> | |
| 2714 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2715 </when> | |
| 2716 </conditional> | |
| 2717 </repeat> | |
| 2718 <conditional name="display_opt"> | |
| 2719 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 2720 <expand macro="display_options"/> | |
| 2721 </param> | |
| 2722 <when value="xml"> | |
| 2723 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 2724 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 2725 </when> | |
| 2726 <when value="text"> | |
| 2727 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 2728 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 2729 </when> | |
| 2730 <when value="fastq"/> | |
| 2731 <when value="html"> | |
| 2732 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 2733 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 2734 </when> | |
| 2735 <when value="report"> | |
| 2736 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 2737 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 2738 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 2739 <option value="accession">accession</option> | |
| 2740 <option value="study_accession">study_accession</option> | |
| 2741 <option value="sample_accession">sample_accession</option> | |
| 2742 <option value="assembly_name">assembly_name</option> | |
| 2743 <option value="assembly_title">assembly_title</option> | |
| 2744 <option value="study_name">study_name</option> | |
| 2745 <option value="study_title">study_title</option> | |
| 2746 <option value="study_description">study_description</option> | |
| 2747 <option value="tax_id">tax_id</option> | |
| 2748 <option value="scientific_name">scientific_name</option> | |
| 2749 <option value="strain">strain</option> | |
| 2750 <option value="base_count">base_count</option> | |
| 2751 <option value="assembly_level">assembly_level</option> | |
| 2752 <option value="genome_representation">genome_representation</option> | |
| 2753 </param> | |
| 2754 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 2755 <option value="assembly_name">genome assembly name for all live versions</option> | |
| 2756 <option value="base_count">number of base pairs</option> | |
| 2757 <option value="strain">strain from which sample was obtained</option> | |
| 2758 <option value="study_description">detailed sequencing study description</option> | |
| 2759 <option value="accession">accession number</option> | |
| 2760 <option value="assembly_level">assembly level</option> | |
| 2761 <option value="sample_accession">sample accession number</option> | |
| 2762 <option value="assembly_title">brief genome assembly description</option> | |
| 2763 <option value="study_title">brief sequencing study description</option> | |
| 2764 <option value="genome_representation">whether this is a full or partial genome</option> | |
| 2765 <option value="study_name">sequencing study name</option> | |
| 2766 <option value="study_accession">study accession number</option> | |
| 2767 </param> | |
| 2768 </when> | |
| 2769 <when value="fasta"/> | |
| 2770 </conditional> | |
| 2771 </when> | |
| 2772 <when value="sequence_release"> | |
| 2773 <repeat name="queries" title="Add a query"> | |
| 2774 <param name="combination_operation" type="select" label="Combination operation"> | |
| 2775 <option value="AND">AND</option> | |
| 2776 <option value="OR">OR</option> | |
| 2777 <option value="NOT">NOT</option> | |
| 2778 </param> | |
| 2779 <conditional name="filter_field"> | |
| 2780 <param name="field" type="select" label="Field to query"> | |
| 2781 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 2782 <option value="last_updated">date when last updated</option> | |
| 2783 <option value="sequence_md5"></option> | |
| 2784 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 2785 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 2786 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 2787 <option value="keywords">keywords associated with sequence</option> | |
| 2788 <option value="collected_by">name of the person who collected the specimen</option> | |
| 2789 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 2790 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 2791 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 2792 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 2793 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 2794 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 2795 <option value="tax_division">taxonomic division</option> | |
| 2796 <option value="collection_date">date that the specimen was collected</option> | |
| 2797 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 2798 <option value="altitude">Altitude (m)</option> | |
| 2799 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 2800 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 2801 <option value="location">geographic location of isolation of the sample</option> | |
| 2802 <option value="study_accession">study accession number</option> | |
| 2803 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 2804 <option value="description">brief sequence description</option> | |
| 2805 <option value="accession">accession number</option> | |
| 2806 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 2807 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 2808 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 2809 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 2810 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 2811 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 2812 <option value="base_count">number of base pairs</option> | |
| 2813 <option value="topology">sequence topology: circular or linear</option> | |
| 2814 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 2815 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 2816 <option value="first_public">date when made public</option> | |
| 2817 <option value="strain">strain from which sample was obtained</option> | |
| 2818 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 2819 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 2820 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 2821 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 2822 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 2823 <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option> | |
| 2824 <option value="dataclass">sequence data class</option> | |
| 2825 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 2826 </param> | |
| 2827 <when value="mol_type"> | |
| 2828 <param name="operation" type="select" label="Operator"> | |
| 2829 <option value="equal">equal</option> | |
| 2830 <option value="different">different</option> | |
| 2831 </param> | |
| 2832 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2833 </when> | |
| 2834 <when value="last_updated"> | |
| 2835 <param name="operation" type="select" label="Operator"> | |
| 2836 <option value="equal">equal</option> | |
| 2837 <option value="different">different</option> | |
| 2838 <option value="lower">lower</option> | |
| 2839 <option value="equal or lower">equal or lower</option> | |
| 2840 <option value="higher">higher</option> | |
| 2841 <option value="equal or higher">equal or higher</option> | |
| 2842 </param> | |
| 2843 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 2844 </when> | |
| 2845 <when value="sequence_md5"> | |
| 2846 <param name="operation" type="select" label="Operator"> | |
| 2847 <option value="equal">equal</option> | |
| 2848 <option value="different">different</option> | |
| 2849 </param> | |
| 2850 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2851 </when> | |
| 2852 <when value="haplotype"> | |
| 2853 <param name="operation" type="select" label="Operator"> | |
| 2854 <option value="equal">equal</option> | |
| 2855 <option value="different">different</option> | |
| 2856 </param> | |
| 2857 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2858 </when> | |
| 2859 <when value="serotype"> | |
| 2860 <param name="operation" type="select" label="Operator"> | |
| 2861 <option value="equal">equal</option> | |
| 2862 <option value="different">different</option> | |
| 2863 </param> | |
| 2864 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2865 </when> | |
| 2866 <when value="sex"> | |
| 2867 <param name="operation" type="select" label="Operator"> | |
| 2868 <option value="equal">equal</option> | |
| 2869 <option value="different">different</option> | |
| 2870 </param> | |
| 2871 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2872 </when> | |
| 2873 <when value="keywords"> | |
| 2874 <param name="operation" type="select" label="Operator"> | |
| 2875 <option value="equal">equal</option> | |
| 2876 <option value="different">different</option> | |
| 2877 </param> | |
| 2878 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2879 </when> | |
| 2880 <when value="collected_by"> | |
| 2881 <param name="operation" type="select" label="Operator"> | |
| 2882 <option value="equal">equal</option> | |
| 2883 <option value="different">different</option> | |
| 2884 </param> | |
| 2885 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2886 </when> | |
| 2887 <when value="cell_line"> | |
| 2888 <param name="operation" type="select" label="Operator"> | |
| 2889 <option value="equal">equal</option> | |
| 2890 <option value="different">different</option> | |
| 2891 </param> | |
| 2892 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2893 </when> | |
| 2894 <when value="ecotype"> | |
| 2895 <param name="operation" type="select" label="Operator"> | |
| 2896 <option value="equal">equal</option> | |
| 2897 <option value="different">different</option> | |
| 2898 </param> | |
| 2899 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2900 </when> | |
| 2901 <when value="bio_material"> | |
| 2902 <param name="operation" type="select" label="Operator"> | |
| 2903 <option value="equal">equal</option> | |
| 2904 <option value="different">different</option> | |
| 2905 </param> | |
| 2906 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2907 </when> | |
| 2908 <when value="identified_by"> | |
| 2909 <param name="operation" type="select" label="Operator"> | |
| 2910 <option value="equal">equal</option> | |
| 2911 <option value="different">different</option> | |
| 2912 </param> | |
| 2913 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2914 </when> | |
| 2915 <when value="cell_type"> | |
| 2916 <param name="operation" type="select" label="Operator"> | |
| 2917 <option value="equal">equal</option> | |
| 2918 <option value="different">different</option> | |
| 2919 </param> | |
| 2920 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2921 </when> | |
| 2922 <when value="lab_host"> | |
| 2923 <param name="operation" type="select" label="Operator"> | |
| 2924 <option value="equal">equal</option> | |
| 2925 <option value="different">different</option> | |
| 2926 </param> | |
| 2927 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2928 </when> | |
| 2929 <when value="tax_division"> | |
| 2930 <param name="operation" type="select" label="Operator"> | |
| 2931 <option value="equal">equal</option> | |
| 2932 <option value="different">different</option> | |
| 2933 </param> | |
| 2934 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 2935 </when> | |
| 2936 <when value="collection_date"> | |
| 2937 <param name="operation" type="select" label="Operator"> | |
| 2938 <option value="equal">equal</option> | |
| 2939 <option value="different">different</option> | |
| 2940 <option value="lower">lower</option> | |
| 2941 <option value="equal or lower">equal or lower</option> | |
| 2942 <option value="higher">higher</option> | |
| 2943 <option value="equal or higher">equal or higher</option> | |
| 2944 </param> | |
| 2945 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 2946 </when> | |
| 2947 <when value="specimen_voucher"> | |
| 2948 <param name="operation" type="select" label="Operator"> | |
| 2949 <option value="equal">equal</option> | |
| 2950 <option value="different">different</option> | |
| 2951 </param> | |
| 2952 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2953 </when> | |
| 2954 <when value="altitude"> | |
| 2955 <param name="operation" type="select" label="Operator"> | |
| 2956 <option value="equal">equal</option> | |
| 2957 <option value="different">different</option> | |
| 2958 <option value="lower">lower</option> | |
| 2959 <option value="equal or lower">equal or lower</option> | |
| 2960 <option value="higher">higher</option> | |
| 2961 <option value="equal or higher">equal or higher</option> | |
| 2962 </param> | |
| 2963 <param name="value" type="float" value="" label="Any integer"/> | |
| 2964 </when> | |
| 2965 <when value="dev_stage"> | |
| 2966 <param name="operation" type="select" label="Operator"> | |
| 2967 <option value="equal">equal</option> | |
| 2968 <option value="different">different</option> | |
| 2969 </param> | |
| 2970 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2971 </when> | |
| 2972 <when value="isolate"> | |
| 2973 <param name="operation" type="select" label="Operator"> | |
| 2974 <option value="equal">equal</option> | |
| 2975 <option value="different">different</option> | |
| 2976 </param> | |
| 2977 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 2978 </when> | |
| 2979 <when value="location"> | |
| 2980 <conditional name="op"> | |
| 2981 <param name="operation" type="select" label="Operation"> | |
| 2982 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 2983 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 2984 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 2985 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 2986 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 2987 <option value="geo_point">An exact lat/lon position</option> | |
| 2988 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 2989 </param> | |
| 2990 <when value="geo_box2"> | |
| 2991 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 2992 </when> | |
| 2993 <when value="geo_box1"> | |
| 2994 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 2995 </when> | |
| 2996 <when value="geo_circ"> | |
| 2997 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 2998 </when> | |
| 2999 <when value="geo_lat"> | |
| 3000 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 3001 </when> | |
| 3002 <when value="geo_south"> | |
| 3003 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 3004 </when> | |
| 3005 <when value="geo_point"> | |
| 3006 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 3007 </when> | |
| 3008 <when value="geo_north"> | |
| 3009 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 3010 </when> | |
| 3011 </conditional> | |
| 3012 </when> | |
| 3013 <when value="study_accession"> | |
| 3014 <param name="operation" type="select" label="Operator"> | |
| 3015 <option value="equal">equal</option> | |
| 3016 <option value="different">different</option> | |
| 3017 </param> | |
| 3018 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3019 </when> | |
| 3020 <when value="germline"> | |
| 3021 <param name="operation" type="select" label="Operator"> | |
| 3022 <option value="equal">equal</option> | |
| 3023 </param> | |
| 3024 <param name="value" type="select" label="Value"> | |
| 3025 <option value="yes">yes</option> | |
| 3026 <option value="true">true</option> | |
| 3027 <option value="no">no</option> | |
| 3028 <option value="false">false</option> | |
| 3029 </param> | |
| 3030 </when> | |
| 3031 <when value="description"> | |
| 3032 <param name="operation" type="select" label="Operator"> | |
| 3033 <option value="equal">equal</option> | |
| 3034 <option value="different">different</option> | |
| 3035 </param> | |
| 3036 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3037 </when> | |
| 3038 <when value="accession"> | |
| 3039 <param name="operation" type="select" label="Operator"> | |
| 3040 <option value="equal">equal</option> | |
| 3041 <option value="different">different</option> | |
| 3042 </param> | |
| 3043 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3044 </when> | |
| 3045 <when value="isolation_source"> | |
| 3046 <param name="operation" type="select" label="Operator"> | |
| 3047 <option value="equal">equal</option> | |
| 3048 <option value="different">different</option> | |
| 3049 </param> | |
| 3050 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3051 </when> | |
| 3052 <when value="mating_type"> | |
| 3053 <param name="operation" type="select" label="Operator"> | |
| 3054 <option value="equal">equal</option> | |
| 3055 <option value="different">different</option> | |
| 3056 </param> | |
| 3057 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3058 </when> | |
| 3059 <when value="tissue_type"> | |
| 3060 <param name="operation" type="select" label="Operator"> | |
| 3061 <option value="equal">equal</option> | |
| 3062 <option value="different">different</option> | |
| 3063 </param> | |
| 3064 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3065 </when> | |
| 3066 <when value="sub_strain"> | |
| 3067 <param name="operation" type="select" label="Operator"> | |
| 3068 <option value="equal">equal</option> | |
| 3069 <option value="different">different</option> | |
| 3070 </param> | |
| 3071 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3072 </when> | |
| 3073 <when value="tissue_lib"> | |
| 3074 <param name="operation" type="select" label="Operator"> | |
| 3075 <option value="equal">equal</option> | |
| 3076 <option value="different">different</option> | |
| 3077 </param> | |
| 3078 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3079 </when> | |
| 3080 <when value="cultivar"> | |
| 3081 <param name="operation" type="select" label="Operator"> | |
| 3082 <option value="equal">equal</option> | |
| 3083 <option value="different">different</option> | |
| 3084 </param> | |
| 3085 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3086 </when> | |
| 3087 <when value="base_count"> | |
| 3088 <param name="operation" type="select" label="Operator"> | |
| 3089 <option value="equal">equal</option> | |
| 3090 <option value="different">different</option> | |
| 3091 <option value="lower">lower</option> | |
| 3092 <option value="equal or lower">equal or lower</option> | |
| 3093 <option value="higher">higher</option> | |
| 3094 <option value="equal or higher">equal or higher</option> | |
| 3095 </param> | |
| 3096 <param name="value" type="float" value="" label="Any integer"/> | |
| 3097 </when> | |
| 3098 <when value="topology"> | |
| 3099 <param name="operation" type="select" label="Operator"> | |
| 3100 <option value="equal">equal</option> | |
| 3101 <option value="different">different</option> | |
| 3102 </param> | |
| 3103 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 3104 </when> | |
| 3105 <when value="sub_species"> | |
| 3106 <param name="operation" type="select" label="Operator"> | |
| 3107 <option value="equal">equal</option> | |
| 3108 <option value="different">different</option> | |
| 3109 </param> | |
| 3110 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3111 </when> | |
| 3112 <when value="environmental_sample"> | |
| 3113 <param name="operation" type="select" label="Operator"> | |
| 3114 <option value="equal">equal</option> | |
| 3115 </param> | |
| 3116 <param name="value" type="select" label="Value"> | |
| 3117 <option value="yes">yes</option> | |
| 3118 <option value="true">true</option> | |
| 3119 <option value="no">no</option> | |
| 3120 <option value="false">false</option> | |
| 3121 </param> | |
| 3122 </when> | |
| 3123 <when value="first_public"> | |
| 3124 <param name="operation" type="select" label="Operator"> | |
| 3125 <option value="equal">equal</option> | |
| 3126 <option value="different">different</option> | |
| 3127 <option value="lower">lower</option> | |
| 3128 <option value="equal or lower">equal or lower</option> | |
| 3129 <option value="higher">higher</option> | |
| 3130 <option value="equal or higher">equal or higher</option> | |
| 3131 </param> | |
| 3132 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 3133 </when> | |
| 3134 <when value="strain"> | |
| 3135 <param name="operation" type="select" label="Operator"> | |
| 3136 <option value="equal">equal</option> | |
| 3137 <option value="different">different</option> | |
| 3138 </param> | |
| 3139 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3140 </when> | |
| 3141 <when value="country"> | |
| 3142 <param name="operation" type="select" label="Operator"> | |
| 3143 <option value="equal">equal</option> | |
| 3144 <option value="different">different</option> | |
| 3145 </param> | |
| 3146 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3147 </when> | |
| 3148 <when value="variety"> | |
| 3149 <param name="operation" type="select" label="Operator"> | |
| 3150 <option value="equal">equal</option> | |
| 3151 <option value="different">different</option> | |
| 3152 </param> | |
| 3153 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3154 </when> | |
| 3155 <when value="host"> | |
| 3156 <param name="operation" type="select" label="Operator"> | |
| 3157 <option value="equal">equal</option> | |
| 3158 <option value="different">different</option> | |
| 3159 </param> | |
| 3160 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3161 </when> | |
| 3162 <when value="organelle"> | |
| 3163 <param name="operation" type="select" label="Operator"> | |
| 3164 <option value="equal">equal</option> | |
| 3165 <option value="different">different</option> | |
| 3166 </param> | |
| 3167 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 3168 </when> | |
| 3169 <when value="serovar"> | |
| 3170 <param name="operation" type="select" label="Operator"> | |
| 3171 <option value="equal">equal</option> | |
| 3172 <option value="different">different</option> | |
| 3173 </param> | |
| 3174 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3175 </when> | |
| 3176 <when value="plasmid"> | |
| 3177 <param name="operation" type="select" label="Operator"> | |
| 3178 <option value="equal">equal</option> | |
| 3179 <option value="different">different</option> | |
| 3180 </param> | |
| 3181 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3182 </when> | |
| 3183 <when value="dataclass"> | |
| 3184 <param name="operation" type="select" label="Operator"> | |
| 3185 <option value="equal">equal</option> | |
| 3186 <option value="different">different</option> | |
| 3187 </param> | |
| 3188 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 3189 </when> | |
| 3190 <when value="culture_collection"> | |
| 3191 <param name="operation" type="select" label="Operator"> | |
| 3192 <option value="equal">equal</option> | |
| 3193 <option value="different">different</option> | |
| 3194 </param> | |
| 3195 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3196 </when> | |
| 3197 </conditional> | |
| 3198 </repeat> | |
| 3199 <conditional name="display_opt"> | |
| 3200 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 3201 <expand macro="display_options"/> | |
| 3202 </param> | |
| 3203 <when value="xml"> | |
| 3204 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3205 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3206 </when> | |
| 3207 <when value="text"> | |
| 3208 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3209 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3210 </when> | |
| 3211 <when value="fastq"/> | |
| 3212 <when value="html"> | |
| 3213 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3214 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3215 </when> | |
| 3216 <when value="report"> | |
| 3217 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3218 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3219 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 3220 <option value="accession">accession</option> | |
| 3221 <option value="base_count">base_count</option> | |
| 3222 <option value="bio_material">bio_material</option> | |
| 3223 <option value="cell_line">cell_line</option> | |
| 3224 <option value="cell_type">cell_type</option> | |
| 3225 <option value="collected_by">collected_by</option> | |
| 3226 <option value="collection_date">collection_date</option> | |
| 3227 <option value="country">country</option> | |
| 3228 <option value="cultivar">cultivar</option> | |
| 3229 <option value="culture_collection">culture_collection</option> | |
| 3230 <option value="dataclass">dataclass</option> | |
| 3231 <option value="description">description</option> | |
| 3232 <option value="dev_stage">dev_stage</option> | |
| 3233 <option value="ecotype">ecotype</option> | |
| 3234 <option value="environmental_sample">environmental_sample</option> | |
| 3235 <option value="first_public">first_public</option> | |
| 3236 <option value="germline">germline</option> | |
| 3237 <option value="host">host</option> | |
| 3238 <option value="identified_by">identified_by</option> | |
| 3239 <option value="isolate">isolate</option> | |
| 3240 <option value="isolation_source">isolation_source</option> | |
| 3241 <option value="keywords">keywords</option> | |
| 3242 <option value="lab_host">lab_host</option> | |
| 3243 <option value="last_updated">last_updated</option> | |
| 3244 <option value="location">location</option> | |
| 3245 <option value="mating_type">mating_type</option> | |
| 3246 <option value="mol_type">mol_type</option> | |
| 3247 <option value="organelle">organelle</option> | |
| 3248 <option value="serotype">serotype</option> | |
| 3249 <option value="serovar">serovar</option> | |
| 3250 <option value="sex">sex</option> | |
| 3251 <option value="submitted_sex">submitted_sex</option> | |
| 3252 <option value="specimen_voucher">specimen_voucher</option> | |
| 3253 <option value="strain">strain</option> | |
| 3254 <option value="sub_species">sub_species</option> | |
| 3255 <option value="sub_strain">sub_strain</option> | |
| 3256 <option value="tax_division">tax_division</option> | |
| 3257 <option value="tissue_lib">tissue_lib</option> | |
| 3258 <option value="tissue_type">tissue_type</option> | |
| 3259 <option value="topology">topology</option> | |
| 3260 <option value="variety">variety</option> | |
| 3261 <option value="tax_id">tax_id</option> | |
| 3262 <option value="scientific_name">scientific_name</option> | |
| 3263 <option value="altitude">altitude</option> | |
| 3264 <option value="haplotype">haplotype</option> | |
| 3265 <option value="plasmid">plasmid</option> | |
| 3266 <option value="study_accession">study_accession</option> | |
| 3267 <option value="sequence_md5">sequence_md5</option> | |
| 3268 </param> | |
| 3269 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 3270 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 3271 <option value="last_updated">date when last updated</option> | |
| 3272 <option value="sequence_md5"></option> | |
| 3273 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 3274 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 3275 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 3276 <option value="keywords">keywords associated with sequence</option> | |
| 3277 <option value="collected_by">name of the person who collected the specimen</option> | |
| 3278 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 3279 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 3280 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 3281 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 3282 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 3283 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 3284 <option value="tax_division">taxonomic division</option> | |
| 3285 <option value="collection_date">date that the specimen was collected</option> | |
| 3286 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 3287 <option value="altitude">Altitude (m)</option> | |
| 3288 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 3289 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 3290 <option value="location">geographic location of isolation of the sample</option> | |
| 3291 <option value="study_accession">study accession number</option> | |
| 3292 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 3293 <option value="description">brief sequence description</option> | |
| 3294 <option value="accession">accession number</option> | |
| 3295 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 3296 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 3297 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 3298 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 3299 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 3300 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 3301 <option value="base_count">number of base pairs</option> | |
| 3302 <option value="topology">sequence topology: circular or linear</option> | |
| 3303 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 3304 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 3305 <option value="first_public">date when made public</option> | |
| 3306 <option value="strain">strain from which sample was obtained</option> | |
| 3307 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 3308 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 3309 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 3310 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 3311 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 3312 <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option> | |
| 3313 <option value="dataclass">sequence data class</option> | |
| 3314 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 3315 </param> | |
| 3316 </when> | |
| 3317 <when value="fasta"/> | |
| 3318 </conditional> | |
| 3319 </when> | |
| 3320 <when value="wgs_set"> | |
| 3321 <repeat name="queries" title="Add a query"> | |
| 3322 <param name="combination_operation" type="select" label="Combination operation"> | |
| 3323 <option value="AND">AND</option> | |
| 3324 <option value="OR">OR</option> | |
| 3325 <option value="NOT">NOT</option> | |
| 3326 </param> | |
| 3327 <conditional name="filter_field"> | |
| 3328 <param name="field" type="select" label="Field to query"> | |
| 3329 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 3330 <option value="last_updated">date when last updated</option> | |
| 3331 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 3332 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 3333 <option value="accession">accession number</option> | |
| 3334 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 3335 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 3336 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 3337 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 3338 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 3339 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 3340 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 3341 <option value="tax_division">taxonomic division</option> | |
| 3342 <option value="collection_date">date that the specimen was collected</option> | |
| 3343 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 3344 <option value="altitude">Altitude (m)</option> | |
| 3345 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 3346 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 3347 <option value="location">geographic location of isolation of the sample</option> | |
| 3348 <option value="study_accession">study accession number</option> | |
| 3349 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 3350 <option value="description">brief sequence description</option> | |
| 3351 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 3352 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 3353 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 3354 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 3355 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 3356 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 3357 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 3358 <option value="collected_by">name of the person who collected the specimen</option> | |
| 3359 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 3360 <option value="first_public">date when made public</option> | |
| 3361 <option value="strain">strain from which sample was obtained</option> | |
| 3362 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 3363 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 3364 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 3365 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 3366 <option value="keywords">keywords associated with sequence</option> | |
| 3367 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 3368 </param> | |
| 3369 <when value="mol_type"> | |
| 3370 <param name="operation" type="select" label="Operator"> | |
| 3371 <option value="equal">equal</option> | |
| 3372 <option value="different">different</option> | |
| 3373 </param> | |
| 3374 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 3375 </when> | |
| 3376 <when value="last_updated"> | |
| 3377 <param name="operation" type="select" label="Operator"> | |
| 3378 <option value="equal">equal</option> | |
| 3379 <option value="different">different</option> | |
| 3380 <option value="lower">lower</option> | |
| 3381 <option value="equal or lower">equal or lower</option> | |
| 3382 <option value="higher">higher</option> | |
| 3383 <option value="equal or higher">equal or higher</option> | |
| 3384 </param> | |
| 3385 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 3386 </when> | |
| 3387 <when value="lab_host"> | |
| 3388 <param name="operation" type="select" label="Operator"> | |
| 3389 <option value="equal">equal</option> | |
| 3390 <option value="different">different</option> | |
| 3391 </param> | |
| 3392 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3393 </when> | |
| 3394 <when value="haplotype"> | |
| 3395 <param name="operation" type="select" label="Operator"> | |
| 3396 <option value="equal">equal</option> | |
| 3397 <option value="different">different</option> | |
| 3398 </param> | |
| 3399 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3400 </when> | |
| 3401 <when value="accession"> | |
| 3402 <param name="operation" type="select" label="Operator"> | |
| 3403 <option value="equal">equal</option> | |
| 3404 <option value="different">different</option> | |
| 3405 </param> | |
| 3406 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3407 </when> | |
| 3408 <when value="sex"> | |
| 3409 <param name="operation" type="select" label="Operator"> | |
| 3410 <option value="equal">equal</option> | |
| 3411 <option value="different">different</option> | |
| 3412 </param> | |
| 3413 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 3414 </when> | |
| 3415 <when value="cell_line"> | |
| 3416 <param name="operation" type="select" label="Operator"> | |
| 3417 <option value="equal">equal</option> | |
| 3418 <option value="different">different</option> | |
| 3419 </param> | |
| 3420 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3421 </when> | |
| 3422 <when value="host"> | |
| 3423 <param name="operation" type="select" label="Operator"> | |
| 3424 <option value="equal">equal</option> | |
| 3425 <option value="different">different</option> | |
| 3426 </param> | |
| 3427 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3428 </when> | |
| 3429 <when value="ecotype"> | |
| 3430 <param name="operation" type="select" label="Operator"> | |
| 3431 <option value="equal">equal</option> | |
| 3432 <option value="different">different</option> | |
| 3433 </param> | |
| 3434 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3435 </when> | |
| 3436 <when value="bio_material"> | |
| 3437 <param name="operation" type="select" label="Operator"> | |
| 3438 <option value="equal">equal</option> | |
| 3439 <option value="different">different</option> | |
| 3440 </param> | |
| 3441 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3442 </when> | |
| 3443 <when value="identified_by"> | |
| 3444 <param name="operation" type="select" label="Operator"> | |
| 3445 <option value="equal">equal</option> | |
| 3446 <option value="different">different</option> | |
| 3447 </param> | |
| 3448 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3449 </when> | |
| 3450 <when value="cell_type"> | |
| 3451 <param name="operation" type="select" label="Operator"> | |
| 3452 <option value="equal">equal</option> | |
| 3453 <option value="different">different</option> | |
| 3454 </param> | |
| 3455 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3456 </when> | |
| 3457 <when value="tax_division"> | |
| 3458 <param name="operation" type="select" label="Operator"> | |
| 3459 <option value="equal">equal</option> | |
| 3460 <option value="different">different</option> | |
| 3461 </param> | |
| 3462 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 3463 </when> | |
| 3464 <when value="collection_date"> | |
| 3465 <param name="operation" type="select" label="Operator"> | |
| 3466 <option value="equal">equal</option> | |
| 3467 <option value="different">different</option> | |
| 3468 <option value="lower">lower</option> | |
| 3469 <option value="equal or lower">equal or lower</option> | |
| 3470 <option value="higher">higher</option> | |
| 3471 <option value="equal or higher">equal or higher</option> | |
| 3472 </param> | |
| 3473 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 3474 </when> | |
| 3475 <when value="specimen_voucher"> | |
| 3476 <param name="operation" type="select" label="Operator"> | |
| 3477 <option value="equal">equal</option> | |
| 3478 <option value="different">different</option> | |
| 3479 </param> | |
| 3480 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3481 </when> | |
| 3482 <when value="altitude"> | |
| 3483 <param name="operation" type="select" label="Operator"> | |
| 3484 <option value="equal">equal</option> | |
| 3485 <option value="different">different</option> | |
| 3486 <option value="lower">lower</option> | |
| 3487 <option value="equal or lower">equal or lower</option> | |
| 3488 <option value="higher">higher</option> | |
| 3489 <option value="equal or higher">equal or higher</option> | |
| 3490 </param> | |
| 3491 <param name="value" type="float" value="" label="Any integer"/> | |
| 3492 </when> | |
| 3493 <when value="dev_stage"> | |
| 3494 <param name="operation" type="select" label="Operator"> | |
| 3495 <option value="equal">equal</option> | |
| 3496 <option value="different">different</option> | |
| 3497 </param> | |
| 3498 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3499 </when> | |
| 3500 <when value="isolate"> | |
| 3501 <param name="operation" type="select" label="Operator"> | |
| 3502 <option value="equal">equal</option> | |
| 3503 <option value="different">different</option> | |
| 3504 </param> | |
| 3505 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3506 </when> | |
| 3507 <when value="location"> | |
| 3508 <conditional name="op"> | |
| 3509 <param name="operation" type="select" label="Operation"> | |
| 3510 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 3511 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 3512 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 3513 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 3514 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 3515 <option value="geo_point">An exact lat/lon position</option> | |
| 3516 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 3517 </param> | |
| 3518 <when value="geo_box2"> | |
| 3519 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 3520 </when> | |
| 3521 <when value="geo_box1"> | |
| 3522 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 3523 </when> | |
| 3524 <when value="geo_circ"> | |
| 3525 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 3526 </when> | |
| 3527 <when value="geo_lat"> | |
| 3528 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 3529 </when> | |
| 3530 <when value="geo_south"> | |
| 3531 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 3532 </when> | |
| 3533 <when value="geo_point"> | |
| 3534 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 3535 </when> | |
| 3536 <when value="geo_north"> | |
| 3537 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 3538 </when> | |
| 3539 </conditional> | |
| 3540 </when> | |
| 3541 <when value="study_accession"> | |
| 3542 <param name="operation" type="select" label="Operator"> | |
| 3543 <option value="equal">equal</option> | |
| 3544 <option value="different">different</option> | |
| 3545 </param> | |
| 3546 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3547 </when> | |
| 3548 <when value="germline"> | |
| 3549 <param name="operation" type="select" label="Operator"> | |
| 3550 <option value="equal">equal</option> | |
| 3551 </param> | |
| 3552 <param name="value" type="select" label="Value"> | |
| 3553 <option value="yes">yes</option> | |
| 3554 <option value="true">true</option> | |
| 3555 <option value="no">no</option> | |
| 3556 <option value="false">false</option> | |
| 3557 </param> | |
| 3558 </when> | |
| 3559 <when value="description"> | |
| 3560 <param name="operation" type="select" label="Operator"> | |
| 3561 <option value="equal">equal</option> | |
| 3562 <option value="different">different</option> | |
| 3563 </param> | |
| 3564 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3565 </when> | |
| 3566 <when value="tissue_lib"> | |
| 3567 <param name="operation" type="select" label="Operator"> | |
| 3568 <option value="equal">equal</option> | |
| 3569 <option value="different">different</option> | |
| 3570 </param> | |
| 3571 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3572 </when> | |
| 3573 <when value="isolation_source"> | |
| 3574 <param name="operation" type="select" label="Operator"> | |
| 3575 <option value="equal">equal</option> | |
| 3576 <option value="different">different</option> | |
| 3577 </param> | |
| 3578 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3579 </when> | |
| 3580 <when value="mating_type"> | |
| 3581 <param name="operation" type="select" label="Operator"> | |
| 3582 <option value="equal">equal</option> | |
| 3583 <option value="different">different</option> | |
| 3584 </param> | |
| 3585 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3586 </when> | |
| 3587 <when value="serovar"> | |
| 3588 <param name="operation" type="select" label="Operator"> | |
| 3589 <option value="equal">equal</option> | |
| 3590 <option value="different">different</option> | |
| 3591 </param> | |
| 3592 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3593 </when> | |
| 3594 <when value="serotype"> | |
| 3595 <param name="operation" type="select" label="Operator"> | |
| 3596 <option value="equal">equal</option> | |
| 3597 <option value="different">different</option> | |
| 3598 </param> | |
| 3599 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3600 </when> | |
| 3601 <when value="sub_strain"> | |
| 3602 <param name="operation" type="select" label="Operator"> | |
| 3603 <option value="equal">equal</option> | |
| 3604 <option value="different">different</option> | |
| 3605 </param> | |
| 3606 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3607 </when> | |
| 3608 <when value="cultivar"> | |
| 3609 <param name="operation" type="select" label="Operator"> | |
| 3610 <option value="equal">equal</option> | |
| 3611 <option value="different">different</option> | |
| 3612 </param> | |
| 3613 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3614 </when> | |
| 3615 <when value="collected_by"> | |
| 3616 <param name="operation" type="select" label="Operator"> | |
| 3617 <option value="equal">equal</option> | |
| 3618 <option value="different">different</option> | |
| 3619 </param> | |
| 3620 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3621 </when> | |
| 3622 <when value="sub_species"> | |
| 3623 <param name="operation" type="select" label="Operator"> | |
| 3624 <option value="equal">equal</option> | |
| 3625 <option value="different">different</option> | |
| 3626 </param> | |
| 3627 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3628 </when> | |
| 3629 <when value="first_public"> | |
| 3630 <param name="operation" type="select" label="Operator"> | |
| 3631 <option value="equal">equal</option> | |
| 3632 <option value="different">different</option> | |
| 3633 <option value="lower">lower</option> | |
| 3634 <option value="equal or lower">equal or lower</option> | |
| 3635 <option value="higher">higher</option> | |
| 3636 <option value="equal or higher">equal or higher</option> | |
| 3637 </param> | |
| 3638 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 3639 </when> | |
| 3640 <when value="strain"> | |
| 3641 <param name="operation" type="select" label="Operator"> | |
| 3642 <option value="equal">equal</option> | |
| 3643 <option value="different">different</option> | |
| 3644 </param> | |
| 3645 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3646 </when> | |
| 3647 <when value="country"> | |
| 3648 <param name="operation" type="select" label="Operator"> | |
| 3649 <option value="equal">equal</option> | |
| 3650 <option value="different">different</option> | |
| 3651 </param> | |
| 3652 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3653 </when> | |
| 3654 <when value="variety"> | |
| 3655 <param name="operation" type="select" label="Operator"> | |
| 3656 <option value="equal">equal</option> | |
| 3657 <option value="different">different</option> | |
| 3658 </param> | |
| 3659 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3660 </when> | |
| 3661 <when value="environmental_sample"> | |
| 3662 <param name="operation" type="select" label="Operator"> | |
| 3663 <option value="equal">equal</option> | |
| 3664 </param> | |
| 3665 <param name="value" type="select" label="Value"> | |
| 3666 <option value="yes">yes</option> | |
| 3667 <option value="true">true</option> | |
| 3668 <option value="no">no</option> | |
| 3669 <option value="false">false</option> | |
| 3670 </param> | |
| 3671 </when> | |
| 3672 <when value="tissue_type"> | |
| 3673 <param name="operation" type="select" label="Operator"> | |
| 3674 <option value="equal">equal</option> | |
| 3675 <option value="different">different</option> | |
| 3676 </param> | |
| 3677 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3678 </when> | |
| 3679 <when value="keywords"> | |
| 3680 <param name="operation" type="select" label="Operator"> | |
| 3681 <option value="equal">equal</option> | |
| 3682 <option value="different">different</option> | |
| 3683 </param> | |
| 3684 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3685 </when> | |
| 3686 <when value="culture_collection"> | |
| 3687 <param name="operation" type="select" label="Operator"> | |
| 3688 <option value="equal">equal</option> | |
| 3689 <option value="different">different</option> | |
| 3690 </param> | |
| 3691 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3692 </when> | |
| 3693 </conditional> | |
| 3694 </repeat> | |
| 3695 <conditional name="display_opt"> | |
| 3696 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 3697 <expand macro="display_options"/> | |
| 3698 </param> | |
| 3699 <when value="xml"> | |
| 3700 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3701 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3702 </when> | |
| 3703 <when value="text"> | |
| 3704 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3705 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3706 </when> | |
| 3707 <when value="fastq"/> | |
| 3708 <when value="html"> | |
| 3709 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3710 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3711 </when> | |
| 3712 <when value="report"> | |
| 3713 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3714 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3715 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 3716 <option value="accession">accession</option> | |
| 3717 <option value="bio_material">bio_material</option> | |
| 3718 <option value="cell_line">cell_line</option> | |
| 3719 <option value="cell_type">cell_type</option> | |
| 3720 <option value="collected_by">collected_by</option> | |
| 3721 <option value="collection_date">collection_date</option> | |
| 3722 <option value="country">country</option> | |
| 3723 <option value="cultivar">cultivar</option> | |
| 3724 <option value="culture_collection">culture_collection</option> | |
| 3725 <option value="description">description</option> | |
| 3726 <option value="dev_stage">dev_stage</option> | |
| 3727 <option value="ecotype">ecotype</option> | |
| 3728 <option value="environmental_sample">environmental_sample</option> | |
| 3729 <option value="first_public">first_public</option> | |
| 3730 <option value="germline">germline</option> | |
| 3731 <option value="host">host</option> | |
| 3732 <option value="identified_by">identified_by</option> | |
| 3733 <option value="isolate">isolate</option> | |
| 3734 <option value="isolation_source">isolation_source</option> | |
| 3735 <option value="keywords">keywords</option> | |
| 3736 <option value="lab_host">lab_host</option> | |
| 3737 <option value="last_updated">last_updated</option> | |
| 3738 <option value="location">location</option> | |
| 3739 <option value="mating_type">mating_type</option> | |
| 3740 <option value="mol_type">mol_type</option> | |
| 3741 <option value="serotype">serotype</option> | |
| 3742 <option value="serovar">serovar</option> | |
| 3743 <option value="sex">sex</option> | |
| 3744 <option value="submitted_sex">submitted_sex</option> | |
| 3745 <option value="specimen_voucher">specimen_voucher</option> | |
| 3746 <option value="strain">strain</option> | |
| 3747 <option value="sub_species">sub_species</option> | |
| 3748 <option value="sub_strain">sub_strain</option> | |
| 3749 <option value="tax_division">tax_division</option> | |
| 3750 <option value="tissue_lib">tissue_lib</option> | |
| 3751 <option value="tissue_type">tissue_type</option> | |
| 3752 <option value="variety">variety</option> | |
| 3753 <option value="tax_id">tax_id</option> | |
| 3754 <option value="scientific_name">scientific_name</option> | |
| 3755 <option value="altitude">altitude</option> | |
| 3756 <option value="haplotype">haplotype</option> | |
| 3757 <option value="study_accession">study_accession</option> | |
| 3758 <option value="set_files">set_files</option> | |
| 3759 </param> | |
| 3760 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 3761 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 3762 <option value="last_updated">date when last updated</option> | |
| 3763 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 3764 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 3765 <option value="accession">accession number</option> | |
| 3766 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 3767 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 3768 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 3769 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 3770 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 3771 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 3772 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 3773 <option value="tax_division">taxonomic division</option> | |
| 3774 <option value="collection_date">date that the specimen was collected</option> | |
| 3775 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 3776 <option value="altitude">Altitude (m)</option> | |
| 3777 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 3778 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 3779 <option value="location">geographic location of isolation of the sample</option> | |
| 3780 <option value="study_accession">study accession number</option> | |
| 3781 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 3782 <option value="description">brief sequence description</option> | |
| 3783 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 3784 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 3785 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 3786 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 3787 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 3788 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 3789 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 3790 <option value="collected_by">name of the person who collected the specimen</option> | |
| 3791 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 3792 <option value="first_public">date when made public</option> | |
| 3793 <option value="strain">strain from which sample was obtained</option> | |
| 3794 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 3795 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 3796 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 3797 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 3798 <option value="keywords">keywords associated with sequence</option> | |
| 3799 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 3800 </param> | |
| 3801 </when> | |
| 3802 <when value="fasta"/> | |
| 3803 </conditional> | |
| 3804 </when> | |
| 3805 <when value="study"> | |
| 3806 <repeat name="queries" title="Add a query"> | |
| 3807 <param name="combination_operation" type="select" label="Combination operation"> | |
| 3808 <option value="AND">AND</option> | |
| 3809 <option value="OR">OR</option> | |
| 3810 <option value="NOT">NOT</option> | |
| 3811 </param> | |
| 3812 <conditional name="filter_field"> | |
| 3813 <param name="field" type="select" label="Field to query"> | |
| 3814 <option value="broker_name">broker name</option> | |
| 3815 <option value="last_updated">date when last updated</option> | |
| 3816 <option value="center_name">Submitting center</option> | |
| 3817 <option value="study_description">detailed sequencing study description</option> | |
| 3818 <option value="breed">breed</option> | |
| 3819 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 3820 <option value="study_name">sequencing study name</option> | |
| 3821 <option value="geo_accession">GEO accession</option> | |
| 3822 <option value="strain">strain from which sample was obtained</option> | |
| 3823 <option value="secondary_study_accession">project accession number</option> | |
| 3824 <option value="keywords">keywords associated with sequence</option> | |
| 3825 <option value="study_title">brief sequencing study description</option> | |
| 3826 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 3827 <option value="study_accession">study accession number</option> | |
| 3828 </param> | |
| 3829 <when value="broker_name"> | |
| 3830 <param name="operation" type="select" label="Operator"> | |
| 3831 <option value="equal">equal</option> | |
| 3832 <option value="different">different</option> | |
| 3833 </param> | |
| 3834 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 3835 </when> | |
| 3836 <when value="last_updated"> | |
| 3837 <param name="operation" type="select" label="Operator"> | |
| 3838 <option value="equal">equal</option> | |
| 3839 <option value="different">different</option> | |
| 3840 <option value="lower">lower</option> | |
| 3841 <option value="equal or lower">equal or lower</option> | |
| 3842 <option value="higher">higher</option> | |
| 3843 <option value="equal or higher">equal or higher</option> | |
| 3844 </param> | |
| 3845 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 3846 </when> | |
| 3847 <when value="center_name"> | |
| 3848 <param name="operation" type="select" label="Operator"> | |
| 3849 <option value="equal">equal</option> | |
| 3850 <option value="different">different</option> | |
| 3851 </param> | |
| 3852 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3853 </when> | |
| 3854 <when value="study_description"> | |
| 3855 <param name="operation" type="select" label="Operator"> | |
| 3856 <option value="equal">equal</option> | |
| 3857 <option value="different">different</option> | |
| 3858 </param> | |
| 3859 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3860 </when> | |
| 3861 <when value="breed"> | |
| 3862 <param name="operation" type="select" label="Operator"> | |
| 3863 <option value="equal">equal</option> | |
| 3864 <option value="different">different</option> | |
| 3865 </param> | |
| 3866 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3867 </when> | |
| 3868 <when value="isolate"> | |
| 3869 <param name="operation" type="select" label="Operator"> | |
| 3870 <option value="equal">equal</option> | |
| 3871 <option value="different">different</option> | |
| 3872 </param> | |
| 3873 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3874 </when> | |
| 3875 <when value="study_name"> | |
| 3876 <param name="operation" type="select" label="Operator"> | |
| 3877 <option value="equal">equal</option> | |
| 3878 <option value="different">different</option> | |
| 3879 </param> | |
| 3880 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3881 </when> | |
| 3882 <when value="geo_accession"> | |
| 3883 <param name="operation" type="select" label="Operator"> | |
| 3884 <option value="equal">equal</option> | |
| 3885 <option value="different">different</option> | |
| 3886 </param> | |
| 3887 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3888 </when> | |
| 3889 <when value="strain"> | |
| 3890 <param name="operation" type="select" label="Operator"> | |
| 3891 <option value="equal">equal</option> | |
| 3892 <option value="different">different</option> | |
| 3893 </param> | |
| 3894 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3895 </when> | |
| 3896 <when value="secondary_study_accession"> | |
| 3897 <param name="operation" type="select" label="Operator"> | |
| 3898 <option value="equal">equal</option> | |
| 3899 <option value="different">different</option> | |
| 3900 </param> | |
| 3901 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3902 </when> | |
| 3903 <when value="keywords"> | |
| 3904 <param name="operation" type="select" label="Operator"> | |
| 3905 <option value="equal">equal</option> | |
| 3906 <option value="different">different</option> | |
| 3907 </param> | |
| 3908 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3909 </when> | |
| 3910 <when value="study_title"> | |
| 3911 <param name="operation" type="select" label="Operator"> | |
| 3912 <option value="equal">equal</option> | |
| 3913 <option value="different">different</option> | |
| 3914 </param> | |
| 3915 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3916 </when> | |
| 3917 <when value="cultivar"> | |
| 3918 <param name="operation" type="select" label="Operator"> | |
| 3919 <option value="equal">equal</option> | |
| 3920 <option value="different">different</option> | |
| 3921 </param> | |
| 3922 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3923 </when> | |
| 3924 <when value="study_accession"> | |
| 3925 <param name="operation" type="select" label="Operator"> | |
| 3926 <option value="equal">equal</option> | |
| 3927 <option value="different">different</option> | |
| 3928 </param> | |
| 3929 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 3930 </when> | |
| 3931 </conditional> | |
| 3932 </repeat> | |
| 3933 <conditional name="display_opt"> | |
| 3934 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 3935 <expand macro="display_options"/> | |
| 3936 </param> | |
| 3937 <when value="xml"> | |
| 3938 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3939 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3940 </when> | |
| 3941 <when value="text"> | |
| 3942 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3943 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3944 </when> | |
| 3945 <when value="fastq"/> | |
| 3946 <when value="html"> | |
| 3947 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3948 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3949 </when> | |
| 3950 <when value="report"> | |
| 3951 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 3952 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 3953 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 3954 <option value="study_accession">study_accession</option> | |
| 3955 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 3956 <option value="study_description">study_description</option> | |
| 3957 <option value="study_name">study_name</option> | |
| 3958 <option value="study_title">study_title</option> | |
| 3959 <option value="tax_id">tax_id</option> | |
| 3960 <option value="scientific_name">scientific_name</option> | |
| 3961 <option value="strain">strain</option> | |
| 3962 <option value="breed">breed</option> | |
| 3963 <option value="cultivar">cultivar</option> | |
| 3964 <option value="isolate">isolate</option> | |
| 3965 <option value="center_name">center_name</option> | |
| 3966 <option value="broker_name">broker_name</option> | |
| 3967 <option value="keywords">keywords</option> | |
| 3968 <option value="geo_accession">geo_accession</option> | |
| 3969 <option value="last_updated">last_updated</option> | |
| 3970 </param> | |
| 3971 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 3972 <option value="broker_name">broker name</option> | |
| 3973 <option value="last_updated">date when last updated</option> | |
| 3974 <option value="center_name">Submitting center</option> | |
| 3975 <option value="study_description">detailed sequencing study description</option> | |
| 3976 <option value="breed">breed</option> | |
| 3977 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 3978 <option value="study_name">sequencing study name</option> | |
| 3979 <option value="geo_accession">GEO accession</option> | |
| 3980 <option value="strain">strain from which sample was obtained</option> | |
| 3981 <option value="secondary_study_accession">project accession number</option> | |
| 3982 <option value="keywords">keywords associated with sequence</option> | |
| 3983 <option value="study_title">brief sequencing study description</option> | |
| 3984 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 3985 <option value="study_accession">study accession number</option> | |
| 3986 </param> | |
| 3987 </when> | |
| 3988 <when value="fasta"/> | |
| 3989 </conditional> | |
| 3990 </when> | |
| 3991 <when value="taxon"> | |
| 3992 <repeat name="queries" title="Add a query"> | |
| 3993 <param name="combination_operation" type="select" label="Combination operation"> | |
| 3994 <option value="AND">AND</option> | |
| 3995 <option value="OR">OR</option> | |
| 3996 <option value="NOT">NOT</option> | |
| 3997 </param> | |
| 3998 <conditional name="filter_field"> | |
| 3999 <param name="field" type="select" label="Field to query"> | |
| 4000 </param> | |
| 4001 </conditional> | |
| 4002 </repeat> | |
| 4003 <conditional name="display_opt"> | |
| 4004 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 4005 <expand macro="display_options"/> | |
| 4006 </param> | |
| 4007 <when value="xml"> | |
| 4008 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 4009 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 4010 </when> | |
| 4011 <when value="text"> | |
| 4012 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 4013 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 4014 </when> | |
| 4015 <when value="fastq"/> | |
| 4016 <when value="html"> | |
| 4017 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 4018 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 4019 </when> | |
| 4020 <when value="report"> | |
| 4021 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 4022 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 4023 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 4024 <option value="tax_id">tax_id</option> | |
| 4025 <option value="taxon_title">taxon_title</option> | |
| 4026 <option value="scientific_name">scientific_name</option> | |
| 4027 </param> | |
| 4028 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 4029 </param> | |
| 4030 </when> | |
| 4031 <when value="fasta"/> | |
| 4032 </conditional> | |
| 4033 </when> | |
| 4034 <when value="coding_release"> | |
| 4035 <repeat name="queries" title="Add a query"> | |
| 4036 <param name="combination_operation" type="select" label="Combination operation"> | |
| 4037 <option value="AND">AND</option> | |
| 4038 <option value="OR">OR</option> | |
| 4039 <option value="NOT">NOT</option> | |
| 4040 </param> | |
| 4041 <conditional name="filter_field"> | |
| 4042 <param name="field" type="select" label="Field to query"> | |
| 4043 <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option> | |
| 4044 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 4045 <option value="last_updated">date when last updated</option> | |
| 4046 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 4047 <option value="transl_except">a single codon translation that does not conform to genetic code</option> | |
| 4048 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 4049 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 4050 <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option> | |
| 4051 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 4052 <option value="pseudo_gene">indicates that this feature is a pseudogene</option> | |
| 4053 <option value="standard_name">accepted standard name for a feature</option> | |
| 4054 <option value="collected_by">name of the person who collected the specimen</option> | |
| 4055 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 4056 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 4057 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 4058 <option value="inference">a structured description of non-experimental evidence</option> | |
| 4059 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 4060 <option value="parent_accession">parent sequence accession number</option> | |
| 4061 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 4062 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 4063 <option value="sequence_md5"></option> | |
| 4064 <option value="tax_division">taxonomic division</option> | |
| 4065 <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 4066 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 4067 <option value="altitude">Altitude (m)</option> | |
| 4068 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 4069 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 4070 <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option> | |
| 4071 <option value="note">any comment or additional information</option> | |
| 4072 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 4073 <option value="location">geographic location of isolation of the sample</option> | |
| 4074 <option value="collection_date">date that the specimen was collected</option> | |
| 4075 <option value="allele">name of the allele for the given gene</option> | |
| 4076 <option value="protein_id">a stable protein identifier issued by INSDC</option> | |
| 4077 <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option> | |
| 4078 <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option> | |
| 4079 <option value="function">function attributed to a sequence</option> | |
| 4080 <option value="map">genomic map position of feature</option> | |
| 4081 <option value="product">name of the product associated with the feature</option> | |
| 4082 <option value="description">brief sequence description</option> | |
| 4083 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 4084 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 4085 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 4086 <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option> | |
| 4087 <option value="accession">accession number</option> | |
| 4088 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 4089 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 4090 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 4091 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 4092 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 4093 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 4094 <option value="base_count">number of base pairs</option> | |
| 4095 <option value="topology">sequence topology: circular or linear</option> | |
| 4096 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 4097 <option value="first_public">date when made public</option> | |
| 4098 <option value="strain">strain from which sample was obtained</option> | |
| 4099 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 4100 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 4101 <option value="pseudo">the feature is non-functional</option> | |
| 4102 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 4103 <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option> | |
| 4104 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 4105 <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option> | |
| 4106 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 4107 <option value="keywords">keywords associated with sequence</option> | |
| 4108 <option value="dataclass">sequence data class</option> | |
| 4109 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 4110 <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option> | |
| 4111 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 4112 </param> | |
| 4113 <when value="operon"> | |
| 4114 <param name="operation" type="select" label="Operator"> | |
| 4115 <option value="equal">equal</option> | |
| 4116 <option value="different">different</option> | |
| 4117 </param> | |
| 4118 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4119 </when> | |
| 4120 <when value="mol_type"> | |
| 4121 <param name="operation" type="select" label="Operator"> | |
| 4122 <option value="equal">equal</option> | |
| 4123 <option value="different">different</option> | |
| 4124 </param> | |
| 4125 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4126 </when> | |
| 4127 <when value="last_updated"> | |
| 4128 <param name="operation" type="select" label="Operator"> | |
| 4129 <option value="equal">equal</option> | |
| 4130 <option value="different">different</option> | |
| 4131 <option value="lower">lower</option> | |
| 4132 <option value="equal or lower">equal or lower</option> | |
| 4133 <option value="higher">higher</option> | |
| 4134 <option value="equal or higher">equal or higher</option> | |
| 4135 </param> | |
| 4136 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 4137 </when> | |
| 4138 <when value="lab_host"> | |
| 4139 <param name="operation" type="select" label="Operator"> | |
| 4140 <option value="equal">equal</option> | |
| 4141 <option value="different">different</option> | |
| 4142 </param> | |
| 4143 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4144 </when> | |
| 4145 <when value="transl_except"> | |
| 4146 <param name="operation" type="select" label="Operator"> | |
| 4147 <option value="equal">equal</option> | |
| 4148 <option value="different">different</option> | |
| 4149 </param> | |
| 4150 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4151 </when> | |
| 4152 <when value="haplotype"> | |
| 4153 <param name="operation" type="select" label="Operator"> | |
| 4154 <option value="equal">equal</option> | |
| 4155 <option value="different">different</option> | |
| 4156 </param> | |
| 4157 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4158 </when> | |
| 4159 <when value="serotype"> | |
| 4160 <param name="operation" type="select" label="Operator"> | |
| 4161 <option value="equal">equal</option> | |
| 4162 <option value="different">different</option> | |
| 4163 </param> | |
| 4164 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4165 </when> | |
| 4166 <when value="trans_splicing"> | |
| 4167 <param name="operation" type="select" label="Operator"> | |
| 4168 <option value="equal">equal</option> | |
| 4169 </param> | |
| 4170 <param name="value" type="select" label="Value"> | |
| 4171 <option value="yes">yes</option> | |
| 4172 <option value="true">true</option> | |
| 4173 <option value="no">no</option> | |
| 4174 <option value="false">false</option> | |
| 4175 </param> | |
| 4176 </when> | |
| 4177 <when value="sex"> | |
| 4178 <param name="operation" type="select" label="Operator"> | |
| 4179 <option value="equal">equal</option> | |
| 4180 <option value="different">different</option> | |
| 4181 </param> | |
| 4182 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4183 </when> | |
| 4184 <when value="pseudo_gene"> | |
| 4185 <param name="operation" type="select" label="Operator"> | |
| 4186 <option value="equal">equal</option> | |
| 4187 <option value="different">different</option> | |
| 4188 </param> | |
| 4189 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4190 </when> | |
| 4191 <when value="standard_name"> | |
| 4192 <param name="operation" type="select" label="Operator"> | |
| 4193 <option value="equal">equal</option> | |
| 4194 <option value="different">different</option> | |
| 4195 </param> | |
| 4196 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4197 </when> | |
| 4198 <when value="collected_by"> | |
| 4199 <param name="operation" type="select" label="Operator"> | |
| 4200 <option value="equal">equal</option> | |
| 4201 <option value="different">different</option> | |
| 4202 </param> | |
| 4203 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4204 </when> | |
| 4205 <when value="germline"> | |
| 4206 <param name="operation" type="select" label="Operator"> | |
| 4207 <option value="equal">equal</option> | |
| 4208 </param> | |
| 4209 <param name="value" type="select" label="Value"> | |
| 4210 <option value="yes">yes</option> | |
| 4211 <option value="true">true</option> | |
| 4212 <option value="no">no</option> | |
| 4213 <option value="false">false</option> | |
| 4214 </param> | |
| 4215 </when> | |
| 4216 <when value="cell_type"> | |
| 4217 <param name="operation" type="select" label="Operator"> | |
| 4218 <option value="equal">equal</option> | |
| 4219 <option value="different">different</option> | |
| 4220 </param> | |
| 4221 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4222 </when> | |
| 4223 <when value="host"> | |
| 4224 <param name="operation" type="select" label="Operator"> | |
| 4225 <option value="equal">equal</option> | |
| 4226 <option value="different">different</option> | |
| 4227 </param> | |
| 4228 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4229 </when> | |
| 4230 <when value="inference"> | |
| 4231 <param name="operation" type="select" label="Operator"> | |
| 4232 <option value="equal">equal</option> | |
| 4233 <option value="different">different</option> | |
| 4234 </param> | |
| 4235 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4236 </when> | |
| 4237 <when value="bio_material"> | |
| 4238 <param name="operation" type="select" label="Operator"> | |
| 4239 <option value="equal">equal</option> | |
| 4240 <option value="different">different</option> | |
| 4241 </param> | |
| 4242 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4243 </when> | |
| 4244 <when value="parent_accession"> | |
| 4245 <param name="operation" type="select" label="Operator"> | |
| 4246 <option value="equal">equal</option> | |
| 4247 <option value="different">different</option> | |
| 4248 </param> | |
| 4249 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4250 </when> | |
| 4251 <when value="identified_by"> | |
| 4252 <param name="operation" type="select" label="Operator"> | |
| 4253 <option value="equal">equal</option> | |
| 4254 <option value="different">different</option> | |
| 4255 </param> | |
| 4256 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4257 </when> | |
| 4258 <when value="locus_tag"> | |
| 4259 <param name="operation" type="select" label="Operator"> | |
| 4260 <option value="equal">equal</option> | |
| 4261 <option value="different">different</option> | |
| 4262 </param> | |
| 4263 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4264 </when> | |
| 4265 <when value="sequence_md5"> | |
| 4266 <param name="operation" type="select" label="Operator"> | |
| 4267 <option value="equal">equal</option> | |
| 4268 <option value="different">different</option> | |
| 4269 </param> | |
| 4270 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4271 </when> | |
| 4272 <when value="tax_division"> | |
| 4273 <param name="operation" type="select" label="Operator"> | |
| 4274 <option value="equal">equal</option> | |
| 4275 <option value="different">different</option> | |
| 4276 </param> | |
| 4277 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4278 </when> | |
| 4279 <when value="old_locus_tag"> | |
| 4280 <param name="operation" type="select" label="Operator"> | |
| 4281 <option value="equal">equal</option> | |
| 4282 <option value="different">different</option> | |
| 4283 </param> | |
| 4284 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4285 </when> | |
| 4286 <when value="specimen_voucher"> | |
| 4287 <param name="operation" type="select" label="Operator"> | |
| 4288 <option value="equal">equal</option> | |
| 4289 <option value="different">different</option> | |
| 4290 </param> | |
| 4291 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4292 </when> | |
| 4293 <when value="altitude"> | |
| 4294 <param name="operation" type="select" label="Operator"> | |
| 4295 <option value="equal">equal</option> | |
| 4296 <option value="different">different</option> | |
| 4297 <option value="lower">lower</option> | |
| 4298 <option value="equal or lower">equal or lower</option> | |
| 4299 <option value="higher">higher</option> | |
| 4300 <option value="equal or higher">equal or higher</option> | |
| 4301 </param> | |
| 4302 <param name="value" type="float" value="" label="Any integer"/> | |
| 4303 </when> | |
| 4304 <when value="dev_stage"> | |
| 4305 <param name="operation" type="select" label="Operator"> | |
| 4306 <option value="equal">equal</option> | |
| 4307 <option value="different">different</option> | |
| 4308 </param> | |
| 4309 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4310 </when> | |
| 4311 <when value="isolate"> | |
| 4312 <param name="operation" type="select" label="Operator"> | |
| 4313 <option value="equal">equal</option> | |
| 4314 <option value="different">different</option> | |
| 4315 </param> | |
| 4316 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4317 </when> | |
| 4318 <when value="ec_number"> | |
| 4319 <param name="operation" type="select" label="Operator"> | |
| 4320 <option value="equal">equal</option> | |
| 4321 <option value="different">different</option> | |
| 4322 </param> | |
| 4323 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4324 </when> | |
| 4325 <when value="note"> | |
| 4326 <param name="operation" type="select" label="Operator"> | |
| 4327 <option value="equal">equal</option> | |
| 4328 <option value="different">different</option> | |
| 4329 </param> | |
| 4330 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4331 </when> | |
| 4332 <when value="experiment"> | |
| 4333 <param name="operation" type="select" label="Operator"> | |
| 4334 <option value="equal">equal</option> | |
| 4335 <option value="different">different</option> | |
| 4336 </param> | |
| 4337 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4338 </when> | |
| 4339 <when value="location"> | |
| 4340 <conditional name="op"> | |
| 4341 <param name="operation" type="select" label="Operation"> | |
| 4342 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 4343 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 4344 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 4345 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 4346 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 4347 <option value="geo_point">An exact lat/lon position</option> | |
| 4348 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 4349 </param> | |
| 4350 <when value="geo_box2"> | |
| 4351 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 4352 </when> | |
| 4353 <when value="geo_box1"> | |
| 4354 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 4355 </when> | |
| 4356 <when value="geo_circ"> | |
| 4357 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 4358 </when> | |
| 4359 <when value="geo_lat"> | |
| 4360 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 4361 </when> | |
| 4362 <when value="geo_south"> | |
| 4363 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 4364 </when> | |
| 4365 <when value="geo_point"> | |
| 4366 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 4367 </when> | |
| 4368 <when value="geo_north"> | |
| 4369 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 4370 </when> | |
| 4371 </conditional> | |
| 4372 </when> | |
| 4373 <when value="collection_date"> | |
| 4374 <param name="operation" type="select" label="Operator"> | |
| 4375 <option value="equal">equal</option> | |
| 4376 <option value="different">different</option> | |
| 4377 <option value="lower">lower</option> | |
| 4378 <option value="equal or lower">equal or lower</option> | |
| 4379 <option value="higher">higher</option> | |
| 4380 <option value="equal or higher">equal or higher</option> | |
| 4381 </param> | |
| 4382 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 4383 </when> | |
| 4384 <when value="allele"> | |
| 4385 <param name="operation" type="select" label="Operator"> | |
| 4386 <option value="equal">equal</option> | |
| 4387 <option value="different">different</option> | |
| 4388 </param> | |
| 4389 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4390 </when> | |
| 4391 <when value="protein_id"> | |
| 4392 <param name="operation" type="select" label="Operator"> | |
| 4393 <option value="equal">equal</option> | |
| 4394 <option value="different">different</option> | |
| 4395 </param> | |
| 4396 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4397 </when> | |
| 4398 <when value="partial"> | |
| 4399 <param name="operation" type="select" label="Operator"> | |
| 4400 <option value="equal">equal</option> | |
| 4401 </param> | |
| 4402 <param name="value" type="select" label="Value"> | |
| 4403 <option value="yes">yes</option> | |
| 4404 <option value="true">true</option> | |
| 4405 <option value="no">no</option> | |
| 4406 <option value="false">false</option> | |
| 4407 </param> | |
| 4408 </when> | |
| 4409 <when value="artificial_location"> | |
| 4410 <param name="operation" type="select" label="Operator"> | |
| 4411 <option value="equal">equal</option> | |
| 4412 <option value="different">different</option> | |
| 4413 </param> | |
| 4414 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4415 </when> | |
| 4416 <when value="function"> | |
| 4417 <param name="operation" type="select" label="Operator"> | |
| 4418 <option value="equal">equal</option> | |
| 4419 <option value="different">different</option> | |
| 4420 </param> | |
| 4421 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4422 </when> | |
| 4423 <when value="map"> | |
| 4424 <param name="operation" type="select" label="Operator"> | |
| 4425 <option value="equal">equal</option> | |
| 4426 <option value="different">different</option> | |
| 4427 </param> | |
| 4428 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4429 </when> | |
| 4430 <when value="product"> | |
| 4431 <param name="operation" type="select" label="Operator"> | |
| 4432 <option value="equal">equal</option> | |
| 4433 <option value="different">different</option> | |
| 4434 </param> | |
| 4435 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4436 </when> | |
| 4437 <when value="description"> | |
| 4438 <param name="operation" type="select" label="Operator"> | |
| 4439 <option value="equal">equal</option> | |
| 4440 <option value="different">different</option> | |
| 4441 </param> | |
| 4442 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4443 </when> | |
| 4444 <when value="cell_line"> | |
| 4445 <param name="operation" type="select" label="Operator"> | |
| 4446 <option value="equal">equal</option> | |
| 4447 <option value="different">different</option> | |
| 4448 </param> | |
| 4449 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4450 </when> | |
| 4451 <when value="gene_synonym"> | |
| 4452 <param name="operation" type="select" label="Operator"> | |
| 4453 <option value="equal">equal</option> | |
| 4454 <option value="different">different</option> | |
| 4455 </param> | |
| 4456 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4457 </when> | |
| 4458 <when value="ecotype"> | |
| 4459 <param name="operation" type="select" label="Operator"> | |
| 4460 <option value="equal">equal</option> | |
| 4461 <option value="different">different</option> | |
| 4462 </param> | |
| 4463 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4464 </when> | |
| 4465 <when value="exception"> | |
| 4466 <param name="operation" type="select" label="Operator"> | |
| 4467 <option value="equal">equal</option> | |
| 4468 <option value="different">different</option> | |
| 4469 </param> | |
| 4470 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4471 </when> | |
| 4472 <when value="accession"> | |
| 4473 <param name="operation" type="select" label="Operator"> | |
| 4474 <option value="equal">equal</option> | |
| 4475 <option value="different">different</option> | |
| 4476 </param> | |
| 4477 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4478 </when> | |
| 4479 <when value="isolation_source"> | |
| 4480 <param name="operation" type="select" label="Operator"> | |
| 4481 <option value="equal">equal</option> | |
| 4482 <option value="different">different</option> | |
| 4483 </param> | |
| 4484 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4485 </when> | |
| 4486 <when value="mating_type"> | |
| 4487 <param name="operation" type="select" label="Operator"> | |
| 4488 <option value="equal">equal</option> | |
| 4489 <option value="different">different</option> | |
| 4490 </param> | |
| 4491 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4492 </when> | |
| 4493 <when value="tissue_type"> | |
| 4494 <param name="operation" type="select" label="Operator"> | |
| 4495 <option value="equal">equal</option> | |
| 4496 <option value="different">different</option> | |
| 4497 </param> | |
| 4498 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4499 </when> | |
| 4500 <when value="sub_strain"> | |
| 4501 <param name="operation" type="select" label="Operator"> | |
| 4502 <option value="equal">equal</option> | |
| 4503 <option value="different">different</option> | |
| 4504 </param> | |
| 4505 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4506 </when> | |
| 4507 <when value="tissue_lib"> | |
| 4508 <param name="operation" type="select" label="Operator"> | |
| 4509 <option value="equal">equal</option> | |
| 4510 <option value="different">different</option> | |
| 4511 </param> | |
| 4512 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4513 </when> | |
| 4514 <when value="cultivar"> | |
| 4515 <param name="operation" type="select" label="Operator"> | |
| 4516 <option value="equal">equal</option> | |
| 4517 <option value="different">different</option> | |
| 4518 </param> | |
| 4519 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4520 </when> | |
| 4521 <when value="base_count"> | |
| 4522 <param name="operation" type="select" label="Operator"> | |
| 4523 <option value="equal">equal</option> | |
| 4524 <option value="different">different</option> | |
| 4525 <option value="lower">lower</option> | |
| 4526 <option value="equal or lower">equal or lower</option> | |
| 4527 <option value="higher">higher</option> | |
| 4528 <option value="equal or higher">equal or higher</option> | |
| 4529 </param> | |
| 4530 <param name="value" type="float" value="" label="Any integer"/> | |
| 4531 </when> | |
| 4532 <when value="topology"> | |
| 4533 <param name="operation" type="select" label="Operator"> | |
| 4534 <option value="equal">equal</option> | |
| 4535 <option value="different">different</option> | |
| 4536 </param> | |
| 4537 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4538 </when> | |
| 4539 <when value="sub_species"> | |
| 4540 <param name="operation" type="select" label="Operator"> | |
| 4541 <option value="equal">equal</option> | |
| 4542 <option value="different">different</option> | |
| 4543 </param> | |
| 4544 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4545 </when> | |
| 4546 <when value="first_public"> | |
| 4547 <param name="operation" type="select" label="Operator"> | |
| 4548 <option value="equal">equal</option> | |
| 4549 <option value="different">different</option> | |
| 4550 <option value="lower">lower</option> | |
| 4551 <option value="equal or lower">equal or lower</option> | |
| 4552 <option value="higher">higher</option> | |
| 4553 <option value="equal or higher">equal or higher</option> | |
| 4554 </param> | |
| 4555 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 4556 </when> | |
| 4557 <when value="strain"> | |
| 4558 <param name="operation" type="select" label="Operator"> | |
| 4559 <option value="equal">equal</option> | |
| 4560 <option value="different">different</option> | |
| 4561 </param> | |
| 4562 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4563 </when> | |
| 4564 <when value="country"> | |
| 4565 <param name="operation" type="select" label="Operator"> | |
| 4566 <option value="equal">equal</option> | |
| 4567 <option value="different">different</option> | |
| 4568 </param> | |
| 4569 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4570 </when> | |
| 4571 <when value="variety"> | |
| 4572 <param name="operation" type="select" label="Operator"> | |
| 4573 <option value="equal">equal</option> | |
| 4574 <option value="different">different</option> | |
| 4575 </param> | |
| 4576 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4577 </when> | |
| 4578 <when value="pseudo"> | |
| 4579 <param name="operation" type="select" label="Operator"> | |
| 4580 <option value="equal">equal</option> | |
| 4581 </param> | |
| 4582 <param name="value" type="select" label="Value"> | |
| 4583 <option value="yes">yes</option> | |
| 4584 <option value="true">true</option> | |
| 4585 <option value="no">no</option> | |
| 4586 <option value="false">false</option> | |
| 4587 </param> | |
| 4588 </when> | |
| 4589 <when value="environmental_sample"> | |
| 4590 <param name="operation" type="select" label="Operator"> | |
| 4591 <option value="equal">equal</option> | |
| 4592 </param> | |
| 4593 <param name="value" type="select" label="Value"> | |
| 4594 <option value="yes">yes</option> | |
| 4595 <option value="true">true</option> | |
| 4596 <option value="no">no</option> | |
| 4597 <option value="false">false</option> | |
| 4598 </param> | |
| 4599 </when> | |
| 4600 <when value="transl_table"> | |
| 4601 <param name="operation" type="select" label="Operator"> | |
| 4602 <option value="equal">equal</option> | |
| 4603 <option value="different">different</option> | |
| 4604 </param> | |
| 4605 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4606 </when> | |
| 4607 <when value="organelle"> | |
| 4608 <param name="operation" type="select" label="Operator"> | |
| 4609 <option value="equal">equal</option> | |
| 4610 <option value="different">different</option> | |
| 4611 </param> | |
| 4612 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4613 </when> | |
| 4614 <when value="ribosomal_slippage"> | |
| 4615 <param name="operation" type="select" label="Operator"> | |
| 4616 <option value="equal">equal</option> | |
| 4617 </param> | |
| 4618 <param name="value" type="select" label="Value"> | |
| 4619 <option value="yes">yes</option> | |
| 4620 <option value="true">true</option> | |
| 4621 <option value="no">no</option> | |
| 4622 <option value="false">false</option> | |
| 4623 </param> | |
| 4624 </when> | |
| 4625 <when value="serovar"> | |
| 4626 <param name="operation" type="select" label="Operator"> | |
| 4627 <option value="equal">equal</option> | |
| 4628 <option value="different">different</option> | |
| 4629 </param> | |
| 4630 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4631 </when> | |
| 4632 <when value="keywords"> | |
| 4633 <param name="operation" type="select" label="Operator"> | |
| 4634 <option value="equal">equal</option> | |
| 4635 <option value="different">different</option> | |
| 4636 </param> | |
| 4637 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4638 </when> | |
| 4639 <when value="dataclass"> | |
| 4640 <param name="operation" type="select" label="Operator"> | |
| 4641 <option value="equal">equal</option> | |
| 4642 <option value="different">different</option> | |
| 4643 </param> | |
| 4644 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4645 </when> | |
| 4646 <when value="gene"> | |
| 4647 <param name="operation" type="select" label="Operator"> | |
| 4648 <option value="equal">equal</option> | |
| 4649 <option value="different">different</option> | |
| 4650 </param> | |
| 4651 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4652 </when> | |
| 4653 <when value="codon_start"> | |
| 4654 <param name="operation" type="select" label="Operator"> | |
| 4655 <option value="equal">equal</option> | |
| 4656 <option value="different">different</option> | |
| 4657 </param> | |
| 4658 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4659 </when> | |
| 4660 <when value="culture_collection"> | |
| 4661 <param name="operation" type="select" label="Operator"> | |
| 4662 <option value="equal">equal</option> | |
| 4663 <option value="different">different</option> | |
| 4664 </param> | |
| 4665 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4666 </when> | |
| 4667 </conditional> | |
| 4668 </repeat> | |
| 4669 <conditional name="display_opt"> | |
| 4670 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 4671 <expand macro="display_options"/> | |
| 4672 </param> | |
| 4673 <when value="xml"> | |
| 4674 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 4675 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 4676 </when> | |
| 4677 <when value="text"> | |
| 4678 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 4679 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 4680 </when> | |
| 4681 <when value="fastq"/> | |
| 4682 <when value="html"> | |
| 4683 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 4684 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 4685 </when> | |
| 4686 <when value="report"> | |
| 4687 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 4688 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 4689 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 4690 <option value="accession">accession</option> | |
| 4691 <option value="base_count">base_count</option> | |
| 4692 <option value="bio_material">bio_material</option> | |
| 4693 <option value="cell_line">cell_line</option> | |
| 4694 <option value="cell_type">cell_type</option> | |
| 4695 <option value="collected_by">collected_by</option> | |
| 4696 <option value="collection_date">collection_date</option> | |
| 4697 <option value="country">country</option> | |
| 4698 <option value="cultivar">cultivar</option> | |
| 4699 <option value="culture_collection">culture_collection</option> | |
| 4700 <option value="dataclass">dataclass</option> | |
| 4701 <option value="description">description</option> | |
| 4702 <option value="dev_stage">dev_stage</option> | |
| 4703 <option value="ecotype">ecotype</option> | |
| 4704 <option value="environmental_sample">environmental_sample</option> | |
| 4705 <option value="first_public">first_public</option> | |
| 4706 <option value="germline">germline</option> | |
| 4707 <option value="host">host</option> | |
| 4708 <option value="identified_by">identified_by</option> | |
| 4709 <option value="isolate">isolate</option> | |
| 4710 <option value="isolation_source">isolation_source</option> | |
| 4711 <option value="keywords">keywords</option> | |
| 4712 <option value="lab_host">lab_host</option> | |
| 4713 <option value="last_updated">last_updated</option> | |
| 4714 <option value="location">location</option> | |
| 4715 <option value="mating_type">mating_type</option> | |
| 4716 <option value="mol_type">mol_type</option> | |
| 4717 <option value="organelle">organelle</option> | |
| 4718 <option value="serotype">serotype</option> | |
| 4719 <option value="serovar">serovar</option> | |
| 4720 <option value="sex">sex</option> | |
| 4721 <option value="submitted_sex">submitted_sex</option> | |
| 4722 <option value="specimen_voucher">specimen_voucher</option> | |
| 4723 <option value="strain">strain</option> | |
| 4724 <option value="sub_species">sub_species</option> | |
| 4725 <option value="sub_strain">sub_strain</option> | |
| 4726 <option value="tax_division">tax_division</option> | |
| 4727 <option value="tissue_lib">tissue_lib</option> | |
| 4728 <option value="tissue_type">tissue_type</option> | |
| 4729 <option value="variety">variety</option> | |
| 4730 <option value="allele">allele</option> | |
| 4731 <option value="artificial_location">artificial_location</option> | |
| 4732 <option value="codon_start">codon_start</option> | |
| 4733 <option value="ec_number">ec_number</option> | |
| 4734 <option value="exception">exception</option> | |
| 4735 <option value="experiment">experiment</option> | |
| 4736 <option value="function">function</option> | |
| 4737 <option value="topology">topology</option> | |
| 4738 <option value="gene">gene</option> | |
| 4739 <option value="gene_synonym">gene_synonym</option> | |
| 4740 <option value="inference">inference</option> | |
| 4741 <option value="locus_tag">locus_tag</option> | |
| 4742 <option value="map">map</option> | |
| 4743 <option value="note">note</option> | |
| 4744 <option value="old_locus_tag">old_locus_tag</option> | |
| 4745 <option value="operon">operon</option> | |
| 4746 <option value="partial">partial</option> | |
| 4747 <option value="product">product</option> | |
| 4748 <option value="protein_id">protein_id</option> | |
| 4749 <option value="pseudo">pseudo</option> | |
| 4750 <option value="pseudo_gene">pseudo_gene</option> | |
| 4751 <option value="ribosomal_slippage">ribosomal_slippage</option> | |
| 4752 <option value="standard_name">standard_name</option> | |
| 4753 <option value="trans_splicing">trans_splicing</option> | |
| 4754 <option value="transl_except">transl_except</option> | |
| 4755 <option value="transl_table">transl_table</option> | |
| 4756 <option value="tax_id">tax_id</option> | |
| 4757 <option value="scientific_name">scientific_name</option> | |
| 4758 <option value="parent_accession">parent_accession</option> | |
| 4759 <option value="altitude">altitude</option> | |
| 4760 <option value="haplotype">haplotype</option> | |
| 4761 <option value="sequence_md5">sequence_md5</option> | |
| 4762 </param> | |
| 4763 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 4764 <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option> | |
| 4765 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 4766 <option value="last_updated">date when last updated</option> | |
| 4767 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 4768 <option value="transl_except">a single codon translation that does not conform to genetic code</option> | |
| 4769 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 4770 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 4771 <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option> | |
| 4772 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 4773 <option value="pseudo_gene">indicates that this feature is a pseudogene</option> | |
| 4774 <option value="standard_name">accepted standard name for a feature</option> | |
| 4775 <option value="collected_by">name of the person who collected the specimen</option> | |
| 4776 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 4777 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 4778 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 4779 <option value="inference">a structured description of non-experimental evidence</option> | |
| 4780 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 4781 <option value="parent_accession">parent sequence accession number</option> | |
| 4782 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 4783 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 4784 <option value="sequence_md5"></option> | |
| 4785 <option value="tax_division">taxonomic division</option> | |
| 4786 <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 4787 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 4788 <option value="altitude">Altitude (m)</option> | |
| 4789 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 4790 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 4791 <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option> | |
| 4792 <option value="note">any comment or additional information</option> | |
| 4793 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 4794 <option value="location">geographic location of isolation of the sample</option> | |
| 4795 <option value="collection_date">date that the specimen was collected</option> | |
| 4796 <option value="allele">name of the allele for the given gene</option> | |
| 4797 <option value="protein_id">a stable protein identifier issued by INSDC</option> | |
| 4798 <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option> | |
| 4799 <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option> | |
| 4800 <option value="function">function attributed to a sequence</option> | |
| 4801 <option value="map">genomic map position of feature</option> | |
| 4802 <option value="product">name of the product associated with the feature</option> | |
| 4803 <option value="description">brief sequence description</option> | |
| 4804 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 4805 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 4806 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 4807 <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option> | |
| 4808 <option value="accession">accession number</option> | |
| 4809 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 4810 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 4811 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 4812 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 4813 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 4814 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 4815 <option value="base_count">number of base pairs</option> | |
| 4816 <option value="topology">sequence topology: circular or linear</option> | |
| 4817 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 4818 <option value="first_public">date when made public</option> | |
| 4819 <option value="strain">strain from which sample was obtained</option> | |
| 4820 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 4821 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 4822 <option value="pseudo">the feature is non-functional</option> | |
| 4823 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 4824 <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option> | |
| 4825 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 4826 <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option> | |
| 4827 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 4828 <option value="keywords">keywords associated with sequence</option> | |
| 4829 <option value="dataclass">sequence data class</option> | |
| 4830 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 4831 <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option> | |
| 4832 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 4833 </param> | |
| 4834 </when> | |
| 4835 <when value="fasta"/> | |
| 4836 </conditional> | |
| 4837 </when> | |
| 4838 <when value="sample"> | |
| 4839 <repeat name="queries" title="Add a query"> | |
| 4840 <param name="combination_operation" type="select" label="Combination operation"> | |
| 4841 <option value="AND">AND</option> | |
| 4842 <option value="OR">OR</option> | |
| 4843 <option value="NOT">NOT</option> | |
| 4844 </param> | |
| 4845 <conditional name="filter_field"> | |
| 4846 <param name="field" type="select" label="Field to query"> | |
| 4847 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 4848 <option value="environment_material">Environment (Material)</option> | |
| 4849 <option value="host_sex">physical sex of the host</option> | |
| 4850 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 4851 <option value="center_name">Submitting center</option> | |
| 4852 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 4853 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 4854 <option value="host_phenotype">phenotype of host</option> | |
| 4855 <option value="sampling_site">the site/station where this sample was collection</option> | |
| 4856 <option value="sequencing_method">sequencing method used</option> | |
| 4857 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 4858 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 4859 <option value="target_gene">targeted gene or locus name for marker gene studies</option> | |
| 4860 <option value="experimental_factor">variable aspects of the experimental design</option> | |
| 4861 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 4862 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 4863 <option value="temperature">Temperature (C)</option> | |
| 4864 <option value="sampling_platform">the large infrastructure from which this sample was collected</option> | |
| 4865 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 4866 <option value="collection_date">date that the specimen was collected</option> | |
| 4867 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 4868 <option value="altitude">Altitude (m)</option> | |
| 4869 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 4870 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 4871 <option value="investigation_type">the study type targeted by the sequencing</option> | |
| 4872 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 4873 <option value="protocol_label">the protocol used to produce the sample</option> | |
| 4874 <option value="location">geographic location of isolation of the sample</option> | |
| 4875 <option value="host_genotype">genotype of host</option> | |
| 4876 <option value="ph">pH</option> | |
| 4877 <option value="broker_name">broker name</option> | |
| 4878 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 4879 <option value="project_name">name of the project within which the sequencing was organized</option> | |
| 4880 <option value="elevation">Elevation (m)</option> | |
| 4881 <option value="description">brief sequence description</option> | |
| 4882 <option value="sample_alias">submitter's name for the sample</option> | |
| 4883 <option value="checklist">checklist name (or ID)</option> | |
| 4884 <option value="sampling_campaign">the activity within which this sample was collected</option> | |
| 4885 <option value="accession">accession number</option> | |
| 4886 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 4887 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 4888 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 4889 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 4890 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 4891 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 4892 <option value="environment_biome">Environment (Biome)</option> | |
| 4893 <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option> | |
| 4894 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 4895 <option value="first_public">date when made public</option> | |
| 4896 <option value="environment_feature">Environment (Feature)</option> | |
| 4897 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 4898 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 4899 <option value="collected_by">name of the person who collected the specimen</option> | |
| 4900 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 4901 <option value="salinity">Salinity (PSU)</option> | |
| 4902 <option value="host_status">condition of host (eg. diseased or healthy)</option> | |
| 4903 <option value="strain">strain from which sample was obtained</option> | |
| 4904 <option value="depth">Depth (m)</option> | |
| 4905 <option value="host_tax_id">NCBI taxon id of the host</option> | |
| 4906 <option value="host_body_site">name of body site from where the sample was obtained</option> | |
| 4907 <option value="host_growth_conditions">literature reference giving growth conditions of the host</option> | |
| 4908 <option value="sample_collection">the method or deviced employed for collecting the sample</option> | |
| 4909 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 4910 </param> | |
| 4911 <when value="secondary_sample_accession"> | |
| 4912 <param name="operation" type="select" label="Operator"> | |
| 4913 <option value="equal">equal</option> | |
| 4914 <option value="different">different</option> | |
| 4915 </param> | |
| 4916 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4917 </when> | |
| 4918 <when value="environment_material"> | |
| 4919 <param name="operation" type="select" label="Operator"> | |
| 4920 <option value="equal">equal</option> | |
| 4921 <option value="different">different</option> | |
| 4922 </param> | |
| 4923 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4924 </when> | |
| 4925 <when value="host_sex"> | |
| 4926 <param name="operation" type="select" label="Operator"> | |
| 4927 <option value="equal">equal</option> | |
| 4928 <option value="different">different</option> | |
| 4929 </param> | |
| 4930 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4931 </when> | |
| 4932 <when value="ecotype"> | |
| 4933 <param name="operation" type="select" label="Operator"> | |
| 4934 <option value="equal">equal</option> | |
| 4935 <option value="different">different</option> | |
| 4936 </param> | |
| 4937 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4938 </when> | |
| 4939 <when value="center_name"> | |
| 4940 <param name="operation" type="select" label="Operator"> | |
| 4941 <option value="equal">equal</option> | |
| 4942 <option value="different">different</option> | |
| 4943 </param> | |
| 4944 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4945 </when> | |
| 4946 <when value="serotype"> | |
| 4947 <param name="operation" type="select" label="Operator"> | |
| 4948 <option value="equal">equal</option> | |
| 4949 <option value="different">different</option> | |
| 4950 </param> | |
| 4951 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4952 </when> | |
| 4953 <when value="sex"> | |
| 4954 <param name="operation" type="select" label="Operator"> | |
| 4955 <option value="equal">equal</option> | |
| 4956 <option value="different">different</option> | |
| 4957 </param> | |
| 4958 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 4959 </when> | |
| 4960 <when value="host_phenotype"> | |
| 4961 <param name="operation" type="select" label="Operator"> | |
| 4962 <option value="equal">equal</option> | |
| 4963 <option value="different">different</option> | |
| 4964 </param> | |
| 4965 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4966 </when> | |
| 4967 <when value="sampling_site"> | |
| 4968 <param name="operation" type="select" label="Operator"> | |
| 4969 <option value="equal">equal</option> | |
| 4970 <option value="different">different</option> | |
| 4971 </param> | |
| 4972 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4973 </when> | |
| 4974 <when value="sequencing_method"> | |
| 4975 <param name="operation" type="select" label="Operator"> | |
| 4976 <option value="equal">equal</option> | |
| 4977 <option value="different">different</option> | |
| 4978 </param> | |
| 4979 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4980 </when> | |
| 4981 <when value="cell_line"> | |
| 4982 <param name="operation" type="select" label="Operator"> | |
| 4983 <option value="equal">equal</option> | |
| 4984 <option value="different">different</option> | |
| 4985 </param> | |
| 4986 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4987 </when> | |
| 4988 <when value="bio_material"> | |
| 4989 <param name="operation" type="select" label="Operator"> | |
| 4990 <option value="equal">equal</option> | |
| 4991 <option value="different">different</option> | |
| 4992 </param> | |
| 4993 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 4994 </when> | |
| 4995 <when value="target_gene"> | |
| 4996 <param name="operation" type="select" label="Operator"> | |
| 4997 <option value="equal">equal</option> | |
| 4998 <option value="different">different</option> | |
| 4999 </param> | |
| 5000 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5001 </when> | |
| 5002 <when value="experimental_factor"> | |
| 5003 <param name="operation" type="select" label="Operator"> | |
| 5004 <option value="equal">equal</option> | |
| 5005 <option value="different">different</option> | |
| 5006 </param> | |
| 5007 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5008 </when> | |
| 5009 <when value="identified_by"> | |
| 5010 <param name="operation" type="select" label="Operator"> | |
| 5011 <option value="equal">equal</option> | |
| 5012 <option value="different">different</option> | |
| 5013 </param> | |
| 5014 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5015 </when> | |
| 5016 <when value="cell_type"> | |
| 5017 <param name="operation" type="select" label="Operator"> | |
| 5018 <option value="equal">equal</option> | |
| 5019 <option value="different">different</option> | |
| 5020 </param> | |
| 5021 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5022 </when> | |
| 5023 <when value="temperature"> | |
| 5024 <param name="operation" type="select" label="Operator"> | |
| 5025 <option value="equal">equal</option> | |
| 5026 <option value="different">different</option> | |
| 5027 <option value="lower">lower</option> | |
| 5028 <option value="equal or lower">equal or lower</option> | |
| 5029 <option value="higher">higher</option> | |
| 5030 <option value="equal or higher">equal or higher</option> | |
| 5031 </param> | |
| 5032 <param name="value" type="float" value="" label="Any integer"/> | |
| 5033 </when> | |
| 5034 <when value="sampling_platform"> | |
| 5035 <param name="operation" type="select" label="Operator"> | |
| 5036 <option value="equal">equal</option> | |
| 5037 <option value="different">different</option> | |
| 5038 </param> | |
| 5039 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5040 </when> | |
| 5041 <when value="variety"> | |
| 5042 <param name="operation" type="select" label="Operator"> | |
| 5043 <option value="equal">equal</option> | |
| 5044 <option value="different">different</option> | |
| 5045 </param> | |
| 5046 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5047 </when> | |
| 5048 <when value="collection_date"> | |
| 5049 <param name="operation" type="select" label="Operator"> | |
| 5050 <option value="equal">equal</option> | |
| 5051 <option value="different">different</option> | |
| 5052 <option value="lower">lower</option> | |
| 5053 <option value="equal or lower">equal or lower</option> | |
| 5054 <option value="higher">higher</option> | |
| 5055 <option value="equal or higher">equal or higher</option> | |
| 5056 </param> | |
| 5057 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 5058 </when> | |
| 5059 <when value="specimen_voucher"> | |
| 5060 <param name="operation" type="select" label="Operator"> | |
| 5061 <option value="equal">equal</option> | |
| 5062 <option value="different">different</option> | |
| 5063 </param> | |
| 5064 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5065 </when> | |
| 5066 <when value="altitude"> | |
| 5067 <param name="operation" type="select" label="Operator"> | |
| 5068 <option value="equal">equal</option> | |
| 5069 <option value="different">different</option> | |
| 5070 <option value="lower">lower</option> | |
| 5071 <option value="equal or lower">equal or lower</option> | |
| 5072 <option value="higher">higher</option> | |
| 5073 <option value="equal or higher">equal or higher</option> | |
| 5074 </param> | |
| 5075 <param name="value" type="float" value="" label="Any integer"/> | |
| 5076 </when> | |
| 5077 <when value="dev_stage"> | |
| 5078 <param name="operation" type="select" label="Operator"> | |
| 5079 <option value="equal">equal</option> | |
| 5080 <option value="different">different</option> | |
| 5081 </param> | |
| 5082 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5083 </when> | |
| 5084 <when value="isolate"> | |
| 5085 <param name="operation" type="select" label="Operator"> | |
| 5086 <option value="equal">equal</option> | |
| 5087 <option value="different">different</option> | |
| 5088 </param> | |
| 5089 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5090 </when> | |
| 5091 <when value="investigation_type"> | |
| 5092 <param name="operation" type="select" label="Operator"> | |
| 5093 <option value="equal">equal</option> | |
| 5094 <option value="different">different</option> | |
| 5095 </param> | |
| 5096 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5097 </when> | |
| 5098 <when value="serovar"> | |
| 5099 <param name="operation" type="select" label="Operator"> | |
| 5100 <option value="equal">equal</option> | |
| 5101 <option value="different">different</option> | |
| 5102 </param> | |
| 5103 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5104 </when> | |
| 5105 <when value="protocol_label"> | |
| 5106 <param name="operation" type="select" label="Operator"> | |
| 5107 <option value="equal">equal</option> | |
| 5108 <option value="different">different</option> | |
| 5109 </param> | |
| 5110 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5111 </when> | |
| 5112 <when value="location"> | |
| 5113 <conditional name="op"> | |
| 5114 <param name="operation" type="select" label="Operation"> | |
| 5115 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 5116 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 5117 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 5118 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 5119 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 5120 <option value="geo_point">An exact lat/lon position</option> | |
| 5121 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 5122 </param> | |
| 5123 <when value="geo_box2"> | |
| 5124 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 5125 </when> | |
| 5126 <when value="geo_box1"> | |
| 5127 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 5128 </when> | |
| 5129 <when value="geo_circ"> | |
| 5130 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 5131 </when> | |
| 5132 <when value="geo_lat"> | |
| 5133 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 5134 </when> | |
| 5135 <when value="geo_south"> | |
| 5136 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 5137 </when> | |
| 5138 <when value="geo_point"> | |
| 5139 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 5140 </when> | |
| 5141 <when value="geo_north"> | |
| 5142 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 5143 </when> | |
| 5144 </conditional> | |
| 5145 </when> | |
| 5146 <when value="host_genotype"> | |
| 5147 <param name="operation" type="select" label="Operator"> | |
| 5148 <option value="equal">equal</option> | |
| 5149 <option value="different">different</option> | |
| 5150 </param> | |
| 5151 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5152 </when> | |
| 5153 <when value="ph"> | |
| 5154 <param name="operation" type="select" label="Operator"> | |
| 5155 <option value="equal">equal</option> | |
| 5156 <option value="different">different</option> | |
| 5157 <option value="lower">lower</option> | |
| 5158 <option value="equal or lower">equal or lower</option> | |
| 5159 <option value="higher">higher</option> | |
| 5160 <option value="equal or higher">equal or higher</option> | |
| 5161 </param> | |
| 5162 <param name="value" type="float" value="" label="Any integer"/> | |
| 5163 </when> | |
| 5164 <when value="broker_name"> | |
| 5165 <param name="operation" type="select" label="Operator"> | |
| 5166 <option value="equal">equal</option> | |
| 5167 <option value="different">different</option> | |
| 5168 </param> | |
| 5169 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5170 </when> | |
| 5171 <when value="germline"> | |
| 5172 <param name="operation" type="select" label="Operator"> | |
| 5173 <option value="equal">equal</option> | |
| 5174 </param> | |
| 5175 <param name="value" type="select" label="Value"> | |
| 5176 <option value="yes">yes</option> | |
| 5177 <option value="true">true</option> | |
| 5178 <option value="no">no</option> | |
| 5179 <option value="false">false</option> | |
| 5180 </param> | |
| 5181 </when> | |
| 5182 <when value="project_name"> | |
| 5183 <param name="operation" type="select" label="Operator"> | |
| 5184 <option value="equal">equal</option> | |
| 5185 <option value="different">different</option> | |
| 5186 </param> | |
| 5187 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5188 </when> | |
| 5189 <when value="elevation"> | |
| 5190 <param name="operation" type="select" label="Operator"> | |
| 5191 <option value="equal">equal</option> | |
| 5192 <option value="different">different</option> | |
| 5193 <option value="lower">lower</option> | |
| 5194 <option value="equal or lower">equal or lower</option> | |
| 5195 <option value="higher">higher</option> | |
| 5196 <option value="equal or higher">equal or higher</option> | |
| 5197 </param> | |
| 5198 <param name="value" type="float" value="" label="Any integer"/> | |
| 5199 </when> | |
| 5200 <when value="description"> | |
| 5201 <param name="operation" type="select" label="Operator"> | |
| 5202 <option value="equal">equal</option> | |
| 5203 <option value="different">different</option> | |
| 5204 </param> | |
| 5205 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5206 </when> | |
| 5207 <when value="sample_alias"> | |
| 5208 <param name="operation" type="select" label="Operator"> | |
| 5209 <option value="equal">equal</option> | |
| 5210 <option value="different">different</option> | |
| 5211 </param> | |
| 5212 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5213 </when> | |
| 5214 <when value="checklist"> | |
| 5215 <param name="operation" type="select" label="Operator"> | |
| 5216 <option value="equal">equal</option> | |
| 5217 <option value="different">different</option> | |
| 5218 </param> | |
| 5219 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5220 </when> | |
| 5221 <when value="sampling_campaign"> | |
| 5222 <param name="operation" type="select" label="Operator"> | |
| 5223 <option value="equal">equal</option> | |
| 5224 <option value="different">different</option> | |
| 5225 </param> | |
| 5226 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5227 </when> | |
| 5228 <when value="accession"> | |
| 5229 <param name="operation" type="select" label="Operator"> | |
| 5230 <option value="equal">equal</option> | |
| 5231 <option value="different">different</option> | |
| 5232 </param> | |
| 5233 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5234 </when> | |
| 5235 <when value="isolation_source"> | |
| 5236 <param name="operation" type="select" label="Operator"> | |
| 5237 <option value="equal">equal</option> | |
| 5238 <option value="different">different</option> | |
| 5239 </param> | |
| 5240 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5241 </when> | |
| 5242 <when value="mating_type"> | |
| 5243 <param name="operation" type="select" label="Operator"> | |
| 5244 <option value="equal">equal</option> | |
| 5245 <option value="different">different</option> | |
| 5246 </param> | |
| 5247 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5248 </when> | |
| 5249 <when value="tissue_type"> | |
| 5250 <param name="operation" type="select" label="Operator"> | |
| 5251 <option value="equal">equal</option> | |
| 5252 <option value="different">different</option> | |
| 5253 </param> | |
| 5254 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5255 </when> | |
| 5256 <when value="sub_strain"> | |
| 5257 <param name="operation" type="select" label="Operator"> | |
| 5258 <option value="equal">equal</option> | |
| 5259 <option value="different">different</option> | |
| 5260 </param> | |
| 5261 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5262 </when> | |
| 5263 <when value="tissue_lib"> | |
| 5264 <param name="operation" type="select" label="Operator"> | |
| 5265 <option value="equal">equal</option> | |
| 5266 <option value="different">different</option> | |
| 5267 </param> | |
| 5268 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5269 </when> | |
| 5270 <when value="cultivar"> | |
| 5271 <param name="operation" type="select" label="Operator"> | |
| 5272 <option value="equal">equal</option> | |
| 5273 <option value="different">different</option> | |
| 5274 </param> | |
| 5275 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5276 </when> | |
| 5277 <when value="environment_biome"> | |
| 5278 <param name="operation" type="select" label="Operator"> | |
| 5279 <option value="equal">equal</option> | |
| 5280 <option value="different">different</option> | |
| 5281 </param> | |
| 5282 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5283 </when> | |
| 5284 <when value="environmental_package"> | |
| 5285 <param name="operation" type="select" label="Operator"> | |
| 5286 <option value="equal">equal</option> | |
| 5287 <option value="different">different</option> | |
| 5288 </param> | |
| 5289 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5290 </when> | |
| 5291 <when value="sub_species"> | |
| 5292 <param name="operation" type="select" label="Operator"> | |
| 5293 <option value="equal">equal</option> | |
| 5294 <option value="different">different</option> | |
| 5295 </param> | |
| 5296 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5297 </when> | |
| 5298 <when value="first_public"> | |
| 5299 <param name="operation" type="select" label="Operator"> | |
| 5300 <option value="equal">equal</option> | |
| 5301 <option value="different">different</option> | |
| 5302 <option value="lower">lower</option> | |
| 5303 <option value="equal or lower">equal or lower</option> | |
| 5304 <option value="higher">higher</option> | |
| 5305 <option value="equal or higher">equal or higher</option> | |
| 5306 </param> | |
| 5307 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 5308 </when> | |
| 5309 <when value="environment_feature"> | |
| 5310 <param name="operation" type="select" label="Operator"> | |
| 5311 <option value="equal">equal</option> | |
| 5312 <option value="different">different</option> | |
| 5313 </param> | |
| 5314 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5315 </when> | |
| 5316 <when value="host"> | |
| 5317 <param name="operation" type="select" label="Operator"> | |
| 5318 <option value="equal">equal</option> | |
| 5319 <option value="different">different</option> | |
| 5320 </param> | |
| 5321 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5322 </when> | |
| 5323 <when value="country"> | |
| 5324 <param name="operation" type="select" label="Operator"> | |
| 5325 <option value="equal">equal</option> | |
| 5326 <option value="different">different</option> | |
| 5327 </param> | |
| 5328 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5329 </when> | |
| 5330 <when value="collected_by"> | |
| 5331 <param name="operation" type="select" label="Operator"> | |
| 5332 <option value="equal">equal</option> | |
| 5333 <option value="different">different</option> | |
| 5334 </param> | |
| 5335 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5336 </when> | |
| 5337 <when value="environmental_sample"> | |
| 5338 <param name="operation" type="select" label="Operator"> | |
| 5339 <option value="equal">equal</option> | |
| 5340 </param> | |
| 5341 <param name="value" type="select" label="Value"> | |
| 5342 <option value="yes">yes</option> | |
| 5343 <option value="true">true</option> | |
| 5344 <option value="no">no</option> | |
| 5345 <option value="false">false</option> | |
| 5346 </param> | |
| 5347 </when> | |
| 5348 <when value="salinity"> | |
| 5349 <param name="operation" type="select" label="Operator"> | |
| 5350 <option value="equal">equal</option> | |
| 5351 <option value="different">different</option> | |
| 5352 <option value="lower">lower</option> | |
| 5353 <option value="equal or lower">equal or lower</option> | |
| 5354 <option value="higher">higher</option> | |
| 5355 <option value="equal or higher">equal or higher</option> | |
| 5356 </param> | |
| 5357 <param name="value" type="float" value="" label="Any integer"/> | |
| 5358 </when> | |
| 5359 <when value="host_status"> | |
| 5360 <param name="operation" type="select" label="Operator"> | |
| 5361 <option value="equal">equal</option> | |
| 5362 <option value="different">different</option> | |
| 5363 </param> | |
| 5364 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5365 </when> | |
| 5366 <when value="strain"> | |
| 5367 <param name="operation" type="select" label="Operator"> | |
| 5368 <option value="equal">equal</option> | |
| 5369 <option value="different">different</option> | |
| 5370 </param> | |
| 5371 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5372 </when> | |
| 5373 <when value="depth"> | |
| 5374 <param name="operation" type="select" label="Operator"> | |
| 5375 <option value="equal">equal</option> | |
| 5376 <option value="different">different</option> | |
| 5377 <option value="lower">lower</option> | |
| 5378 <option value="equal or lower">equal or lower</option> | |
| 5379 <option value="higher">higher</option> | |
| 5380 <option value="equal or higher">equal or higher</option> | |
| 5381 </param> | |
| 5382 <param name="value" type="float" value="" label="Any integer"/> | |
| 5383 </when> | |
| 5384 <when value="host_tax_id"> | |
| 5385 <param name="operation" type="select" label="Operator"> | |
| 5386 <option value="equal">equal</option> | |
| 5387 <option value="different">different</option> | |
| 5388 <option value="lower">lower</option> | |
| 5389 <option value="equal or lower">equal or lower</option> | |
| 5390 <option value="higher">higher</option> | |
| 5391 <option value="equal or higher">equal or higher</option> | |
| 5392 </param> | |
| 5393 <param name="value" type="float" value="" label="Any integer"/> | |
| 5394 </when> | |
| 5395 <when value="host_body_site"> | |
| 5396 <param name="operation" type="select" label="Operator"> | |
| 5397 <option value="equal">equal</option> | |
| 5398 <option value="different">different</option> | |
| 5399 </param> | |
| 5400 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5401 </when> | |
| 5402 <when value="host_growth_conditions"> | |
| 5403 <param name="operation" type="select" label="Operator"> | |
| 5404 <option value="equal">equal</option> | |
| 5405 <option value="different">different</option> | |
| 5406 </param> | |
| 5407 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5408 </when> | |
| 5409 <when value="sample_collection"> | |
| 5410 <param name="operation" type="select" label="Operator"> | |
| 5411 <option value="equal">equal</option> | |
| 5412 <option value="different">different</option> | |
| 5413 </param> | |
| 5414 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5415 </when> | |
| 5416 <when value="culture_collection"> | |
| 5417 <param name="operation" type="select" label="Operator"> | |
| 5418 <option value="equal">equal</option> | |
| 5419 <option value="different">different</option> | |
| 5420 </param> | |
| 5421 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5422 </when> | |
| 5423 </conditional> | |
| 5424 </repeat> | |
| 5425 <conditional name="display_opt"> | |
| 5426 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 5427 <expand macro="display_options"/> | |
| 5428 </param> | |
| 5429 <when value="xml"> | |
| 5430 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 5431 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 5432 </when> | |
| 5433 <when value="text"> | |
| 5434 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 5435 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 5436 </when> | |
| 5437 <when value="fastq"/> | |
| 5438 <when value="html"> | |
| 5439 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 5440 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 5441 </when> | |
| 5442 <when value="report"> | |
| 5443 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 5444 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 5445 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 5446 <option value="accession">accession</option> | |
| 5447 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 5448 <option value="bio_material">bio_material</option> | |
| 5449 <option value="cell_line">cell_line</option> | |
| 5450 <option value="cell_type">cell_type</option> | |
| 5451 <option value="collected_by">collected_by</option> | |
| 5452 <option value="collection_date">collection_date</option> | |
| 5453 <option value="country">country</option> | |
| 5454 <option value="cultivar">cultivar</option> | |
| 5455 <option value="culture_collection">culture_collection</option> | |
| 5456 <option value="description">description</option> | |
| 5457 <option value="dev_stage">dev_stage</option> | |
| 5458 <option value="ecotype">ecotype</option> | |
| 5459 <option value="environmental_sample">environmental_sample</option> | |
| 5460 <option value="first_public">first_public</option> | |
| 5461 <option value="germline">germline</option> | |
| 5462 <option value="identified_by">identified_by</option> | |
| 5463 <option value="isolate">isolate</option> | |
| 5464 <option value="isolation_source">isolation_source</option> | |
| 5465 <option value="location">location</option> | |
| 5466 <option value="mating_type">mating_type</option> | |
| 5467 <option value="serotype">serotype</option> | |
| 5468 <option value="serovar">serovar</option> | |
| 5469 <option value="sex">sex</option> | |
| 5470 <option value="submitted_sex">submitted_sex</option> | |
| 5471 <option value="specimen_voucher">specimen_voucher</option> | |
| 5472 <option value="strain">strain</option> | |
| 5473 <option value="sub_species">sub_species</option> | |
| 5474 <option value="sub_strain">sub_strain</option> | |
| 5475 <option value="tissue_lib">tissue_lib</option> | |
| 5476 <option value="tissue_type">tissue_type</option> | |
| 5477 <option value="variety">variety</option> | |
| 5478 <option value="tax_id">tax_id</option> | |
| 5479 <option value="scientific_name">scientific_name</option> | |
| 5480 <option value="sample_alias">sample_alias</option> | |
| 5481 <option value="checklist">checklist</option> | |
| 5482 <option value="center_name">center_name</option> | |
| 5483 <option value="depth">depth</option> | |
| 5484 <option value="elevation">elevation</option> | |
| 5485 <option value="altitude">altitude</option> | |
| 5486 <option value="environment_biome">environment_biome</option> | |
| 5487 <option value="environment_feature">environment_feature</option> | |
| 5488 <option value="environment_material">environment_material</option> | |
| 5489 <option value="temperature">temperature</option> | |
| 5490 <option value="salinity">salinity</option> | |
| 5491 <option value="sampling_campaign">sampling_campaign</option> | |
| 5492 <option value="sampling_site">sampling_site</option> | |
| 5493 <option value="sampling_platform">sampling_platform</option> | |
| 5494 <option value="protocol_label">protocol_label</option> | |
| 5495 <option value="project_name">project_name</option> | |
| 5496 <option value="host">host</option> | |
| 5497 <option value="host_tax_id">host_tax_id</option> | |
| 5498 <option value="host_status">host_status</option> | |
| 5499 <option value="host_sex">host_sex</option> | |
| 5500 <option value="submitted_host_sex">submitted_host_sex</option> | |
| 5501 <option value="host_body_site">host_body_site</option> | |
| 5502 <option value="host_gravidity">host_gravidity</option> | |
| 5503 <option value="host_phenotype">host_phenotype</option> | |
| 5504 <option value="host_genotype">host_genotype</option> | |
| 5505 <option value="host_growth_conditions">host_growth_conditions</option> | |
| 5506 <option value="environmental_package">environmental_package</option> | |
| 5507 <option value="investigation_type">investigation_type</option> | |
| 5508 <option value="experimental_factor">experimental_factor</option> | |
| 5509 <option value="sample_collection">sample_collection</option> | |
| 5510 <option value="sequencing_method">sequencing_method</option> | |
| 5511 <option value="target_gene">target_gene</option> | |
| 5512 <option value="ph">ph</option> | |
| 5513 <option value="broker_name">broker_name</option> | |
| 5514 </param> | |
| 5515 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 5516 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 5517 <option value="environment_material">Environment (Material)</option> | |
| 5518 <option value="host_sex">physical sex of the host</option> | |
| 5519 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 5520 <option value="center_name">Submitting center</option> | |
| 5521 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 5522 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 5523 <option value="host_phenotype">phenotype of host</option> | |
| 5524 <option value="sampling_site">the site/station where this sample was collection</option> | |
| 5525 <option value="sequencing_method">sequencing method used</option> | |
| 5526 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 5527 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 5528 <option value="target_gene">targeted gene or locus name for marker gene studies</option> | |
| 5529 <option value="experimental_factor">variable aspects of the experimental design</option> | |
| 5530 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 5531 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 5532 <option value="temperature">Temperature (C)</option> | |
| 5533 <option value="sampling_platform">the large infrastructure from which this sample was collected</option> | |
| 5534 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 5535 <option value="collection_date">date that the specimen was collected</option> | |
| 5536 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 5537 <option value="altitude">Altitude (m)</option> | |
| 5538 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 5539 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 5540 <option value="investigation_type">the study type targeted by the sequencing</option> | |
| 5541 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 5542 <option value="protocol_label">the protocol used to produce the sample</option> | |
| 5543 <option value="location">geographic location of isolation of the sample</option> | |
| 5544 <option value="host_genotype">genotype of host</option> | |
| 5545 <option value="ph">pH</option> | |
| 5546 <option value="broker_name">broker name</option> | |
| 5547 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 5548 <option value="project_name">name of the project within which the sequencing was organized</option> | |
| 5549 <option value="elevation">Elevation (m)</option> | |
| 5550 <option value="description">brief sequence description</option> | |
| 5551 <option value="sample_alias">submitter's name for the sample</option> | |
| 5552 <option value="checklist">checklist name (or ID)</option> | |
| 5553 <option value="sampling_campaign">the activity within which this sample was collected</option> | |
| 5554 <option value="accession">accession number</option> | |
| 5555 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 5556 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 5557 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 5558 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 5559 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 5560 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 5561 <option value="environment_biome">Environment (Biome)</option> | |
| 5562 <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option> | |
| 5563 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 5564 <option value="first_public">date when made public</option> | |
| 5565 <option value="environment_feature">Environment (Feature)</option> | |
| 5566 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 5567 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 5568 <option value="collected_by">name of the person who collected the specimen</option> | |
| 5569 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 5570 <option value="salinity">Salinity (PSU)</option> | |
| 5571 <option value="host_status">condition of host (eg. diseased or healthy)</option> | |
| 5572 <option value="strain">strain from which sample was obtained</option> | |
| 5573 <option value="depth">Depth (m)</option> | |
| 5574 <option value="host_tax_id">NCBI taxon id of the host</option> | |
| 5575 <option value="host_body_site">name of body site from where the sample was obtained</option> | |
| 5576 <option value="host_growth_conditions">literature reference giving growth conditions of the host</option> | |
| 5577 <option value="sample_collection">the method or deviced employed for collecting the sample</option> | |
| 5578 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 5579 </param> | |
| 5580 </when> | |
| 5581 <when value="fasta"/> | |
| 5582 </conditional> | |
| 5583 </when> | |
| 5584 <when value="environmental"> | |
| 5585 <repeat name="queries" title="Add a query"> | |
| 5586 <param name="combination_operation" type="select" label="Combination operation"> | |
| 5587 <option value="AND">AND</option> | |
| 5588 <option value="OR">OR</option> | |
| 5589 <option value="NOT">NOT</option> | |
| 5590 </param> | |
| 5591 <conditional name="filter_field"> | |
| 5592 <param name="field" type="select" label="Field to query"> | |
| 5593 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 5594 <option value="environment_material">Environment (Material)</option> | |
| 5595 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 5596 <option value="event_label">label given to sampling event</option> | |
| 5597 <option value="center_name">Submitting center</option> | |
| 5598 <option value="accession">accession number</option> | |
| 5599 <option value="host_phenotype">phenotype of host</option> | |
| 5600 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 5601 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 5602 <option value="target_gene">targeted gene or locus name for marker gene studies</option> | |
| 5603 <option value="experimental_factor">variable aspects of the experimental design</option> | |
| 5604 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 5605 <option value="temperature">Temperature (C)</option> | |
| 5606 <option value="sampling_platform">the large infrastructure from which this sample was collected</option> | |
| 5607 <option value="collected_by">name of the person who collected the specimen</option> | |
| 5608 <option value="collection_date">date that the specimen was collected</option> | |
| 5609 <option value="altitude">Altitude (m)</option> | |
| 5610 <option value="host_sex">physical sex of the host</option> | |
| 5611 <option value="investigation_type">the study type targeted by the sequencing</option> | |
| 5612 <option value="location">geographic location of isolation of the sample</option> | |
| 5613 <option value="host_genotype">genotype of host</option> | |
| 5614 <option value="ph">pH</option> | |
| 5615 <option value="broker_name">broker name</option> | |
| 5616 <option value="project_name">name of the project within which the sequencing was organized</option> | |
| 5617 <option value="elevation">Elevation (m)</option> | |
| 5618 <option value="description">brief sequence description</option> | |
| 5619 <option value="sample_alias">submitter's name for the sample</option> | |
| 5620 <option value="checklist">checklist name (or ID)</option> | |
| 5621 <option value="sampling_campaign">the activity within which this sample was collected</option> | |
| 5622 <option value="protocol_label">the protocol used to produce the sample</option> | |
| 5623 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 5624 <option value="sampling_site">the site/station where this sample was collection</option> | |
| 5625 <option value="host_tax_id">NCBI taxon id of the host</option> | |
| 5626 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 5627 <option value="environment_biome">Environment (Biome)</option> | |
| 5628 <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option> | |
| 5629 <option value="marine_region">geographical origin of the sample as defined by the marine region</option> | |
| 5630 <option value="first_public">date when made public</option> | |
| 5631 <option value="environment_feature">Environment (Feature)</option> | |
| 5632 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 5633 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 5634 <option value="salinity">Salinity (PSU)</option> | |
| 5635 <option value="host_status">condition of host (eg. diseased or healthy)</option> | |
| 5636 <option value="strain">strain from which sample was obtained</option> | |
| 5637 <option value="depth">Depth (m)</option> | |
| 5638 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 5639 <option value="host_body_site">name of body site from where the sample was obtained</option> | |
| 5640 <option value="host_growth_conditions">literature reference giving growth conditions of the host</option> | |
| 5641 <option value="sample_collection">the method or deviced employed for collecting the sample</option> | |
| 5642 <option value="sequencing_method">sequencing method used</option> | |
| 5643 </param> | |
| 5644 <when value="secondary_sample_accession"> | |
| 5645 <param name="operation" type="select" label="Operator"> | |
| 5646 <option value="equal">equal</option> | |
| 5647 <option value="different">different</option> | |
| 5648 </param> | |
| 5649 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5650 </when> | |
| 5651 <when value="environment_material"> | |
| 5652 <param name="operation" type="select" label="Operator"> | |
| 5653 <option value="equal">equal</option> | |
| 5654 <option value="different">different</option> | |
| 5655 </param> | |
| 5656 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5657 </when> | |
| 5658 <when value="dev_stage"> | |
| 5659 <param name="operation" type="select" label="Operator"> | |
| 5660 <option value="equal">equal</option> | |
| 5661 <option value="different">different</option> | |
| 5662 </param> | |
| 5663 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5664 </when> | |
| 5665 <when value="event_label"> | |
| 5666 <param name="operation" type="select" label="Operator"> | |
| 5667 <option value="equal">equal</option> | |
| 5668 <option value="different">different</option> | |
| 5669 </param> | |
| 5670 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5671 </when> | |
| 5672 <when value="center_name"> | |
| 5673 <param name="operation" type="select" label="Operator"> | |
| 5674 <option value="equal">equal</option> | |
| 5675 <option value="different">different</option> | |
| 5676 </param> | |
| 5677 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5678 </when> | |
| 5679 <when value="accession"> | |
| 5680 <param name="operation" type="select" label="Operator"> | |
| 5681 <option value="equal">equal</option> | |
| 5682 <option value="different">different</option> | |
| 5683 </param> | |
| 5684 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5685 </when> | |
| 5686 <when value="host_phenotype"> | |
| 5687 <param name="operation" type="select" label="Operator"> | |
| 5688 <option value="equal">equal</option> | |
| 5689 <option value="different">different</option> | |
| 5690 </param> | |
| 5691 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5692 </when> | |
| 5693 <when value="cell_line"> | |
| 5694 <param name="operation" type="select" label="Operator"> | |
| 5695 <option value="equal">equal</option> | |
| 5696 <option value="different">different</option> | |
| 5697 </param> | |
| 5698 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5699 </when> | |
| 5700 <when value="bio_material"> | |
| 5701 <param name="operation" type="select" label="Operator"> | |
| 5702 <option value="equal">equal</option> | |
| 5703 <option value="different">different</option> | |
| 5704 </param> | |
| 5705 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5706 </when> | |
| 5707 <when value="target_gene"> | |
| 5708 <param name="operation" type="select" label="Operator"> | |
| 5709 <option value="equal">equal</option> | |
| 5710 <option value="different">different</option> | |
| 5711 </param> | |
| 5712 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5713 </when> | |
| 5714 <when value="experimental_factor"> | |
| 5715 <param name="operation" type="select" label="Operator"> | |
| 5716 <option value="equal">equal</option> | |
| 5717 <option value="different">different</option> | |
| 5718 </param> | |
| 5719 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5720 </when> | |
| 5721 <when value="identified_by"> | |
| 5722 <param name="operation" type="select" label="Operator"> | |
| 5723 <option value="equal">equal</option> | |
| 5724 <option value="different">different</option> | |
| 5725 </param> | |
| 5726 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5727 </when> | |
| 5728 <when value="temperature"> | |
| 5729 <param name="operation" type="select" label="Operator"> | |
| 5730 <option value="equal">equal</option> | |
| 5731 <option value="different">different</option> | |
| 5732 <option value="lower">lower</option> | |
| 5733 <option value="equal or lower">equal or lower</option> | |
| 5734 <option value="higher">higher</option> | |
| 5735 <option value="equal or higher">equal or higher</option> | |
| 5736 </param> | |
| 5737 <param name="value" type="float" value="" label="Any integer"/> | |
| 5738 </when> | |
| 5739 <when value="sampling_platform"> | |
| 5740 <param name="operation" type="select" label="Operator"> | |
| 5741 <option value="equal">equal</option> | |
| 5742 <option value="different">different</option> | |
| 5743 </param> | |
| 5744 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5745 </when> | |
| 5746 <when value="collected_by"> | |
| 5747 <param name="operation" type="select" label="Operator"> | |
| 5748 <option value="equal">equal</option> | |
| 5749 <option value="different">different</option> | |
| 5750 </param> | |
| 5751 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5752 </when> | |
| 5753 <when value="collection_date"> | |
| 5754 <param name="operation" type="select" label="Operator"> | |
| 5755 <option value="equal">equal</option> | |
| 5756 <option value="different">different</option> | |
| 5757 <option value="lower">lower</option> | |
| 5758 <option value="equal or lower">equal or lower</option> | |
| 5759 <option value="higher">higher</option> | |
| 5760 <option value="equal or higher">equal or higher</option> | |
| 5761 </param> | |
| 5762 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 5763 </when> | |
| 5764 <when value="altitude"> | |
| 5765 <param name="operation" type="select" label="Operator"> | |
| 5766 <option value="equal">equal</option> | |
| 5767 <option value="different">different</option> | |
| 5768 <option value="lower">lower</option> | |
| 5769 <option value="equal or lower">equal or lower</option> | |
| 5770 <option value="higher">higher</option> | |
| 5771 <option value="equal or higher">equal or higher</option> | |
| 5772 </param> | |
| 5773 <param name="value" type="float" value="" label="Any integer"/> | |
| 5774 </when> | |
| 5775 <when value="host_sex"> | |
| 5776 <param name="operation" type="select" label="Operator"> | |
| 5777 <option value="equal">equal</option> | |
| 5778 <option value="different">different</option> | |
| 5779 </param> | |
| 5780 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5781 </when> | |
| 5782 <when value="investigation_type"> | |
| 5783 <param name="operation" type="select" label="Operator"> | |
| 5784 <option value="equal">equal</option> | |
| 5785 <option value="different">different</option> | |
| 5786 </param> | |
| 5787 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5788 </when> | |
| 5789 <when value="location"> | |
| 5790 <conditional name="op"> | |
| 5791 <param name="operation" type="select" label="Operation"> | |
| 5792 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 5793 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 5794 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 5795 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 5796 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 5797 <option value="geo_point">An exact lat/lon position</option> | |
| 5798 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 5799 </param> | |
| 5800 <when value="geo_box2"> | |
| 5801 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 5802 </when> | |
| 5803 <when value="geo_box1"> | |
| 5804 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 5805 </when> | |
| 5806 <when value="geo_circ"> | |
| 5807 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 5808 </when> | |
| 5809 <when value="geo_lat"> | |
| 5810 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 5811 </when> | |
| 5812 <when value="geo_south"> | |
| 5813 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 5814 </when> | |
| 5815 <when value="geo_point"> | |
| 5816 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 5817 </when> | |
| 5818 <when value="geo_north"> | |
| 5819 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 5820 </when> | |
| 5821 </conditional> | |
| 5822 </when> | |
| 5823 <when value="host_genotype"> | |
| 5824 <param name="operation" type="select" label="Operator"> | |
| 5825 <option value="equal">equal</option> | |
| 5826 <option value="different">different</option> | |
| 5827 </param> | |
| 5828 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5829 </when> | |
| 5830 <when value="ph"> | |
| 5831 <param name="operation" type="select" label="Operator"> | |
| 5832 <option value="equal">equal</option> | |
| 5833 <option value="different">different</option> | |
| 5834 <option value="lower">lower</option> | |
| 5835 <option value="equal or lower">equal or lower</option> | |
| 5836 <option value="higher">higher</option> | |
| 5837 <option value="equal or higher">equal or higher</option> | |
| 5838 </param> | |
| 5839 <param name="value" type="float" value="" label="Any integer"/> | |
| 5840 </when> | |
| 5841 <when value="broker_name"> | |
| 5842 <param name="operation" type="select" label="Operator"> | |
| 5843 <option value="equal">equal</option> | |
| 5844 <option value="different">different</option> | |
| 5845 </param> | |
| 5846 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5847 </when> | |
| 5848 <when value="project_name"> | |
| 5849 <param name="operation" type="select" label="Operator"> | |
| 5850 <option value="equal">equal</option> | |
| 5851 <option value="different">different</option> | |
| 5852 </param> | |
| 5853 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5854 </when> | |
| 5855 <when value="elevation"> | |
| 5856 <param name="operation" type="select" label="Operator"> | |
| 5857 <option value="equal">equal</option> | |
| 5858 <option value="different">different</option> | |
| 5859 <option value="lower">lower</option> | |
| 5860 <option value="equal or lower">equal or lower</option> | |
| 5861 <option value="higher">higher</option> | |
| 5862 <option value="equal or higher">equal or higher</option> | |
| 5863 </param> | |
| 5864 <param name="value" type="float" value="" label="Any integer"/> | |
| 5865 </when> | |
| 5866 <when value="description"> | |
| 5867 <param name="operation" type="select" label="Operator"> | |
| 5868 <option value="equal">equal</option> | |
| 5869 <option value="different">different</option> | |
| 5870 </param> | |
| 5871 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5872 </when> | |
| 5873 <when value="sample_alias"> | |
| 5874 <param name="operation" type="select" label="Operator"> | |
| 5875 <option value="equal">equal</option> | |
| 5876 <option value="different">different</option> | |
| 5877 </param> | |
| 5878 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5879 </when> | |
| 5880 <when value="checklist"> | |
| 5881 <param name="operation" type="select" label="Operator"> | |
| 5882 <option value="equal">equal</option> | |
| 5883 <option value="different">different</option> | |
| 5884 </param> | |
| 5885 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5886 </when> | |
| 5887 <when value="sampling_campaign"> | |
| 5888 <param name="operation" type="select" label="Operator"> | |
| 5889 <option value="equal">equal</option> | |
| 5890 <option value="different">different</option> | |
| 5891 </param> | |
| 5892 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5893 </when> | |
| 5894 <when value="protocol_label"> | |
| 5895 <param name="operation" type="select" label="Operator"> | |
| 5896 <option value="equal">equal</option> | |
| 5897 <option value="different">different</option> | |
| 5898 </param> | |
| 5899 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5900 </when> | |
| 5901 <when value="isolation_source"> | |
| 5902 <param name="operation" type="select" label="Operator"> | |
| 5903 <option value="equal">equal</option> | |
| 5904 <option value="different">different</option> | |
| 5905 </param> | |
| 5906 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5907 </when> | |
| 5908 <when value="sampling_site"> | |
| 5909 <param name="operation" type="select" label="Operator"> | |
| 5910 <option value="equal">equal</option> | |
| 5911 <option value="different">different</option> | |
| 5912 </param> | |
| 5913 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5914 </when> | |
| 5915 <when value="host_tax_id"> | |
| 5916 <param name="operation" type="select" label="Operator"> | |
| 5917 <option value="equal">equal</option> | |
| 5918 <option value="different">different</option> | |
| 5919 <option value="lower">lower</option> | |
| 5920 <option value="equal or lower">equal or lower</option> | |
| 5921 <option value="higher">higher</option> | |
| 5922 <option value="equal or higher">equal or higher</option> | |
| 5923 </param> | |
| 5924 <param name="value" type="float" value="" label="Any integer"/> | |
| 5925 </when> | |
| 5926 <when value="cultivar"> | |
| 5927 <param name="operation" type="select" label="Operator"> | |
| 5928 <option value="equal">equal</option> | |
| 5929 <option value="different">different</option> | |
| 5930 </param> | |
| 5931 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5932 </when> | |
| 5933 <when value="environment_biome"> | |
| 5934 <param name="operation" type="select" label="Operator"> | |
| 5935 <option value="equal">equal</option> | |
| 5936 <option value="different">different</option> | |
| 5937 </param> | |
| 5938 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5939 </when> | |
| 5940 <when value="environmental_package"> | |
| 5941 <param name="operation" type="select" label="Operator"> | |
| 5942 <option value="equal">equal</option> | |
| 5943 <option value="different">different</option> | |
| 5944 </param> | |
| 5945 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 5946 </when> | |
| 5947 <when value="marine_region"> | |
| 5948 <param name="operation" type="select" label="Operator"> | |
| 5949 <option value="equal">equal</option> | |
| 5950 <option value="different">different</option> | |
| 5951 </param> | |
| 5952 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5953 </when> | |
| 5954 <when value="first_public"> | |
| 5955 <param name="operation" type="select" label="Operator"> | |
| 5956 <option value="equal">equal</option> | |
| 5957 <option value="different">different</option> | |
| 5958 <option value="lower">lower</option> | |
| 5959 <option value="equal or lower">equal or lower</option> | |
| 5960 <option value="higher">higher</option> | |
| 5961 <option value="equal or higher">equal or higher</option> | |
| 5962 </param> | |
| 5963 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 5964 </when> | |
| 5965 <when value="environment_feature"> | |
| 5966 <param name="operation" type="select" label="Operator"> | |
| 5967 <option value="equal">equal</option> | |
| 5968 <option value="different">different</option> | |
| 5969 </param> | |
| 5970 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5971 </when> | |
| 5972 <when value="country"> | |
| 5973 <param name="operation" type="select" label="Operator"> | |
| 5974 <option value="equal">equal</option> | |
| 5975 <option value="different">different</option> | |
| 5976 </param> | |
| 5977 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5978 </when> | |
| 5979 <when value="host"> | |
| 5980 <param name="operation" type="select" label="Operator"> | |
| 5981 <option value="equal">equal</option> | |
| 5982 <option value="different">different</option> | |
| 5983 </param> | |
| 5984 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 5985 </when> | |
| 5986 <when value="salinity"> | |
| 5987 <param name="operation" type="select" label="Operator"> | |
| 5988 <option value="equal">equal</option> | |
| 5989 <option value="different">different</option> | |
| 5990 <option value="lower">lower</option> | |
| 5991 <option value="equal or lower">equal or lower</option> | |
| 5992 <option value="higher">higher</option> | |
| 5993 <option value="equal or higher">equal or higher</option> | |
| 5994 </param> | |
| 5995 <param name="value" type="float" value="" label="Any integer"/> | |
| 5996 </when> | |
| 5997 <when value="host_status"> | |
| 5998 <param name="operation" type="select" label="Operator"> | |
| 5999 <option value="equal">equal</option> | |
| 6000 <option value="different">different</option> | |
| 6001 </param> | |
| 6002 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6003 </when> | |
| 6004 <when value="strain"> | |
| 6005 <param name="operation" type="select" label="Operator"> | |
| 6006 <option value="equal">equal</option> | |
| 6007 <option value="different">different</option> | |
| 6008 </param> | |
| 6009 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6010 </when> | |
| 6011 <when value="depth"> | |
| 6012 <param name="operation" type="select" label="Operator"> | |
| 6013 <option value="equal">equal</option> | |
| 6014 <option value="different">different</option> | |
| 6015 <option value="lower">lower</option> | |
| 6016 <option value="equal or lower">equal or lower</option> | |
| 6017 <option value="higher">higher</option> | |
| 6018 <option value="equal or higher">equal or higher</option> | |
| 6019 </param> | |
| 6020 <param name="value" type="float" value="" label="Any integer"/> | |
| 6021 </when> | |
| 6022 <when value="tissue_type"> | |
| 6023 <param name="operation" type="select" label="Operator"> | |
| 6024 <option value="equal">equal</option> | |
| 6025 <option value="different">different</option> | |
| 6026 </param> | |
| 6027 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6028 </when> | |
| 6029 <when value="host_body_site"> | |
| 6030 <param name="operation" type="select" label="Operator"> | |
| 6031 <option value="equal">equal</option> | |
| 6032 <option value="different">different</option> | |
| 6033 </param> | |
| 6034 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6035 </when> | |
| 6036 <when value="host_growth_conditions"> | |
| 6037 <param name="operation" type="select" label="Operator"> | |
| 6038 <option value="equal">equal</option> | |
| 6039 <option value="different">different</option> | |
| 6040 </param> | |
| 6041 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6042 </when> | |
| 6043 <when value="sample_collection"> | |
| 6044 <param name="operation" type="select" label="Operator"> | |
| 6045 <option value="equal">equal</option> | |
| 6046 <option value="different">different</option> | |
| 6047 </param> | |
| 6048 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6049 </when> | |
| 6050 <when value="sequencing_method"> | |
| 6051 <param name="operation" type="select" label="Operator"> | |
| 6052 <option value="equal">equal</option> | |
| 6053 <option value="different">different</option> | |
| 6054 </param> | |
| 6055 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6056 </when> | |
| 6057 </conditional> | |
| 6058 </repeat> | |
| 6059 <conditional name="display_opt"> | |
| 6060 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 6061 <expand macro="display_options"/> | |
| 6062 </param> | |
| 6063 <when value="xml"> | |
| 6064 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6065 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6066 </when> | |
| 6067 <when value="text"> | |
| 6068 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6069 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6070 </when> | |
| 6071 <when value="fastq"/> | |
| 6072 <when value="html"> | |
| 6073 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6074 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6075 </when> | |
| 6076 <when value="report"> | |
| 6077 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6078 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6079 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 6080 <option value="accession">accession</option> | |
| 6081 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 6082 <option value="bio_material">bio_material</option> | |
| 6083 <option value="cell_line">cell_line</option> | |
| 6084 <option value="collected_by">collected_by</option> | |
| 6085 <option value="collection_date">collection_date</option> | |
| 6086 <option value="country">country</option> | |
| 6087 <option value="marine_region">marine_region</option> | |
| 6088 <option value="cultivar">cultivar</option> | |
| 6089 <option value="description">description</option> | |
| 6090 <option value="dev_stage">dev_stage</option> | |
| 6091 <option value="first_public">first_public</option> | |
| 6092 <option value="identified_by">identified_by</option> | |
| 6093 <option value="isolation_source">isolation_source</option> | |
| 6094 <option value="location">location</option> | |
| 6095 <option value="strain">strain</option> | |
| 6096 <option value="tissue_type">tissue_type</option> | |
| 6097 <option value="tax_id">tax_id</option> | |
| 6098 <option value="scientific_name">scientific_name</option> | |
| 6099 <option value="sample_alias">sample_alias</option> | |
| 6100 <option value="checklist">checklist</option> | |
| 6101 <option value="center_name">center_name</option> | |
| 6102 <option value="depth">depth</option> | |
| 6103 <option value="elevation">elevation</option> | |
| 6104 <option value="altitude">altitude</option> | |
| 6105 <option value="environment_biome">environment_biome</option> | |
| 6106 <option value="environment_feature">environment_feature</option> | |
| 6107 <option value="environment_material">environment_material</option> | |
| 6108 <option value="temperature">temperature</option> | |
| 6109 <option value="salinity">salinity</option> | |
| 6110 <option value="sampling_campaign">sampling_campaign</option> | |
| 6111 <option value="sampling_site">sampling_site</option> | |
| 6112 <option value="sampling_platform">sampling_platform</option> | |
| 6113 <option value="protocol_label">protocol_label</option> | |
| 6114 <option value="project_name">project_name</option> | |
| 6115 <option value="host">host</option> | |
| 6116 <option value="host_tax_id">host_tax_id</option> | |
| 6117 <option value="host_status">host_status</option> | |
| 6118 <option value="host_sex">host_sex</option> | |
| 6119 <option value="submitted_host_sex">submitted_host_sex</option> | |
| 6120 <option value="host_body_site">host_body_site</option> | |
| 6121 <option value="host_gravidity">host_gravidity</option> | |
| 6122 <option value="host_phenotype">host_phenotype</option> | |
| 6123 <option value="host_genotype">host_genotype</option> | |
| 6124 <option value="host_growth_conditions">host_growth_conditions</option> | |
| 6125 <option value="environmental_package">environmental_package</option> | |
| 6126 <option value="investigation_type">investigation_type</option> | |
| 6127 <option value="experimental_factor">experimental_factor</option> | |
| 6128 <option value="sample_collection">sample_collection</option> | |
| 6129 <option value="sequencing_method">sequencing_method</option> | |
| 6130 <option value="target_gene">target_gene</option> | |
| 6131 <option value="ph">ph</option> | |
| 6132 <option value="broker_name">broker_name</option> | |
| 6133 <option value="event_label">event_label</option> | |
| 6134 </param> | |
| 6135 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 6136 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 6137 <option value="environment_material">Environment (Material)</option> | |
| 6138 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 6139 <option value="event_label">label given to sampling event</option> | |
| 6140 <option value="center_name">Submitting center</option> | |
| 6141 <option value="accession">accession number</option> | |
| 6142 <option value="host_phenotype">phenotype of host</option> | |
| 6143 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 6144 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 6145 <option value="target_gene">targeted gene or locus name for marker gene studies</option> | |
| 6146 <option value="experimental_factor">variable aspects of the experimental design</option> | |
| 6147 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 6148 <option value="temperature">Temperature (C)</option> | |
| 6149 <option value="sampling_platform">the large infrastructure from which this sample was collected</option> | |
| 6150 <option value="collected_by">name of the person who collected the specimen</option> | |
| 6151 <option value="collection_date">date that the specimen was collected</option> | |
| 6152 <option value="altitude">Altitude (m)</option> | |
| 6153 <option value="host_sex">physical sex of the host</option> | |
| 6154 <option value="investigation_type">the study type targeted by the sequencing</option> | |
| 6155 <option value="location">geographic location of isolation of the sample</option> | |
| 6156 <option value="host_genotype">genotype of host</option> | |
| 6157 <option value="ph">pH</option> | |
| 6158 <option value="broker_name">broker name</option> | |
| 6159 <option value="project_name">name of the project within which the sequencing was organized</option> | |
| 6160 <option value="elevation">Elevation (m)</option> | |
| 6161 <option value="description">brief sequence description</option> | |
| 6162 <option value="sample_alias">submitter's name for the sample</option> | |
| 6163 <option value="checklist">checklist name (or ID)</option> | |
| 6164 <option value="sampling_campaign">the activity within which this sample was collected</option> | |
| 6165 <option value="protocol_label">the protocol used to produce the sample</option> | |
| 6166 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 6167 <option value="sampling_site">the site/station where this sample was collection</option> | |
| 6168 <option value="host_tax_id">NCBI taxon id of the host</option> | |
| 6169 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 6170 <option value="environment_biome">Environment (Biome)</option> | |
| 6171 <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option> | |
| 6172 <option value="marine_region">geographical origin of the sample as defined by the marine region</option> | |
| 6173 <option value="first_public">date when made public</option> | |
| 6174 <option value="environment_feature">Environment (Feature)</option> | |
| 6175 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 6176 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 6177 <option value="salinity">Salinity (PSU)</option> | |
| 6178 <option value="host_status">condition of host (eg. diseased or healthy)</option> | |
| 6179 <option value="strain">strain from which sample was obtained</option> | |
| 6180 <option value="depth">Depth (m)</option> | |
| 6181 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 6182 <option value="host_body_site">name of body site from where the sample was obtained</option> | |
| 6183 <option value="host_growth_conditions">literature reference giving growth conditions of the host</option> | |
| 6184 <option value="sample_collection">the method or deviced employed for collecting the sample</option> | |
| 6185 <option value="sequencing_method">sequencing method used</option> | |
| 6186 </param> | |
| 6187 </when> | |
| 6188 <when value="fasta"/> | |
| 6189 </conditional> | |
| 6190 </when> | |
| 6191 <when value="read_run"> | |
| 6192 <repeat name="queries" title="Add a query"> | |
| 6193 <param name="combination_operation" type="select" label="Combination operation"> | |
| 6194 <option value="AND">AND</option> | |
| 6195 <option value="OR">OR</option> | |
| 6196 <option value="NOT">NOT</option> | |
| 6197 </param> | |
| 6198 <conditional name="filter_field"> | |
| 6199 <param name="field" type="select" label="Field to query"> | |
| 6200 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 6201 <option value="library_name">sequencing library name</option> | |
| 6202 <option value="read_count">number of reads</option> | |
| 6203 <option value="last_updated">date when last updated</option> | |
| 6204 <option value="center_name">Submitting center</option> | |
| 6205 <option value="submission_accession">submission accession number</option> | |
| 6206 <option value="nominal_length">average fragmentation size of paired reads</option> | |
| 6207 <option value="base_count">number of base pairs</option> | |
| 6208 <option value="run_accession">run accession number</option> | |
| 6209 <option value="library_selection">method used to select or enrich the material being sequenced</option> | |
| 6210 <option value="library_strategy">sequencing technique intended for the library</option> | |
| 6211 <option value="experiment_accession">experiment accession number</option> | |
| 6212 <option value="study_alias">submitter's name for the study</option> | |
| 6213 <option value="submitted_format"></option> | |
| 6214 <option value="broker_name">broker name</option> | |
| 6215 <option value="sample_alias">submitter's name for the sample</option> | |
| 6216 <option value="run_alias">submitter's name for the run</option> | |
| 6217 <option value="secondary_study_accession">project accession number</option> | |
| 6218 <option value="study_accession">study accession number</option> | |
| 6219 <option value="library_layout">sequencing library layout</option> | |
| 6220 <option value="library_source">source material being sequenced</option> | |
| 6221 <option value="experiment_title">brief experiment title</option> | |
| 6222 <option value="first_public">date when made public</option> | |
| 6223 <option value="instrument_platform">instrument platform used in sequencing experiment</option> | |
| 6224 <option value="instrument_model">instrument model used in sequencing experiment</option> | |
| 6225 <option value="sample_accession">sample accession number</option> | |
| 6226 <option value="experiment_alias">submitter's name for the experiment</option> | |
| 6227 <option value="study_title">brief sequencing study description</option> | |
| 6228 </param> | |
| 6229 <when value="secondary_sample_accession"> | |
| 6230 <param name="operation" type="select" label="Operator"> | |
| 6231 <option value="equal">equal</option> | |
| 6232 <option value="different">different</option> | |
| 6233 </param> | |
| 6234 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6235 </when> | |
| 6236 <when value="library_name"> | |
| 6237 <param name="operation" type="select" label="Operator"> | |
| 6238 <option value="equal">equal</option> | |
| 6239 <option value="different">different</option> | |
| 6240 </param> | |
| 6241 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6242 </when> | |
| 6243 <when value="read_count"> | |
| 6244 <param name="operation" type="select" label="Operator"> | |
| 6245 <option value="equal">equal</option> | |
| 6246 <option value="different">different</option> | |
| 6247 <option value="lower">lower</option> | |
| 6248 <option value="equal or lower">equal or lower</option> | |
| 6249 <option value="higher">higher</option> | |
| 6250 <option value="equal or higher">equal or higher</option> | |
| 6251 </param> | |
| 6252 <param name="value" type="float" value="" label="Any integer"/> | |
| 6253 </when> | |
| 6254 <when value="last_updated"> | |
| 6255 <param name="operation" type="select" label="Operator"> | |
| 6256 <option value="equal">equal</option> | |
| 6257 <option value="different">different</option> | |
| 6258 <option value="lower">lower</option> | |
| 6259 <option value="equal or lower">equal or lower</option> | |
| 6260 <option value="higher">higher</option> | |
| 6261 <option value="equal or higher">equal or higher</option> | |
| 6262 </param> | |
| 6263 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 6264 </when> | |
| 6265 <when value="center_name"> | |
| 6266 <param name="operation" type="select" label="Operator"> | |
| 6267 <option value="equal">equal</option> | |
| 6268 <option value="different">different</option> | |
| 6269 </param> | |
| 6270 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6271 </when> | |
| 6272 <when value="submission_accession"> | |
| 6273 <param name="operation" type="select" label="Operator"> | |
| 6274 <option value="equal">equal</option> | |
| 6275 <option value="different">different</option> | |
| 6276 </param> | |
| 6277 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6278 </when> | |
| 6279 <when value="nominal_length"> | |
| 6280 <param name="operation" type="select" label="Operator"> | |
| 6281 <option value="equal">equal</option> | |
| 6282 <option value="different">different</option> | |
| 6283 <option value="lower">lower</option> | |
| 6284 <option value="equal or lower">equal or lower</option> | |
| 6285 <option value="higher">higher</option> | |
| 6286 <option value="equal or higher">equal or higher</option> | |
| 6287 </param> | |
| 6288 <param name="value" type="float" value="" label="Any integer"/> | |
| 6289 </when> | |
| 6290 <when value="base_count"> | |
| 6291 <param name="operation" type="select" label="Operator"> | |
| 6292 <option value="equal">equal</option> | |
| 6293 <option value="different">different</option> | |
| 6294 <option value="lower">lower</option> | |
| 6295 <option value="equal or lower">equal or lower</option> | |
| 6296 <option value="higher">higher</option> | |
| 6297 <option value="equal or higher">equal or higher</option> | |
| 6298 </param> | |
| 6299 <param name="value" type="float" value="" label="Any integer"/> | |
| 6300 </when> | |
| 6301 <when value="run_accession"> | |
| 6302 <param name="operation" type="select" label="Operator"> | |
| 6303 <option value="equal">equal</option> | |
| 6304 <option value="different">different</option> | |
| 6305 </param> | |
| 6306 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6307 </when> | |
| 6308 <when value="library_selection"> | |
| 6309 <param name="operation" type="select" label="Operator"> | |
| 6310 <option value="equal">equal</option> | |
| 6311 <option value="different">different</option> | |
| 6312 </param> | |
| 6313 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6314 </when> | |
| 6315 <when value="library_strategy"> | |
| 6316 <param name="operation" type="select" label="Operator"> | |
| 6317 <option value="equal">equal</option> | |
| 6318 <option value="different">different</option> | |
| 6319 </param> | |
| 6320 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6321 </when> | |
| 6322 <when value="experiment_accession"> | |
| 6323 <param name="operation" type="select" label="Operator"> | |
| 6324 <option value="equal">equal</option> | |
| 6325 <option value="different">different</option> | |
| 6326 </param> | |
| 6327 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6328 </when> | |
| 6329 <when value="study_alias"> | |
| 6330 <param name="operation" type="select" label="Operator"> | |
| 6331 <option value="equal">equal</option> | |
| 6332 <option value="different">different</option> | |
| 6333 </param> | |
| 6334 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6335 </when> | |
| 6336 <when value="submitted_format"> | |
| 6337 <param name="operation" type="select" label="Operator"> | |
| 6338 <option value="equal">equal</option> | |
| 6339 <option value="different">different</option> | |
| 6340 </param> | |
| 6341 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6342 </when> | |
| 6343 <when value="broker_name"> | |
| 6344 <param name="operation" type="select" label="Operator"> | |
| 6345 <option value="equal">equal</option> | |
| 6346 <option value="different">different</option> | |
| 6347 </param> | |
| 6348 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6349 </when> | |
| 6350 <when value="sample_alias"> | |
| 6351 <param name="operation" type="select" label="Operator"> | |
| 6352 <option value="equal">equal</option> | |
| 6353 <option value="different">different</option> | |
| 6354 </param> | |
| 6355 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6356 </when> | |
| 6357 <when value="run_alias"> | |
| 6358 <param name="operation" type="select" label="Operator"> | |
| 6359 <option value="equal">equal</option> | |
| 6360 <option value="different">different</option> | |
| 6361 </param> | |
| 6362 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6363 </when> | |
| 6364 <when value="secondary_study_accession"> | |
| 6365 <param name="operation" type="select" label="Operator"> | |
| 6366 <option value="equal">equal</option> | |
| 6367 <option value="different">different</option> | |
| 6368 </param> | |
| 6369 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6370 </when> | |
| 6371 <when value="study_accession"> | |
| 6372 <param name="operation" type="select" label="Operator"> | |
| 6373 <option value="equal">equal</option> | |
| 6374 <option value="different">different</option> | |
| 6375 </param> | |
| 6376 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6377 </when> | |
| 6378 <when value="library_layout"> | |
| 6379 <param name="operation" type="select" label="Operator"> | |
| 6380 <option value="equal">equal</option> | |
| 6381 <option value="different">different</option> | |
| 6382 </param> | |
| 6383 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6384 </when> | |
| 6385 <when value="library_source"> | |
| 6386 <param name="operation" type="select" label="Operator"> | |
| 6387 <option value="equal">equal</option> | |
| 6388 <option value="different">different</option> | |
| 6389 </param> | |
| 6390 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6391 </when> | |
| 6392 <when value="experiment_title"> | |
| 6393 <param name="operation" type="select" label="Operator"> | |
| 6394 <option value="equal">equal</option> | |
| 6395 <option value="different">different</option> | |
| 6396 </param> | |
| 6397 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6398 </when> | |
| 6399 <when value="first_public"> | |
| 6400 <param name="operation" type="select" label="Operator"> | |
| 6401 <option value="equal">equal</option> | |
| 6402 <option value="different">different</option> | |
| 6403 <option value="lower">lower</option> | |
| 6404 <option value="equal or lower">equal or lower</option> | |
| 6405 <option value="higher">higher</option> | |
| 6406 <option value="equal or higher">equal or higher</option> | |
| 6407 </param> | |
| 6408 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 6409 </when> | |
| 6410 <when value="instrument_platform"> | |
| 6411 <param name="operation" type="select" label="Operator"> | |
| 6412 <option value="equal">equal</option> | |
| 6413 <option value="different">different</option> | |
| 6414 </param> | |
| 6415 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6416 </when> | |
| 6417 <when value="instrument_model"> | |
| 6418 <param name="operation" type="select" label="Operator"> | |
| 6419 <option value="equal">equal</option> | |
| 6420 <option value="different">different</option> | |
| 6421 </param> | |
| 6422 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6423 </when> | |
| 6424 <when value="sample_accession"> | |
| 6425 <param name="operation" type="select" label="Operator"> | |
| 6426 <option value="equal">equal</option> | |
| 6427 <option value="different">different</option> | |
| 6428 </param> | |
| 6429 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6430 </when> | |
| 6431 <when value="experiment_alias"> | |
| 6432 <param name="operation" type="select" label="Operator"> | |
| 6433 <option value="equal">equal</option> | |
| 6434 <option value="different">different</option> | |
| 6435 </param> | |
| 6436 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6437 </when> | |
| 6438 <when value="study_title"> | |
| 6439 <param name="operation" type="select" label="Operator"> | |
| 6440 <option value="equal">equal</option> | |
| 6441 <option value="different">different</option> | |
| 6442 </param> | |
| 6443 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6444 </when> | |
| 6445 </conditional> | |
| 6446 </repeat> | |
| 6447 <conditional name="display_opt"> | |
| 6448 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 6449 <expand macro="display_options"/> | |
| 6450 </param> | |
| 6451 <when value="xml"> | |
| 6452 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6453 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6454 </when> | |
| 6455 <when value="text"> | |
| 6456 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6457 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6458 </when> | |
| 6459 <when value="fastq"/> | |
| 6460 <when value="html"> | |
| 6461 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6462 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6463 </when> | |
| 6464 <when value="report"> | |
| 6465 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6466 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6467 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 6468 <option value="study_accession">study_accession</option> | |
| 6469 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 6470 <option value="sample_accession">sample_accession</option> | |
| 6471 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 6472 <option value="experiment_accession">experiment_accession</option> | |
| 6473 <option value="run_accession">run_accession</option> | |
| 6474 <option value="submission_accession">submission_accession</option> | |
| 6475 <option value="tax_id">tax_id</option> | |
| 6476 <option value="scientific_name">scientific_name</option> | |
| 6477 <option value="instrument_platform">instrument_platform</option> | |
| 6478 <option value="instrument_model">instrument_model</option> | |
| 6479 <option value="library_name">library_name</option> | |
| 6480 <option value="nominal_length">nominal_length</option> | |
| 6481 <option value="library_layout">library_layout</option> | |
| 6482 <option value="library_strategy">library_strategy</option> | |
| 6483 <option value="library_source">library_source</option> | |
| 6484 <option value="library_selection">library_selection</option> | |
| 6485 <option value="read_count">read_count</option> | |
| 6486 <option value="base_count">base_count</option> | |
| 6487 <option value="center_name">center_name</option> | |
| 6488 <option value="first_public">first_public</option> | |
| 6489 <option value="last_updated">last_updated</option> | |
| 6490 <option value="experiment_title">experiment_title</option> | |
| 6491 <option value="study_title">study_title</option> | |
| 6492 <option value="study_alias">study_alias</option> | |
| 6493 <option value="experiment_alias">experiment_alias</option> | |
| 6494 <option value="run_alias">run_alias</option> | |
| 6495 <option value="fastq_bytes">fastq_bytes</option> | |
| 6496 <option value="fastq_md5">fastq_md5</option> | |
| 6497 <option value="fastq_ftp">fastq_ftp</option> | |
| 6498 <option value="fastq_aspera">fastq_aspera</option> | |
| 6499 <option value="fastq_galaxy">fastq_galaxy</option> | |
| 6500 <option value="submitted_bytes">submitted_bytes</option> | |
| 6501 <option value="submitted_md5">submitted_md5</option> | |
| 6502 <option value="submitted_ftp">submitted_ftp</option> | |
| 6503 <option value="submitted_aspera">submitted_aspera</option> | |
| 6504 <option value="submitted_galaxy">submitted_galaxy</option> | |
| 6505 <option value="submitted_format">submitted_format</option> | |
| 6506 <option value="sra_bytes">sra_bytes</option> | |
| 6507 <option value="sra_md5">sra_md5</option> | |
| 6508 <option value="sra_ftp">sra_ftp</option> | |
| 6509 <option value="sra_aspera">sra_aspera</option> | |
| 6510 <option value="sra_galaxy">sra_galaxy</option> | |
| 6511 <option value="cram_index_ftp">cram_index_ftp</option> | |
| 6512 <option value="cram_index_aspera">cram_index_aspera</option> | |
| 6513 <option value="cram_index_galaxy">cram_index_galaxy</option> | |
| 6514 <option value="sample_alias">sample_alias</option> | |
| 6515 <option value="broker_name">broker_name</option> | |
| 6516 </param> | |
| 6517 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 6518 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 6519 <option value="library_name">sequencing library name</option> | |
| 6520 <option value="read_count">number of reads</option> | |
| 6521 <option value="last_updated">date when last updated</option> | |
| 6522 <option value="center_name">Submitting center</option> | |
| 6523 <option value="submission_accession">submission accession number</option> | |
| 6524 <option value="nominal_length">average fragmentation size of paired reads</option> | |
| 6525 <option value="base_count">number of base pairs</option> | |
| 6526 <option value="run_accession">run accession number</option> | |
| 6527 <option value="library_selection">method used to select or enrich the material being sequenced</option> | |
| 6528 <option value="library_strategy">sequencing technique intended for the library</option> | |
| 6529 <option value="experiment_accession">experiment accession number</option> | |
| 6530 <option value="study_alias">submitter's name for the study</option> | |
| 6531 <option value="submitted_format"></option> | |
| 6532 <option value="broker_name">broker name</option> | |
| 6533 <option value="sample_alias">submitter's name for the sample</option> | |
| 6534 <option value="run_alias">submitter's name for the run</option> | |
| 6535 <option value="secondary_study_accession">project accession number</option> | |
| 6536 <option value="study_accession">study accession number</option> | |
| 6537 <option value="library_layout">sequencing library layout</option> | |
| 6538 <option value="library_source">source material being sequenced</option> | |
| 6539 <option value="experiment_title">brief experiment title</option> | |
| 6540 <option value="first_public">date when made public</option> | |
| 6541 <option value="instrument_platform">instrument platform used in sequencing experiment</option> | |
| 6542 <option value="instrument_model">instrument model used in sequencing experiment</option> | |
| 6543 <option value="sample_accession">sample accession number</option> | |
| 6544 <option value="experiment_alias">submitter's name for the experiment</option> | |
| 6545 <option value="study_title">brief sequencing study description</option> | |
| 6546 </param> | |
| 6547 </when> | |
| 6548 <when value="fasta"/> | |
| 6549 </conditional> | |
| 6550 </when> | |
| 6551 <when value="read_study"> | |
| 6552 <repeat name="queries" title="Add a query"> | |
| 6553 <param name="combination_operation" type="select" label="Combination operation"> | |
| 6554 <option value="AND">AND</option> | |
| 6555 <option value="OR">OR</option> | |
| 6556 <option value="NOT">NOT</option> | |
| 6557 </param> | |
| 6558 <conditional name="filter_field"> | |
| 6559 <param name="field" type="select" label="Field to query"> | |
| 6560 <option value="study_title">brief sequencing study description</option> | |
| 6561 <option value="secondary_study_accession">project accession number</option> | |
| 6562 <option value="study_alias">submitter's name for the study</option> | |
| 6563 <option value="study_accession">study accession number</option> | |
| 6564 </param> | |
| 6565 <when value="study_title"> | |
| 6566 <param name="operation" type="select" label="Operator"> | |
| 6567 <option value="equal">equal</option> | |
| 6568 <option value="different">different</option> | |
| 6569 </param> | |
| 6570 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6571 </when> | |
| 6572 <when value="secondary_study_accession"> | |
| 6573 <param name="operation" type="select" label="Operator"> | |
| 6574 <option value="equal">equal</option> | |
| 6575 <option value="different">different</option> | |
| 6576 </param> | |
| 6577 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6578 </when> | |
| 6579 <when value="study_alias"> | |
| 6580 <param name="operation" type="select" label="Operator"> | |
| 6581 <option value="equal">equal</option> | |
| 6582 <option value="different">different</option> | |
| 6583 </param> | |
| 6584 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6585 </when> | |
| 6586 <when value="study_accession"> | |
| 6587 <param name="operation" type="select" label="Operator"> | |
| 6588 <option value="equal">equal</option> | |
| 6589 <option value="different">different</option> | |
| 6590 </param> | |
| 6591 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6592 </when> | |
| 6593 </conditional> | |
| 6594 </repeat> | |
| 6595 <conditional name="display_opt"> | |
| 6596 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 6597 <expand macro="display_options"/> | |
| 6598 </param> | |
| 6599 <when value="xml"> | |
| 6600 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6601 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6602 </when> | |
| 6603 <when value="text"> | |
| 6604 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6605 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6606 </when> | |
| 6607 <when value="fastq"/> | |
| 6608 <when value="html"> | |
| 6609 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6610 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6611 </when> | |
| 6612 <when value="report"> | |
| 6613 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6614 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6615 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 6616 <option value="study_accession">study_accession</option> | |
| 6617 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 6618 <option value="study_title">study_title</option> | |
| 6619 <option value="study_alias">study_alias</option> | |
| 6620 </param> | |
| 6621 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 6622 <option value="study_title">brief sequencing study description</option> | |
| 6623 <option value="secondary_study_accession">project accession number</option> | |
| 6624 <option value="study_alias">submitter's name for the study</option> | |
| 6625 <option value="study_accession">study accession number</option> | |
| 6626 </param> | |
| 6627 </when> | |
| 6628 <when value="fasta"/> | |
| 6629 </conditional> | |
| 6630 </when> | |
| 6631 <when value="read_experiment"> | |
| 6632 <repeat name="queries" title="Add a query"> | |
| 6633 <param name="combination_operation" type="select" label="Combination operation"> | |
| 6634 <option value="AND">AND</option> | |
| 6635 <option value="OR">OR</option> | |
| 6636 <option value="NOT">NOT</option> | |
| 6637 </param> | |
| 6638 <conditional name="filter_field"> | |
| 6639 <param name="field" type="select" label="Field to query"> | |
| 6640 <option value="library_name">sequencing library name</option> | |
| 6641 <option value="study_title">brief sequencing study description</option> | |
| 6642 <option value="instrument_platform">instrument platform used in sequencing experiment</option> | |
| 6643 <option value="instrument_model">instrument model used in sequencing experiment</option> | |
| 6644 <option value="study_alias">submitter's name for the study</option> | |
| 6645 <option value="experiment_alias">submitter's name for the experiment</option> | |
| 6646 <option value="secondary_study_accession">project accession number</option> | |
| 6647 <option value="study_accession">study accession number</option> | |
| 6648 <option value="library_selection">method used to select or enrich the material being sequenced</option> | |
| 6649 <option value="library_layout">sequencing library layout</option> | |
| 6650 <option value="library_strategy">sequencing technique intended for the library</option> | |
| 6651 <option value="experiment_accession">experiment accession number</option> | |
| 6652 <option value="library_source">source material being sequenced</option> | |
| 6653 <option value="experiment_title">brief experiment title</option> | |
| 6654 </param> | |
| 6655 <when value="library_name"> | |
| 6656 <param name="operation" type="select" label="Operator"> | |
| 6657 <option value="equal">equal</option> | |
| 6658 <option value="different">different</option> | |
| 6659 </param> | |
| 6660 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6661 </when> | |
| 6662 <when value="study_title"> | |
| 6663 <param name="operation" type="select" label="Operator"> | |
| 6664 <option value="equal">equal</option> | |
| 6665 <option value="different">different</option> | |
| 6666 </param> | |
| 6667 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6668 </when> | |
| 6669 <when value="instrument_platform"> | |
| 6670 <param name="operation" type="select" label="Operator"> | |
| 6671 <option value="equal">equal</option> | |
| 6672 <option value="different">different</option> | |
| 6673 </param> | |
| 6674 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6675 </when> | |
| 6676 <when value="instrument_model"> | |
| 6677 <param name="operation" type="select" label="Operator"> | |
| 6678 <option value="equal">equal</option> | |
| 6679 <option value="different">different</option> | |
| 6680 </param> | |
| 6681 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6682 </when> | |
| 6683 <when value="study_alias"> | |
| 6684 <param name="operation" type="select" label="Operator"> | |
| 6685 <option value="equal">equal</option> | |
| 6686 <option value="different">different</option> | |
| 6687 </param> | |
| 6688 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6689 </when> | |
| 6690 <when value="experiment_alias"> | |
| 6691 <param name="operation" type="select" label="Operator"> | |
| 6692 <option value="equal">equal</option> | |
| 6693 <option value="different">different</option> | |
| 6694 </param> | |
| 6695 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6696 </when> | |
| 6697 <when value="secondary_study_accession"> | |
| 6698 <param name="operation" type="select" label="Operator"> | |
| 6699 <option value="equal">equal</option> | |
| 6700 <option value="different">different</option> | |
| 6701 </param> | |
| 6702 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6703 </when> | |
| 6704 <when value="study_accession"> | |
| 6705 <param name="operation" type="select" label="Operator"> | |
| 6706 <option value="equal">equal</option> | |
| 6707 <option value="different">different</option> | |
| 6708 </param> | |
| 6709 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6710 </when> | |
| 6711 <when value="library_selection"> | |
| 6712 <param name="operation" type="select" label="Operator"> | |
| 6713 <option value="equal">equal</option> | |
| 6714 <option value="different">different</option> | |
| 6715 </param> | |
| 6716 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6717 </when> | |
| 6718 <when value="library_layout"> | |
| 6719 <param name="operation" type="select" label="Operator"> | |
| 6720 <option value="equal">equal</option> | |
| 6721 <option value="different">different</option> | |
| 6722 </param> | |
| 6723 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6724 </when> | |
| 6725 <when value="library_strategy"> | |
| 6726 <param name="operation" type="select" label="Operator"> | |
| 6727 <option value="equal">equal</option> | |
| 6728 <option value="different">different</option> | |
| 6729 </param> | |
| 6730 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6731 </when> | |
| 6732 <when value="experiment_accession"> | |
| 6733 <param name="operation" type="select" label="Operator"> | |
| 6734 <option value="equal">equal</option> | |
| 6735 <option value="different">different</option> | |
| 6736 </param> | |
| 6737 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6738 </when> | |
| 6739 <when value="library_source"> | |
| 6740 <param name="operation" type="select" label="Operator"> | |
| 6741 <option value="equal">equal</option> | |
| 6742 <option value="different">different</option> | |
| 6743 </param> | |
| 6744 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6745 </when> | |
| 6746 <when value="experiment_title"> | |
| 6747 <param name="operation" type="select" label="Operator"> | |
| 6748 <option value="equal">equal</option> | |
| 6749 <option value="different">different</option> | |
| 6750 </param> | |
| 6751 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6752 </when> | |
| 6753 </conditional> | |
| 6754 </repeat> | |
| 6755 <conditional name="display_opt"> | |
| 6756 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 6757 <expand macro="display_options"/> | |
| 6758 </param> | |
| 6759 <when value="xml"> | |
| 6760 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6761 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6762 </when> | |
| 6763 <when value="text"> | |
| 6764 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6765 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6766 </when> | |
| 6767 <when value="fastq"/> | |
| 6768 <when value="html"> | |
| 6769 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6770 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6771 </when> | |
| 6772 <when value="report"> | |
| 6773 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6774 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6775 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 6776 <option value="study_accession">study_accession</option> | |
| 6777 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 6778 <option value="experiment_accession">experiment_accession</option> | |
| 6779 <option value="instrument_platform">instrument_platform</option> | |
| 6780 <option value="instrument_model">instrument_model</option> | |
| 6781 <option value="library_name">library_name</option> | |
| 6782 <option value="library_layout">library_layout</option> | |
| 6783 <option value="library_strategy">library_strategy</option> | |
| 6784 <option value="library_source">library_source</option> | |
| 6785 <option value="library_selection">library_selection</option> | |
| 6786 <option value="experiment_title">experiment_title</option> | |
| 6787 <option value="study_title">study_title</option> | |
| 6788 <option value="study_alias">study_alias</option> | |
| 6789 <option value="experiment_alias">experiment_alias</option> | |
| 6790 </param> | |
| 6791 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 6792 <option value="library_name">sequencing library name</option> | |
| 6793 <option value="study_title">brief sequencing study description</option> | |
| 6794 <option value="instrument_platform">instrument platform used in sequencing experiment</option> | |
| 6795 <option value="instrument_model">instrument model used in sequencing experiment</option> | |
| 6796 <option value="study_alias">submitter's name for the study</option> | |
| 6797 <option value="experiment_alias">submitter's name for the experiment</option> | |
| 6798 <option value="secondary_study_accession">project accession number</option> | |
| 6799 <option value="study_accession">study accession number</option> | |
| 6800 <option value="library_selection">method used to select or enrich the material being sequenced</option> | |
| 6801 <option value="library_layout">sequencing library layout</option> | |
| 6802 <option value="library_strategy">sequencing technique intended for the library</option> | |
| 6803 <option value="experiment_accession">experiment accession number</option> | |
| 6804 <option value="library_source">source material being sequenced</option> | |
| 6805 <option value="experiment_title">brief experiment title</option> | |
| 6806 </param> | |
| 6807 </when> | |
| 6808 <when value="fasta"/> | |
| 6809 </conditional> | |
| 6810 </when> | |
| 6811 <when value="analysis"> | |
| 6812 <repeat name="queries" title="Add a query"> | |
| 6813 <param name="combination_operation" type="select" label="Combination operation"> | |
| 6814 <option value="AND">AND</option> | |
| 6815 <option value="OR">OR</option> | |
| 6816 <option value="NOT">NOT</option> | |
| 6817 </param> | |
| 6818 <conditional name="filter_field"> | |
| 6819 <param name="field" type="select" label="Field to query"> | |
| 6820 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 6821 <option value="broker_name">broker name</option> | |
| 6822 <option value="study_accession">study accession number</option> | |
| 6823 <option value="last_updated">date when last updated</option> | |
| 6824 <option value="first_public">date when made public</option> | |
| 6825 <option value="sample_alias">submitter's name for the sample</option> | |
| 6826 <option value="center_name">Submitting center</option> | |
| 6827 <option value="analysis_title">brief sequence analysis description</option> | |
| 6828 <option value="sample_accession">sample accession number</option> | |
| 6829 <option value="analysis_accession">analysis accession number</option> | |
| 6830 <option value="secondary_study_accession">project accession number</option> | |
| 6831 <option value="analysis_alias">submitter's name for the analysis</option> | |
| 6832 <option value="analysis_type">type of sequence analysis</option> | |
| 6833 <option value="study_title">brief sequencing study description</option> | |
| 6834 <option value="study_alias">submitter's name for the study</option> | |
| 6835 </param> | |
| 6836 <when value="secondary_sample_accession"> | |
| 6837 <param name="operation" type="select" label="Operator"> | |
| 6838 <option value="equal">equal</option> | |
| 6839 <option value="different">different</option> | |
| 6840 </param> | |
| 6841 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6842 </when> | |
| 6843 <when value="broker_name"> | |
| 6844 <param name="operation" type="select" label="Operator"> | |
| 6845 <option value="equal">equal</option> | |
| 6846 <option value="different">different</option> | |
| 6847 </param> | |
| 6848 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6849 </when> | |
| 6850 <when value="study_accession"> | |
| 6851 <param name="operation" type="select" label="Operator"> | |
| 6852 <option value="equal">equal</option> | |
| 6853 <option value="different">different</option> | |
| 6854 </param> | |
| 6855 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6856 </when> | |
| 6857 <when value="last_updated"> | |
| 6858 <param name="operation" type="select" label="Operator"> | |
| 6859 <option value="equal">equal</option> | |
| 6860 <option value="different">different</option> | |
| 6861 <option value="lower">lower</option> | |
| 6862 <option value="equal or lower">equal or lower</option> | |
| 6863 <option value="higher">higher</option> | |
| 6864 <option value="equal or higher">equal or higher</option> | |
| 6865 </param> | |
| 6866 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 6867 </when> | |
| 6868 <when value="first_public"> | |
| 6869 <param name="operation" type="select" label="Operator"> | |
| 6870 <option value="equal">equal</option> | |
| 6871 <option value="different">different</option> | |
| 6872 <option value="lower">lower</option> | |
| 6873 <option value="equal or lower">equal or lower</option> | |
| 6874 <option value="higher">higher</option> | |
| 6875 <option value="equal or higher">equal or higher</option> | |
| 6876 </param> | |
| 6877 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 6878 </when> | |
| 6879 <when value="sample_alias"> | |
| 6880 <param name="operation" type="select" label="Operator"> | |
| 6881 <option value="equal">equal</option> | |
| 6882 <option value="different">different</option> | |
| 6883 </param> | |
| 6884 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6885 </when> | |
| 6886 <when value="center_name"> | |
| 6887 <param name="operation" type="select" label="Operator"> | |
| 6888 <option value="equal">equal</option> | |
| 6889 <option value="different">different</option> | |
| 6890 </param> | |
| 6891 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6892 </when> | |
| 6893 <when value="analysis_title"> | |
| 6894 <param name="operation" type="select" label="Operator"> | |
| 6895 <option value="equal">equal</option> | |
| 6896 <option value="different">different</option> | |
| 6897 </param> | |
| 6898 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6899 </when> | |
| 6900 <when value="sample_accession"> | |
| 6901 <param name="operation" type="select" label="Operator"> | |
| 6902 <option value="equal">equal</option> | |
| 6903 <option value="different">different</option> | |
| 6904 </param> | |
| 6905 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6906 </when> | |
| 6907 <when value="analysis_accession"> | |
| 6908 <param name="operation" type="select" label="Operator"> | |
| 6909 <option value="equal">equal</option> | |
| 6910 <option value="different">different</option> | |
| 6911 </param> | |
| 6912 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6913 </when> | |
| 6914 <when value="secondary_study_accession"> | |
| 6915 <param name="operation" type="select" label="Operator"> | |
| 6916 <option value="equal">equal</option> | |
| 6917 <option value="different">different</option> | |
| 6918 </param> | |
| 6919 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6920 </when> | |
| 6921 <when value="analysis_alias"> | |
| 6922 <param name="operation" type="select" label="Operator"> | |
| 6923 <option value="equal">equal</option> | |
| 6924 <option value="different">different</option> | |
| 6925 </param> | |
| 6926 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6927 </when> | |
| 6928 <when value="analysis_type"> | |
| 6929 <param name="operation" type="select" label="Operator"> | |
| 6930 <option value="equal">equal</option> | |
| 6931 <option value="different">different</option> | |
| 6932 </param> | |
| 6933 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 6934 </when> | |
| 6935 <when value="study_title"> | |
| 6936 <param name="operation" type="select" label="Operator"> | |
| 6937 <option value="equal">equal</option> | |
| 6938 <option value="different">different</option> | |
| 6939 </param> | |
| 6940 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6941 </when> | |
| 6942 <when value="study_alias"> | |
| 6943 <param name="operation" type="select" label="Operator"> | |
| 6944 <option value="equal">equal</option> | |
| 6945 <option value="different">different</option> | |
| 6946 </param> | |
| 6947 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 6948 </when> | |
| 6949 </conditional> | |
| 6950 </repeat> | |
| 6951 <conditional name="display_opt"> | |
| 6952 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 6953 <expand macro="display_options"/> | |
| 6954 </param> | |
| 6955 <when value="xml"> | |
| 6956 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6957 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6958 </when> | |
| 6959 <when value="text"> | |
| 6960 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6961 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6962 </when> | |
| 6963 <when value="fastq"/> | |
| 6964 <when value="html"> | |
| 6965 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6966 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6967 </when> | |
| 6968 <when value="report"> | |
| 6969 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 6970 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 6971 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 6972 <option value="analysis_accession">analysis_accession</option> | |
| 6973 <option value="study_accession">study_accession</option> | |
| 6974 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 6975 <option value="sample_accession">sample_accession</option> | |
| 6976 <option value="secondary_sample_accession">secondary_sample_accession</option> | |
| 6977 <option value="analysis_title">analysis_title</option> | |
| 6978 <option value="analysis_type">analysis_type</option> | |
| 6979 <option value="center_name">center_name</option> | |
| 6980 <option value="first_public">first_public</option> | |
| 6981 <option value="last_updated">last_updated</option> | |
| 6982 <option value="study_title">study_title</option> | |
| 6983 <option value="tax_id">tax_id</option> | |
| 6984 <option value="scientific_name">scientific_name</option> | |
| 6985 <option value="analysis_alias">analysis_alias</option> | |
| 6986 <option value="study_alias">study_alias</option> | |
| 6987 <option value="submitted_bytes">submitted_bytes</option> | |
| 6988 <option value="submitted_md5">submitted_md5</option> | |
| 6989 <option value="submitted_ftp">submitted_ftp</option> | |
| 6990 <option value="submitted_aspera">submitted_aspera</option> | |
| 6991 <option value="submitted_galaxy">submitted_galaxy</option> | |
| 6992 <option value="sample_alias">sample_alias</option> | |
| 6993 <option value="broker_name">broker_name</option> | |
| 6994 </param> | |
| 6995 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 6996 <option value="secondary_sample_accession">secondary sample accession number</option> | |
| 6997 <option value="broker_name">broker name</option> | |
| 6998 <option value="study_accession">study accession number</option> | |
| 6999 <option value="last_updated">date when last updated</option> | |
| 7000 <option value="first_public">date when made public</option> | |
| 7001 <option value="sample_alias">submitter's name for the sample</option> | |
| 7002 <option value="center_name">Submitting center</option> | |
| 7003 <option value="analysis_title">brief sequence analysis description</option> | |
| 7004 <option value="sample_accession">sample accession number</option> | |
| 7005 <option value="analysis_accession">analysis accession number</option> | |
| 7006 <option value="secondary_study_accession">project accession number</option> | |
| 7007 <option value="analysis_alias">submitter's name for the analysis</option> | |
| 7008 <option value="analysis_type">type of sequence analysis</option> | |
| 7009 <option value="study_title">brief sequencing study description</option> | |
| 7010 <option value="study_alias">submitter's name for the study</option> | |
| 7011 </param> | |
| 7012 </when> | |
| 7013 <when value="fasta"/> | |
| 7014 </conditional> | |
| 7015 </when> | |
| 7016 <when value="sequence_update"> | |
| 7017 <repeat name="queries" title="Add a query"> | |
| 7018 <param name="combination_operation" type="select" label="Combination operation"> | |
| 7019 <option value="AND">AND</option> | |
| 7020 <option value="OR">OR</option> | |
| 7021 <option value="NOT">NOT</option> | |
| 7022 </param> | |
| 7023 <conditional name="filter_field"> | |
| 7024 <param name="field" type="select" label="Field to query"> | |
| 7025 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 7026 <option value="last_updated">date when last updated</option> | |
| 7027 <option value="sequence_md5"></option> | |
| 7028 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 7029 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 7030 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 7031 <option value="keywords">keywords associated with sequence</option> | |
| 7032 <option value="collected_by">name of the person who collected the specimen</option> | |
| 7033 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 7034 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 7035 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 7036 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 7037 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 7038 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 7039 <option value="tax_division">taxonomic division</option> | |
| 7040 <option value="collection_date">date that the specimen was collected</option> | |
| 7041 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 7042 <option value="altitude">Altitude (m)</option> | |
| 7043 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 7044 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 7045 <option value="location">geographic location of isolation of the sample</option> | |
| 7046 <option value="study_accession">study accession number</option> | |
| 7047 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 7048 <option value="description">brief sequence description</option> | |
| 7049 <option value="accession">accession number</option> | |
| 7050 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 7051 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 7052 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 7053 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 7054 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 7055 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 7056 <option value="base_count">number of base pairs</option> | |
| 7057 <option value="topology">sequence topology: circular or linear</option> | |
| 7058 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 7059 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 7060 <option value="first_public">date when made public</option> | |
| 7061 <option value="strain">strain from which sample was obtained</option> | |
| 7062 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 7063 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 7064 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 7065 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 7066 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 7067 <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option> | |
| 7068 <option value="dataclass">sequence data class</option> | |
| 7069 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 7070 </param> | |
| 7071 <when value="mol_type"> | |
| 7072 <param name="operation" type="select" label="Operator"> | |
| 7073 <option value="equal">equal</option> | |
| 7074 <option value="different">different</option> | |
| 7075 </param> | |
| 7076 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7077 </when> | |
| 7078 <when value="last_updated"> | |
| 7079 <param name="operation" type="select" label="Operator"> | |
| 7080 <option value="equal">equal</option> | |
| 7081 <option value="different">different</option> | |
| 7082 <option value="lower">lower</option> | |
| 7083 <option value="equal or lower">equal or lower</option> | |
| 7084 <option value="higher">higher</option> | |
| 7085 <option value="equal or higher">equal or higher</option> | |
| 7086 </param> | |
| 7087 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 7088 </when> | |
| 7089 <when value="sequence_md5"> | |
| 7090 <param name="operation" type="select" label="Operator"> | |
| 7091 <option value="equal">equal</option> | |
| 7092 <option value="different">different</option> | |
| 7093 </param> | |
| 7094 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7095 </when> | |
| 7096 <when value="haplotype"> | |
| 7097 <param name="operation" type="select" label="Operator"> | |
| 7098 <option value="equal">equal</option> | |
| 7099 <option value="different">different</option> | |
| 7100 </param> | |
| 7101 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7102 </when> | |
| 7103 <when value="serotype"> | |
| 7104 <param name="operation" type="select" label="Operator"> | |
| 7105 <option value="equal">equal</option> | |
| 7106 <option value="different">different</option> | |
| 7107 </param> | |
| 7108 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7109 </when> | |
| 7110 <when value="sex"> | |
| 7111 <param name="operation" type="select" label="Operator"> | |
| 7112 <option value="equal">equal</option> | |
| 7113 <option value="different">different</option> | |
| 7114 </param> | |
| 7115 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7116 </when> | |
| 7117 <when value="keywords"> | |
| 7118 <param name="operation" type="select" label="Operator"> | |
| 7119 <option value="equal">equal</option> | |
| 7120 <option value="different">different</option> | |
| 7121 </param> | |
| 7122 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7123 </when> | |
| 7124 <when value="collected_by"> | |
| 7125 <param name="operation" type="select" label="Operator"> | |
| 7126 <option value="equal">equal</option> | |
| 7127 <option value="different">different</option> | |
| 7128 </param> | |
| 7129 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7130 </when> | |
| 7131 <when value="cell_line"> | |
| 7132 <param name="operation" type="select" label="Operator"> | |
| 7133 <option value="equal">equal</option> | |
| 7134 <option value="different">different</option> | |
| 7135 </param> | |
| 7136 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7137 </when> | |
| 7138 <when value="ecotype"> | |
| 7139 <param name="operation" type="select" label="Operator"> | |
| 7140 <option value="equal">equal</option> | |
| 7141 <option value="different">different</option> | |
| 7142 </param> | |
| 7143 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7144 </when> | |
| 7145 <when value="bio_material"> | |
| 7146 <param name="operation" type="select" label="Operator"> | |
| 7147 <option value="equal">equal</option> | |
| 7148 <option value="different">different</option> | |
| 7149 </param> | |
| 7150 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7151 </when> | |
| 7152 <when value="identified_by"> | |
| 7153 <param name="operation" type="select" label="Operator"> | |
| 7154 <option value="equal">equal</option> | |
| 7155 <option value="different">different</option> | |
| 7156 </param> | |
| 7157 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7158 </when> | |
| 7159 <when value="cell_type"> | |
| 7160 <param name="operation" type="select" label="Operator"> | |
| 7161 <option value="equal">equal</option> | |
| 7162 <option value="different">different</option> | |
| 7163 </param> | |
| 7164 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7165 </when> | |
| 7166 <when value="lab_host"> | |
| 7167 <param name="operation" type="select" label="Operator"> | |
| 7168 <option value="equal">equal</option> | |
| 7169 <option value="different">different</option> | |
| 7170 </param> | |
| 7171 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7172 </when> | |
| 7173 <when value="tax_division"> | |
| 7174 <param name="operation" type="select" label="Operator"> | |
| 7175 <option value="equal">equal</option> | |
| 7176 <option value="different">different</option> | |
| 7177 </param> | |
| 7178 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7179 </when> | |
| 7180 <when value="collection_date"> | |
| 7181 <param name="operation" type="select" label="Operator"> | |
| 7182 <option value="equal">equal</option> | |
| 7183 <option value="different">different</option> | |
| 7184 <option value="lower">lower</option> | |
| 7185 <option value="equal or lower">equal or lower</option> | |
| 7186 <option value="higher">higher</option> | |
| 7187 <option value="equal or higher">equal or higher</option> | |
| 7188 </param> | |
| 7189 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 7190 </when> | |
| 7191 <when value="specimen_voucher"> | |
| 7192 <param name="operation" type="select" label="Operator"> | |
| 7193 <option value="equal">equal</option> | |
| 7194 <option value="different">different</option> | |
| 7195 </param> | |
| 7196 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7197 </when> | |
| 7198 <when value="altitude"> | |
| 7199 <param name="operation" type="select" label="Operator"> | |
| 7200 <option value="equal">equal</option> | |
| 7201 <option value="different">different</option> | |
| 7202 <option value="lower">lower</option> | |
| 7203 <option value="equal or lower">equal or lower</option> | |
| 7204 <option value="higher">higher</option> | |
| 7205 <option value="equal or higher">equal or higher</option> | |
| 7206 </param> | |
| 7207 <param name="value" type="float" value="" label="Any integer"/> | |
| 7208 </when> | |
| 7209 <when value="dev_stage"> | |
| 7210 <param name="operation" type="select" label="Operator"> | |
| 7211 <option value="equal">equal</option> | |
| 7212 <option value="different">different</option> | |
| 7213 </param> | |
| 7214 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7215 </when> | |
| 7216 <when value="isolate"> | |
| 7217 <param name="operation" type="select" label="Operator"> | |
| 7218 <option value="equal">equal</option> | |
| 7219 <option value="different">different</option> | |
| 7220 </param> | |
| 7221 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7222 </when> | |
| 7223 <when value="location"> | |
| 7224 <conditional name="op"> | |
| 7225 <param name="operation" type="select" label="Operation"> | |
| 7226 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 7227 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 7228 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 7229 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 7230 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 7231 <option value="geo_point">An exact lat/lon position</option> | |
| 7232 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 7233 </param> | |
| 7234 <when value="geo_box2"> | |
| 7235 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 7236 </when> | |
| 7237 <when value="geo_box1"> | |
| 7238 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 7239 </when> | |
| 7240 <when value="geo_circ"> | |
| 7241 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 7242 </when> | |
| 7243 <when value="geo_lat"> | |
| 7244 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 7245 </when> | |
| 7246 <when value="geo_south"> | |
| 7247 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 7248 </when> | |
| 7249 <when value="geo_point"> | |
| 7250 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 7251 </when> | |
| 7252 <when value="geo_north"> | |
| 7253 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 7254 </when> | |
| 7255 </conditional> | |
| 7256 </when> | |
| 7257 <when value="study_accession"> | |
| 7258 <param name="operation" type="select" label="Operator"> | |
| 7259 <option value="equal">equal</option> | |
| 7260 <option value="different">different</option> | |
| 7261 </param> | |
| 7262 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7263 </when> | |
| 7264 <when value="germline"> | |
| 7265 <param name="operation" type="select" label="Operator"> | |
| 7266 <option value="equal">equal</option> | |
| 7267 </param> | |
| 7268 <param name="value" type="select" label="Value"> | |
| 7269 <option value="yes">yes</option> | |
| 7270 <option value="true">true</option> | |
| 7271 <option value="no">no</option> | |
| 7272 <option value="false">false</option> | |
| 7273 </param> | |
| 7274 </when> | |
| 7275 <when value="description"> | |
| 7276 <param name="operation" type="select" label="Operator"> | |
| 7277 <option value="equal">equal</option> | |
| 7278 <option value="different">different</option> | |
| 7279 </param> | |
| 7280 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7281 </when> | |
| 7282 <when value="accession"> | |
| 7283 <param name="operation" type="select" label="Operator"> | |
| 7284 <option value="equal">equal</option> | |
| 7285 <option value="different">different</option> | |
| 7286 </param> | |
| 7287 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7288 </when> | |
| 7289 <when value="isolation_source"> | |
| 7290 <param name="operation" type="select" label="Operator"> | |
| 7291 <option value="equal">equal</option> | |
| 7292 <option value="different">different</option> | |
| 7293 </param> | |
| 7294 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7295 </when> | |
| 7296 <when value="mating_type"> | |
| 7297 <param name="operation" type="select" label="Operator"> | |
| 7298 <option value="equal">equal</option> | |
| 7299 <option value="different">different</option> | |
| 7300 </param> | |
| 7301 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7302 </when> | |
| 7303 <when value="tissue_type"> | |
| 7304 <param name="operation" type="select" label="Operator"> | |
| 7305 <option value="equal">equal</option> | |
| 7306 <option value="different">different</option> | |
| 7307 </param> | |
| 7308 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7309 </when> | |
| 7310 <when value="sub_strain"> | |
| 7311 <param name="operation" type="select" label="Operator"> | |
| 7312 <option value="equal">equal</option> | |
| 7313 <option value="different">different</option> | |
| 7314 </param> | |
| 7315 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7316 </when> | |
| 7317 <when value="tissue_lib"> | |
| 7318 <param name="operation" type="select" label="Operator"> | |
| 7319 <option value="equal">equal</option> | |
| 7320 <option value="different">different</option> | |
| 7321 </param> | |
| 7322 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7323 </when> | |
| 7324 <when value="cultivar"> | |
| 7325 <param name="operation" type="select" label="Operator"> | |
| 7326 <option value="equal">equal</option> | |
| 7327 <option value="different">different</option> | |
| 7328 </param> | |
| 7329 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7330 </when> | |
| 7331 <when value="base_count"> | |
| 7332 <param name="operation" type="select" label="Operator"> | |
| 7333 <option value="equal">equal</option> | |
| 7334 <option value="different">different</option> | |
| 7335 <option value="lower">lower</option> | |
| 7336 <option value="equal or lower">equal or lower</option> | |
| 7337 <option value="higher">higher</option> | |
| 7338 <option value="equal or higher">equal or higher</option> | |
| 7339 </param> | |
| 7340 <param name="value" type="float" value="" label="Any integer"/> | |
| 7341 </when> | |
| 7342 <when value="topology"> | |
| 7343 <param name="operation" type="select" label="Operator"> | |
| 7344 <option value="equal">equal</option> | |
| 7345 <option value="different">different</option> | |
| 7346 </param> | |
| 7347 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7348 </when> | |
| 7349 <when value="sub_species"> | |
| 7350 <param name="operation" type="select" label="Operator"> | |
| 7351 <option value="equal">equal</option> | |
| 7352 <option value="different">different</option> | |
| 7353 </param> | |
| 7354 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7355 </when> | |
| 7356 <when value="environmental_sample"> | |
| 7357 <param name="operation" type="select" label="Operator"> | |
| 7358 <option value="equal">equal</option> | |
| 7359 </param> | |
| 7360 <param name="value" type="select" label="Value"> | |
| 7361 <option value="yes">yes</option> | |
| 7362 <option value="true">true</option> | |
| 7363 <option value="no">no</option> | |
| 7364 <option value="false">false</option> | |
| 7365 </param> | |
| 7366 </when> | |
| 7367 <when value="first_public"> | |
| 7368 <param name="operation" type="select" label="Operator"> | |
| 7369 <option value="equal">equal</option> | |
| 7370 <option value="different">different</option> | |
| 7371 <option value="lower">lower</option> | |
| 7372 <option value="equal or lower">equal or lower</option> | |
| 7373 <option value="higher">higher</option> | |
| 7374 <option value="equal or higher">equal or higher</option> | |
| 7375 </param> | |
| 7376 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 7377 </when> | |
| 7378 <when value="strain"> | |
| 7379 <param name="operation" type="select" label="Operator"> | |
| 7380 <option value="equal">equal</option> | |
| 7381 <option value="different">different</option> | |
| 7382 </param> | |
| 7383 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7384 </when> | |
| 7385 <when value="country"> | |
| 7386 <param name="operation" type="select" label="Operator"> | |
| 7387 <option value="equal">equal</option> | |
| 7388 <option value="different">different</option> | |
| 7389 </param> | |
| 7390 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7391 </when> | |
| 7392 <when value="variety"> | |
| 7393 <param name="operation" type="select" label="Operator"> | |
| 7394 <option value="equal">equal</option> | |
| 7395 <option value="different">different</option> | |
| 7396 </param> | |
| 7397 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7398 </when> | |
| 7399 <when value="host"> | |
| 7400 <param name="operation" type="select" label="Operator"> | |
| 7401 <option value="equal">equal</option> | |
| 7402 <option value="different">different</option> | |
| 7403 </param> | |
| 7404 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7405 </when> | |
| 7406 <when value="organelle"> | |
| 7407 <param name="operation" type="select" label="Operator"> | |
| 7408 <option value="equal">equal</option> | |
| 7409 <option value="different">different</option> | |
| 7410 </param> | |
| 7411 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7412 </when> | |
| 7413 <when value="serovar"> | |
| 7414 <param name="operation" type="select" label="Operator"> | |
| 7415 <option value="equal">equal</option> | |
| 7416 <option value="different">different</option> | |
| 7417 </param> | |
| 7418 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7419 </when> | |
| 7420 <when value="plasmid"> | |
| 7421 <param name="operation" type="select" label="Operator"> | |
| 7422 <option value="equal">equal</option> | |
| 7423 <option value="different">different</option> | |
| 7424 </param> | |
| 7425 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7426 </when> | |
| 7427 <when value="dataclass"> | |
| 7428 <param name="operation" type="select" label="Operator"> | |
| 7429 <option value="equal">equal</option> | |
| 7430 <option value="different">different</option> | |
| 7431 </param> | |
| 7432 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7433 </when> | |
| 7434 <when value="culture_collection"> | |
| 7435 <param name="operation" type="select" label="Operator"> | |
| 7436 <option value="equal">equal</option> | |
| 7437 <option value="different">different</option> | |
| 7438 </param> | |
| 7439 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7440 </when> | |
| 7441 </conditional> | |
| 7442 </repeat> | |
| 7443 <conditional name="display_opt"> | |
| 7444 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 7445 <expand macro="display_options"/> | |
| 7446 </param> | |
| 7447 <when value="xml"> | |
| 7448 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 7449 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 7450 </when> | |
| 7451 <when value="text"> | |
| 7452 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 7453 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 7454 </when> | |
| 7455 <when value="fastq"/> | |
| 7456 <when value="html"> | |
| 7457 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 7458 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 7459 </when> | |
| 7460 <when value="report"> | |
| 7461 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 7462 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 7463 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 7464 <option value="accession">accession</option> | |
| 7465 <option value="base_count">base_count</option> | |
| 7466 <option value="bio_material">bio_material</option> | |
| 7467 <option value="cell_line">cell_line</option> | |
| 7468 <option value="cell_type">cell_type</option> | |
| 7469 <option value="collected_by">collected_by</option> | |
| 7470 <option value="collection_date">collection_date</option> | |
| 7471 <option value="country">country</option> | |
| 7472 <option value="cultivar">cultivar</option> | |
| 7473 <option value="culture_collection">culture_collection</option> | |
| 7474 <option value="dataclass">dataclass</option> | |
| 7475 <option value="description">description</option> | |
| 7476 <option value="dev_stage">dev_stage</option> | |
| 7477 <option value="ecotype">ecotype</option> | |
| 7478 <option value="environmental_sample">environmental_sample</option> | |
| 7479 <option value="first_public">first_public</option> | |
| 7480 <option value="germline">germline</option> | |
| 7481 <option value="host">host</option> | |
| 7482 <option value="identified_by">identified_by</option> | |
| 7483 <option value="isolate">isolate</option> | |
| 7484 <option value="isolation_source">isolation_source</option> | |
| 7485 <option value="keywords">keywords</option> | |
| 7486 <option value="lab_host">lab_host</option> | |
| 7487 <option value="last_updated">last_updated</option> | |
| 7488 <option value="location">location</option> | |
| 7489 <option value="mating_type">mating_type</option> | |
| 7490 <option value="mol_type">mol_type</option> | |
| 7491 <option value="organelle">organelle</option> | |
| 7492 <option value="serotype">serotype</option> | |
| 7493 <option value="serovar">serovar</option> | |
| 7494 <option value="sex">sex</option> | |
| 7495 <option value="submitted_sex">submitted_sex</option> | |
| 7496 <option value="specimen_voucher">specimen_voucher</option> | |
| 7497 <option value="strain">strain</option> | |
| 7498 <option value="sub_species">sub_species</option> | |
| 7499 <option value="sub_strain">sub_strain</option> | |
| 7500 <option value="tax_division">tax_division</option> | |
| 7501 <option value="tissue_lib">tissue_lib</option> | |
| 7502 <option value="tissue_type">tissue_type</option> | |
| 7503 <option value="topology">topology</option> | |
| 7504 <option value="variety">variety</option> | |
| 7505 <option value="tax_id">tax_id</option> | |
| 7506 <option value="scientific_name">scientific_name</option> | |
| 7507 <option value="altitude">altitude</option> | |
| 7508 <option value="haplotype">haplotype</option> | |
| 7509 <option value="plasmid">plasmid</option> | |
| 7510 <option value="study_accession">study_accession</option> | |
| 7511 <option value="sequence_md5">sequence_md5</option> | |
| 7512 </param> | |
| 7513 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 7514 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 7515 <option value="last_updated">date when last updated</option> | |
| 7516 <option value="sequence_md5"></option> | |
| 7517 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 7518 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 7519 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 7520 <option value="keywords">keywords associated with sequence</option> | |
| 7521 <option value="collected_by">name of the person who collected the specimen</option> | |
| 7522 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 7523 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 7524 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 7525 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 7526 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 7527 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 7528 <option value="tax_division">taxonomic division</option> | |
| 7529 <option value="collection_date">date that the specimen was collected</option> | |
| 7530 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 7531 <option value="altitude">Altitude (m)</option> | |
| 7532 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 7533 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 7534 <option value="location">geographic location of isolation of the sample</option> | |
| 7535 <option value="study_accession">study accession number</option> | |
| 7536 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 7537 <option value="description">brief sequence description</option> | |
| 7538 <option value="accession">accession number</option> | |
| 7539 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 7540 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 7541 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 7542 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 7543 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 7544 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 7545 <option value="base_count">number of base pairs</option> | |
| 7546 <option value="topology">sequence topology: circular or linear</option> | |
| 7547 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 7548 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 7549 <option value="first_public">date when made public</option> | |
| 7550 <option value="strain">strain from which sample was obtained</option> | |
| 7551 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 7552 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 7553 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 7554 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 7555 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 7556 <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option> | |
| 7557 <option value="dataclass">sequence data class</option> | |
| 7558 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 7559 </param> | |
| 7560 </when> | |
| 7561 <when value="fasta"/> | |
| 7562 </conditional> | |
| 7563 </when> | |
| 7564 <when value="coding_update"> | |
| 7565 <repeat name="queries" title="Add a query"> | |
| 7566 <param name="combination_operation" type="select" label="Combination operation"> | |
| 7567 <option value="AND">AND</option> | |
| 7568 <option value="OR">OR</option> | |
| 7569 <option value="NOT">NOT</option> | |
| 7570 </param> | |
| 7571 <conditional name="filter_field"> | |
| 7572 <param name="field" type="select" label="Field to query"> | |
| 7573 <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option> | |
| 7574 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 7575 <option value="last_updated">date when last updated</option> | |
| 7576 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 7577 <option value="transl_except">a single codon translation that does not conform to genetic code</option> | |
| 7578 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 7579 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 7580 <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option> | |
| 7581 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 7582 <option value="pseudo_gene">indicates that this feature is a pseudogene</option> | |
| 7583 <option value="standard_name">accepted standard name for a feature</option> | |
| 7584 <option value="collected_by">name of the person who collected the specimen</option> | |
| 7585 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 7586 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 7587 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 7588 <option value="inference">a structured description of non-experimental evidence</option> | |
| 7589 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 7590 <option value="parent_accession">parent sequence accession number</option> | |
| 7591 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 7592 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 7593 <option value="sequence_md5"></option> | |
| 7594 <option value="tax_division">taxonomic division</option> | |
| 7595 <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 7596 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 7597 <option value="altitude">Altitude (m)</option> | |
| 7598 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 7599 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 7600 <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option> | |
| 7601 <option value="note">any comment or additional information</option> | |
| 7602 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 7603 <option value="location">geographic location of isolation of the sample</option> | |
| 7604 <option value="collection_date">date that the specimen was collected</option> | |
| 7605 <option value="allele">name of the allele for the given gene</option> | |
| 7606 <option value="protein_id">a stable protein identifier issued by INSDC</option> | |
| 7607 <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option> | |
| 7608 <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option> | |
| 7609 <option value="function">function attributed to a sequence</option> | |
| 7610 <option value="map">genomic map position of feature</option> | |
| 7611 <option value="product">name of the product associated with the feature</option> | |
| 7612 <option value="description">brief sequence description</option> | |
| 7613 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 7614 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 7615 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 7616 <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option> | |
| 7617 <option value="accession">accession number</option> | |
| 7618 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 7619 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 7620 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 7621 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 7622 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 7623 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 7624 <option value="base_count">number of base pairs</option> | |
| 7625 <option value="topology">sequence topology: circular or linear</option> | |
| 7626 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 7627 <option value="first_public">date when made public</option> | |
| 7628 <option value="strain">strain from which sample was obtained</option> | |
| 7629 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 7630 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 7631 <option value="pseudo">the feature is non-functional</option> | |
| 7632 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 7633 <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option> | |
| 7634 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 7635 <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option> | |
| 7636 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 7637 <option value="keywords">keywords associated with sequence</option> | |
| 7638 <option value="dataclass">sequence data class</option> | |
| 7639 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 7640 <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option> | |
| 7641 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 7642 </param> | |
| 7643 <when value="operon"> | |
| 7644 <param name="operation" type="select" label="Operator"> | |
| 7645 <option value="equal">equal</option> | |
| 7646 <option value="different">different</option> | |
| 7647 </param> | |
| 7648 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7649 </when> | |
| 7650 <when value="mol_type"> | |
| 7651 <param name="operation" type="select" label="Operator"> | |
| 7652 <option value="equal">equal</option> | |
| 7653 <option value="different">different</option> | |
| 7654 </param> | |
| 7655 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7656 </when> | |
| 7657 <when value="last_updated"> | |
| 7658 <param name="operation" type="select" label="Operator"> | |
| 7659 <option value="equal">equal</option> | |
| 7660 <option value="different">different</option> | |
| 7661 <option value="lower">lower</option> | |
| 7662 <option value="equal or lower">equal or lower</option> | |
| 7663 <option value="higher">higher</option> | |
| 7664 <option value="equal or higher">equal or higher</option> | |
| 7665 </param> | |
| 7666 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 7667 </when> | |
| 7668 <when value="lab_host"> | |
| 7669 <param name="operation" type="select" label="Operator"> | |
| 7670 <option value="equal">equal</option> | |
| 7671 <option value="different">different</option> | |
| 7672 </param> | |
| 7673 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7674 </when> | |
| 7675 <when value="transl_except"> | |
| 7676 <param name="operation" type="select" label="Operator"> | |
| 7677 <option value="equal">equal</option> | |
| 7678 <option value="different">different</option> | |
| 7679 </param> | |
| 7680 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7681 </when> | |
| 7682 <when value="haplotype"> | |
| 7683 <param name="operation" type="select" label="Operator"> | |
| 7684 <option value="equal">equal</option> | |
| 7685 <option value="different">different</option> | |
| 7686 </param> | |
| 7687 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7688 </when> | |
| 7689 <when value="serotype"> | |
| 7690 <param name="operation" type="select" label="Operator"> | |
| 7691 <option value="equal">equal</option> | |
| 7692 <option value="different">different</option> | |
| 7693 </param> | |
| 7694 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7695 </when> | |
| 7696 <when value="trans_splicing"> | |
| 7697 <param name="operation" type="select" label="Operator"> | |
| 7698 <option value="equal">equal</option> | |
| 7699 </param> | |
| 7700 <param name="value" type="select" label="Value"> | |
| 7701 <option value="yes">yes</option> | |
| 7702 <option value="true">true</option> | |
| 7703 <option value="no">no</option> | |
| 7704 <option value="false">false</option> | |
| 7705 </param> | |
| 7706 </when> | |
| 7707 <when value="sex"> | |
| 7708 <param name="operation" type="select" label="Operator"> | |
| 7709 <option value="equal">equal</option> | |
| 7710 <option value="different">different</option> | |
| 7711 </param> | |
| 7712 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7713 </when> | |
| 7714 <when value="pseudo_gene"> | |
| 7715 <param name="operation" type="select" label="Operator"> | |
| 7716 <option value="equal">equal</option> | |
| 7717 <option value="different">different</option> | |
| 7718 </param> | |
| 7719 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7720 </when> | |
| 7721 <when value="standard_name"> | |
| 7722 <param name="operation" type="select" label="Operator"> | |
| 7723 <option value="equal">equal</option> | |
| 7724 <option value="different">different</option> | |
| 7725 </param> | |
| 7726 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7727 </when> | |
| 7728 <when value="collected_by"> | |
| 7729 <param name="operation" type="select" label="Operator"> | |
| 7730 <option value="equal">equal</option> | |
| 7731 <option value="different">different</option> | |
| 7732 </param> | |
| 7733 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7734 </when> | |
| 7735 <when value="germline"> | |
| 7736 <param name="operation" type="select" label="Operator"> | |
| 7737 <option value="equal">equal</option> | |
| 7738 </param> | |
| 7739 <param name="value" type="select" label="Value"> | |
| 7740 <option value="yes">yes</option> | |
| 7741 <option value="true">true</option> | |
| 7742 <option value="no">no</option> | |
| 7743 <option value="false">false</option> | |
| 7744 </param> | |
| 7745 </when> | |
| 7746 <when value="cell_type"> | |
| 7747 <param name="operation" type="select" label="Operator"> | |
| 7748 <option value="equal">equal</option> | |
| 7749 <option value="different">different</option> | |
| 7750 </param> | |
| 7751 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7752 </when> | |
| 7753 <when value="host"> | |
| 7754 <param name="operation" type="select" label="Operator"> | |
| 7755 <option value="equal">equal</option> | |
| 7756 <option value="different">different</option> | |
| 7757 </param> | |
| 7758 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7759 </when> | |
| 7760 <when value="inference"> | |
| 7761 <param name="operation" type="select" label="Operator"> | |
| 7762 <option value="equal">equal</option> | |
| 7763 <option value="different">different</option> | |
| 7764 </param> | |
| 7765 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7766 </when> | |
| 7767 <when value="bio_material"> | |
| 7768 <param name="operation" type="select" label="Operator"> | |
| 7769 <option value="equal">equal</option> | |
| 7770 <option value="different">different</option> | |
| 7771 </param> | |
| 7772 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7773 </when> | |
| 7774 <when value="parent_accession"> | |
| 7775 <param name="operation" type="select" label="Operator"> | |
| 7776 <option value="equal">equal</option> | |
| 7777 <option value="different">different</option> | |
| 7778 </param> | |
| 7779 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7780 </when> | |
| 7781 <when value="identified_by"> | |
| 7782 <param name="operation" type="select" label="Operator"> | |
| 7783 <option value="equal">equal</option> | |
| 7784 <option value="different">different</option> | |
| 7785 </param> | |
| 7786 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7787 </when> | |
| 7788 <when value="locus_tag"> | |
| 7789 <param name="operation" type="select" label="Operator"> | |
| 7790 <option value="equal">equal</option> | |
| 7791 <option value="different">different</option> | |
| 7792 </param> | |
| 7793 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7794 </when> | |
| 7795 <when value="sequence_md5"> | |
| 7796 <param name="operation" type="select" label="Operator"> | |
| 7797 <option value="equal">equal</option> | |
| 7798 <option value="different">different</option> | |
| 7799 </param> | |
| 7800 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7801 </when> | |
| 7802 <when value="tax_division"> | |
| 7803 <param name="operation" type="select" label="Operator"> | |
| 7804 <option value="equal">equal</option> | |
| 7805 <option value="different">different</option> | |
| 7806 </param> | |
| 7807 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7808 </when> | |
| 7809 <when value="old_locus_tag"> | |
| 7810 <param name="operation" type="select" label="Operator"> | |
| 7811 <option value="equal">equal</option> | |
| 7812 <option value="different">different</option> | |
| 7813 </param> | |
| 7814 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7815 </when> | |
| 7816 <when value="specimen_voucher"> | |
| 7817 <param name="operation" type="select" label="Operator"> | |
| 7818 <option value="equal">equal</option> | |
| 7819 <option value="different">different</option> | |
| 7820 </param> | |
| 7821 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7822 </when> | |
| 7823 <when value="altitude"> | |
| 7824 <param name="operation" type="select" label="Operator"> | |
| 7825 <option value="equal">equal</option> | |
| 7826 <option value="different">different</option> | |
| 7827 <option value="lower">lower</option> | |
| 7828 <option value="equal or lower">equal or lower</option> | |
| 7829 <option value="higher">higher</option> | |
| 7830 <option value="equal or higher">equal or higher</option> | |
| 7831 </param> | |
| 7832 <param name="value" type="float" value="" label="Any integer"/> | |
| 7833 </when> | |
| 7834 <when value="dev_stage"> | |
| 7835 <param name="operation" type="select" label="Operator"> | |
| 7836 <option value="equal">equal</option> | |
| 7837 <option value="different">different</option> | |
| 7838 </param> | |
| 7839 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7840 </when> | |
| 7841 <when value="isolate"> | |
| 7842 <param name="operation" type="select" label="Operator"> | |
| 7843 <option value="equal">equal</option> | |
| 7844 <option value="different">different</option> | |
| 7845 </param> | |
| 7846 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7847 </when> | |
| 7848 <when value="ec_number"> | |
| 7849 <param name="operation" type="select" label="Operator"> | |
| 7850 <option value="equal">equal</option> | |
| 7851 <option value="different">different</option> | |
| 7852 </param> | |
| 7853 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7854 </when> | |
| 7855 <when value="note"> | |
| 7856 <param name="operation" type="select" label="Operator"> | |
| 7857 <option value="equal">equal</option> | |
| 7858 <option value="different">different</option> | |
| 7859 </param> | |
| 7860 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7861 </when> | |
| 7862 <when value="experiment"> | |
| 7863 <param name="operation" type="select" label="Operator"> | |
| 7864 <option value="equal">equal</option> | |
| 7865 <option value="different">different</option> | |
| 7866 </param> | |
| 7867 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7868 </when> | |
| 7869 <when value="location"> | |
| 7870 <conditional name="op"> | |
| 7871 <param name="operation" type="select" label="Operation"> | |
| 7872 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 7873 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 7874 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 7875 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 7876 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 7877 <option value="geo_point">An exact lat/lon position</option> | |
| 7878 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 7879 </param> | |
| 7880 <when value="geo_box2"> | |
| 7881 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 7882 </when> | |
| 7883 <when value="geo_box1"> | |
| 7884 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 7885 </when> | |
| 7886 <when value="geo_circ"> | |
| 7887 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 7888 </when> | |
| 7889 <when value="geo_lat"> | |
| 7890 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 7891 </when> | |
| 7892 <when value="geo_south"> | |
| 7893 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 7894 </when> | |
| 7895 <when value="geo_point"> | |
| 7896 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 7897 </when> | |
| 7898 <when value="geo_north"> | |
| 7899 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 7900 </when> | |
| 7901 </conditional> | |
| 7902 </when> | |
| 7903 <when value="collection_date"> | |
| 7904 <param name="operation" type="select" label="Operator"> | |
| 7905 <option value="equal">equal</option> | |
| 7906 <option value="different">different</option> | |
| 7907 <option value="lower">lower</option> | |
| 7908 <option value="equal or lower">equal or lower</option> | |
| 7909 <option value="higher">higher</option> | |
| 7910 <option value="equal or higher">equal or higher</option> | |
| 7911 </param> | |
| 7912 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 7913 </when> | |
| 7914 <when value="allele"> | |
| 7915 <param name="operation" type="select" label="Operator"> | |
| 7916 <option value="equal">equal</option> | |
| 7917 <option value="different">different</option> | |
| 7918 </param> | |
| 7919 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7920 </when> | |
| 7921 <when value="protein_id"> | |
| 7922 <param name="operation" type="select" label="Operator"> | |
| 7923 <option value="equal">equal</option> | |
| 7924 <option value="different">different</option> | |
| 7925 </param> | |
| 7926 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7927 </when> | |
| 7928 <when value="partial"> | |
| 7929 <param name="operation" type="select" label="Operator"> | |
| 7930 <option value="equal">equal</option> | |
| 7931 </param> | |
| 7932 <param name="value" type="select" label="Value"> | |
| 7933 <option value="yes">yes</option> | |
| 7934 <option value="true">true</option> | |
| 7935 <option value="no">no</option> | |
| 7936 <option value="false">false</option> | |
| 7937 </param> | |
| 7938 </when> | |
| 7939 <when value="artificial_location"> | |
| 7940 <param name="operation" type="select" label="Operator"> | |
| 7941 <option value="equal">equal</option> | |
| 7942 <option value="different">different</option> | |
| 7943 </param> | |
| 7944 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 7945 </when> | |
| 7946 <when value="function"> | |
| 7947 <param name="operation" type="select" label="Operator"> | |
| 7948 <option value="equal">equal</option> | |
| 7949 <option value="different">different</option> | |
| 7950 </param> | |
| 7951 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7952 </when> | |
| 7953 <when value="map"> | |
| 7954 <param name="operation" type="select" label="Operator"> | |
| 7955 <option value="equal">equal</option> | |
| 7956 <option value="different">different</option> | |
| 7957 </param> | |
| 7958 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7959 </when> | |
| 7960 <when value="product"> | |
| 7961 <param name="operation" type="select" label="Operator"> | |
| 7962 <option value="equal">equal</option> | |
| 7963 <option value="different">different</option> | |
| 7964 </param> | |
| 7965 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7966 </when> | |
| 7967 <when value="description"> | |
| 7968 <param name="operation" type="select" label="Operator"> | |
| 7969 <option value="equal">equal</option> | |
| 7970 <option value="different">different</option> | |
| 7971 </param> | |
| 7972 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7973 </when> | |
| 7974 <when value="cell_line"> | |
| 7975 <param name="operation" type="select" label="Operator"> | |
| 7976 <option value="equal">equal</option> | |
| 7977 <option value="different">different</option> | |
| 7978 </param> | |
| 7979 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7980 </when> | |
| 7981 <when value="gene_synonym"> | |
| 7982 <param name="operation" type="select" label="Operator"> | |
| 7983 <option value="equal">equal</option> | |
| 7984 <option value="different">different</option> | |
| 7985 </param> | |
| 7986 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7987 </when> | |
| 7988 <when value="ecotype"> | |
| 7989 <param name="operation" type="select" label="Operator"> | |
| 7990 <option value="equal">equal</option> | |
| 7991 <option value="different">different</option> | |
| 7992 </param> | |
| 7993 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 7994 </when> | |
| 7995 <when value="exception"> | |
| 7996 <param name="operation" type="select" label="Operator"> | |
| 7997 <option value="equal">equal</option> | |
| 7998 <option value="different">different</option> | |
| 7999 </param> | |
| 8000 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8001 </when> | |
| 8002 <when value="accession"> | |
| 8003 <param name="operation" type="select" label="Operator"> | |
| 8004 <option value="equal">equal</option> | |
| 8005 <option value="different">different</option> | |
| 8006 </param> | |
| 8007 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8008 </when> | |
| 8009 <when value="isolation_source"> | |
| 8010 <param name="operation" type="select" label="Operator"> | |
| 8011 <option value="equal">equal</option> | |
| 8012 <option value="different">different</option> | |
| 8013 </param> | |
| 8014 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8015 </when> | |
| 8016 <when value="mating_type"> | |
| 8017 <param name="operation" type="select" label="Operator"> | |
| 8018 <option value="equal">equal</option> | |
| 8019 <option value="different">different</option> | |
| 8020 </param> | |
| 8021 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8022 </when> | |
| 8023 <when value="tissue_type"> | |
| 8024 <param name="operation" type="select" label="Operator"> | |
| 8025 <option value="equal">equal</option> | |
| 8026 <option value="different">different</option> | |
| 8027 </param> | |
| 8028 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8029 </when> | |
| 8030 <when value="sub_strain"> | |
| 8031 <param name="operation" type="select" label="Operator"> | |
| 8032 <option value="equal">equal</option> | |
| 8033 <option value="different">different</option> | |
| 8034 </param> | |
| 8035 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8036 </when> | |
| 8037 <when value="tissue_lib"> | |
| 8038 <param name="operation" type="select" label="Operator"> | |
| 8039 <option value="equal">equal</option> | |
| 8040 <option value="different">different</option> | |
| 8041 </param> | |
| 8042 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8043 </when> | |
| 8044 <when value="cultivar"> | |
| 8045 <param name="operation" type="select" label="Operator"> | |
| 8046 <option value="equal">equal</option> | |
| 8047 <option value="different">different</option> | |
| 8048 </param> | |
| 8049 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8050 </when> | |
| 8051 <when value="base_count"> | |
| 8052 <param name="operation" type="select" label="Operator"> | |
| 8053 <option value="equal">equal</option> | |
| 8054 <option value="different">different</option> | |
| 8055 <option value="lower">lower</option> | |
| 8056 <option value="equal or lower">equal or lower</option> | |
| 8057 <option value="higher">higher</option> | |
| 8058 <option value="equal or higher">equal or higher</option> | |
| 8059 </param> | |
| 8060 <param name="value" type="float" value="" label="Any integer"/> | |
| 8061 </when> | |
| 8062 <when value="topology"> | |
| 8063 <param name="operation" type="select" label="Operator"> | |
| 8064 <option value="equal">equal</option> | |
| 8065 <option value="different">different</option> | |
| 8066 </param> | |
| 8067 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 8068 </when> | |
| 8069 <when value="sub_species"> | |
| 8070 <param name="operation" type="select" label="Operator"> | |
| 8071 <option value="equal">equal</option> | |
| 8072 <option value="different">different</option> | |
| 8073 </param> | |
| 8074 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8075 </when> | |
| 8076 <when value="first_public"> | |
| 8077 <param name="operation" type="select" label="Operator"> | |
| 8078 <option value="equal">equal</option> | |
| 8079 <option value="different">different</option> | |
| 8080 <option value="lower">lower</option> | |
| 8081 <option value="equal or lower">equal or lower</option> | |
| 8082 <option value="higher">higher</option> | |
| 8083 <option value="equal or higher">equal or higher</option> | |
| 8084 </param> | |
| 8085 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 8086 </when> | |
| 8087 <when value="strain"> | |
| 8088 <param name="operation" type="select" label="Operator"> | |
| 8089 <option value="equal">equal</option> | |
| 8090 <option value="different">different</option> | |
| 8091 </param> | |
| 8092 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8093 </when> | |
| 8094 <when value="country"> | |
| 8095 <param name="operation" type="select" label="Operator"> | |
| 8096 <option value="equal">equal</option> | |
| 8097 <option value="different">different</option> | |
| 8098 </param> | |
| 8099 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8100 </when> | |
| 8101 <when value="variety"> | |
| 8102 <param name="operation" type="select" label="Operator"> | |
| 8103 <option value="equal">equal</option> | |
| 8104 <option value="different">different</option> | |
| 8105 </param> | |
| 8106 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8107 </when> | |
| 8108 <when value="pseudo"> | |
| 8109 <param name="operation" type="select" label="Operator"> | |
| 8110 <option value="equal">equal</option> | |
| 8111 </param> | |
| 8112 <param name="value" type="select" label="Value"> | |
| 8113 <option value="yes">yes</option> | |
| 8114 <option value="true">true</option> | |
| 8115 <option value="no">no</option> | |
| 8116 <option value="false">false</option> | |
| 8117 </param> | |
| 8118 </when> | |
| 8119 <when value="environmental_sample"> | |
| 8120 <param name="operation" type="select" label="Operator"> | |
| 8121 <option value="equal">equal</option> | |
| 8122 </param> | |
| 8123 <param name="value" type="select" label="Value"> | |
| 8124 <option value="yes">yes</option> | |
| 8125 <option value="true">true</option> | |
| 8126 <option value="no">no</option> | |
| 8127 <option value="false">false</option> | |
| 8128 </param> | |
| 8129 </when> | |
| 8130 <when value="transl_table"> | |
| 8131 <param name="operation" type="select" label="Operator"> | |
| 8132 <option value="equal">equal</option> | |
| 8133 <option value="different">different</option> | |
| 8134 </param> | |
| 8135 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 8136 </when> | |
| 8137 <when value="organelle"> | |
| 8138 <param name="operation" type="select" label="Operator"> | |
| 8139 <option value="equal">equal</option> | |
| 8140 <option value="different">different</option> | |
| 8141 </param> | |
| 8142 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 8143 </when> | |
| 8144 <when value="ribosomal_slippage"> | |
| 8145 <param name="operation" type="select" label="Operator"> | |
| 8146 <option value="equal">equal</option> | |
| 8147 </param> | |
| 8148 <param name="value" type="select" label="Value"> | |
| 8149 <option value="yes">yes</option> | |
| 8150 <option value="true">true</option> | |
| 8151 <option value="no">no</option> | |
| 8152 <option value="false">false</option> | |
| 8153 </param> | |
| 8154 </when> | |
| 8155 <when value="serovar"> | |
| 8156 <param name="operation" type="select" label="Operator"> | |
| 8157 <option value="equal">equal</option> | |
| 8158 <option value="different">different</option> | |
| 8159 </param> | |
| 8160 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8161 </when> | |
| 8162 <when value="keywords"> | |
| 8163 <param name="operation" type="select" label="Operator"> | |
| 8164 <option value="equal">equal</option> | |
| 8165 <option value="different">different</option> | |
| 8166 </param> | |
| 8167 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8168 </when> | |
| 8169 <when value="dataclass"> | |
| 8170 <param name="operation" type="select" label="Operator"> | |
| 8171 <option value="equal">equal</option> | |
| 8172 <option value="different">different</option> | |
| 8173 </param> | |
| 8174 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 8175 </when> | |
| 8176 <when value="gene"> | |
| 8177 <param name="operation" type="select" label="Operator"> | |
| 8178 <option value="equal">equal</option> | |
| 8179 <option value="different">different</option> | |
| 8180 </param> | |
| 8181 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8182 </when> | |
| 8183 <when value="codon_start"> | |
| 8184 <param name="operation" type="select" label="Operator"> | |
| 8185 <option value="equal">equal</option> | |
| 8186 <option value="different">different</option> | |
| 8187 </param> | |
| 8188 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 8189 </when> | |
| 8190 <when value="culture_collection"> | |
| 8191 <param name="operation" type="select" label="Operator"> | |
| 8192 <option value="equal">equal</option> | |
| 8193 <option value="different">different</option> | |
| 8194 </param> | |
| 8195 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8196 </when> | |
| 8197 </conditional> | |
| 8198 </repeat> | |
| 8199 <conditional name="display_opt"> | |
| 8200 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 8201 <expand macro="display_options"/> | |
| 8202 </param> | |
| 8203 <when value="xml"> | |
| 8204 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8205 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8206 </when> | |
| 8207 <when value="text"> | |
| 8208 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8209 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8210 </when> | |
| 8211 <when value="fastq"/> | |
| 8212 <when value="html"> | |
| 8213 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8214 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8215 </when> | |
| 8216 <when value="report"> | |
| 8217 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8218 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8219 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 8220 <option value="accession">accession</option> | |
| 8221 <option value="base_count">base_count</option> | |
| 8222 <option value="bio_material">bio_material</option> | |
| 8223 <option value="cell_line">cell_line</option> | |
| 8224 <option value="cell_type">cell_type</option> | |
| 8225 <option value="collected_by">collected_by</option> | |
| 8226 <option value="collection_date">collection_date</option> | |
| 8227 <option value="country">country</option> | |
| 8228 <option value="cultivar">cultivar</option> | |
| 8229 <option value="culture_collection">culture_collection</option> | |
| 8230 <option value="dataclass">dataclass</option> | |
| 8231 <option value="description">description</option> | |
| 8232 <option value="dev_stage">dev_stage</option> | |
| 8233 <option value="ecotype">ecotype</option> | |
| 8234 <option value="environmental_sample">environmental_sample</option> | |
| 8235 <option value="first_public">first_public</option> | |
| 8236 <option value="germline">germline</option> | |
| 8237 <option value="host">host</option> | |
| 8238 <option value="identified_by">identified_by</option> | |
| 8239 <option value="isolate">isolate</option> | |
| 8240 <option value="isolation_source">isolation_source</option> | |
| 8241 <option value="keywords">keywords</option> | |
| 8242 <option value="lab_host">lab_host</option> | |
| 8243 <option value="last_updated">last_updated</option> | |
| 8244 <option value="location">location</option> | |
| 8245 <option value="mating_type">mating_type</option> | |
| 8246 <option value="mol_type">mol_type</option> | |
| 8247 <option value="organelle">organelle</option> | |
| 8248 <option value="serotype">serotype</option> | |
| 8249 <option value="serovar">serovar</option> | |
| 8250 <option value="sex">sex</option> | |
| 8251 <option value="submitted_sex">submitted_sex</option> | |
| 8252 <option value="specimen_voucher">specimen_voucher</option> | |
| 8253 <option value="strain">strain</option> | |
| 8254 <option value="sub_species">sub_species</option> | |
| 8255 <option value="sub_strain">sub_strain</option> | |
| 8256 <option value="tax_division">tax_division</option> | |
| 8257 <option value="tissue_lib">tissue_lib</option> | |
| 8258 <option value="tissue_type">tissue_type</option> | |
| 8259 <option value="variety">variety</option> | |
| 8260 <option value="allele">allele</option> | |
| 8261 <option value="artificial_location">artificial_location</option> | |
| 8262 <option value="codon_start">codon_start</option> | |
| 8263 <option value="ec_number">ec_number</option> | |
| 8264 <option value="exception">exception</option> | |
| 8265 <option value="experiment">experiment</option> | |
| 8266 <option value="function">function</option> | |
| 8267 <option value="topology">topology</option> | |
| 8268 <option value="gene">gene</option> | |
| 8269 <option value="gene_synonym">gene_synonym</option> | |
| 8270 <option value="inference">inference</option> | |
| 8271 <option value="locus_tag">locus_tag</option> | |
| 8272 <option value="map">map</option> | |
| 8273 <option value="note">note</option> | |
| 8274 <option value="old_locus_tag">old_locus_tag</option> | |
| 8275 <option value="operon">operon</option> | |
| 8276 <option value="partial">partial</option> | |
| 8277 <option value="product">product</option> | |
| 8278 <option value="protein_id">protein_id</option> | |
| 8279 <option value="pseudo">pseudo</option> | |
| 8280 <option value="pseudo_gene">pseudo_gene</option> | |
| 8281 <option value="ribosomal_slippage">ribosomal_slippage</option> | |
| 8282 <option value="standard_name">standard_name</option> | |
| 8283 <option value="trans_splicing">trans_splicing</option> | |
| 8284 <option value="transl_except">transl_except</option> | |
| 8285 <option value="transl_table">transl_table</option> | |
| 8286 <option value="tax_id">tax_id</option> | |
| 8287 <option value="scientific_name">scientific_name</option> | |
| 8288 <option value="parent_accession">parent_accession</option> | |
| 8289 <option value="altitude">altitude</option> | |
| 8290 <option value="haplotype">haplotype</option> | |
| 8291 <option value="sequence_md5">sequence_md5</option> | |
| 8292 </param> | |
| 8293 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 8294 <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option> | |
| 8295 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 8296 <option value="last_updated">date when last updated</option> | |
| 8297 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 8298 <option value="transl_except">a single codon translation that does not conform to genetic code</option> | |
| 8299 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 8300 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 8301 <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option> | |
| 8302 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 8303 <option value="pseudo_gene">indicates that this feature is a pseudogene</option> | |
| 8304 <option value="standard_name">accepted standard name for a feature</option> | |
| 8305 <option value="collected_by">name of the person who collected the specimen</option> | |
| 8306 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 8307 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 8308 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 8309 <option value="inference">a structured description of non-experimental evidence</option> | |
| 8310 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 8311 <option value="parent_accession">parent sequence accession number</option> | |
| 8312 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 8313 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 8314 <option value="sequence_md5"></option> | |
| 8315 <option value="tax_division">taxonomic division</option> | |
| 8316 <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 8317 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 8318 <option value="altitude">Altitude (m)</option> | |
| 8319 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 8320 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 8321 <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option> | |
| 8322 <option value="note">any comment or additional information</option> | |
| 8323 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 8324 <option value="location">geographic location of isolation of the sample</option> | |
| 8325 <option value="collection_date">date that the specimen was collected</option> | |
| 8326 <option value="allele">name of the allele for the given gene</option> | |
| 8327 <option value="protein_id">a stable protein identifier issued by INSDC</option> | |
| 8328 <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option> | |
| 8329 <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option> | |
| 8330 <option value="function">function attributed to a sequence</option> | |
| 8331 <option value="map">genomic map position of feature</option> | |
| 8332 <option value="product">name of the product associated with the feature</option> | |
| 8333 <option value="description">brief sequence description</option> | |
| 8334 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 8335 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 8336 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 8337 <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option> | |
| 8338 <option value="accession">accession number</option> | |
| 8339 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 8340 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 8341 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 8342 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 8343 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 8344 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 8345 <option value="base_count">number of base pairs</option> | |
| 8346 <option value="topology">sequence topology: circular or linear</option> | |
| 8347 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 8348 <option value="first_public">date when made public</option> | |
| 8349 <option value="strain">strain from which sample was obtained</option> | |
| 8350 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 8351 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 8352 <option value="pseudo">the feature is non-functional</option> | |
| 8353 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 8354 <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option> | |
| 8355 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 8356 <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option> | |
| 8357 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 8358 <option value="keywords">keywords associated with sequence</option> | |
| 8359 <option value="dataclass">sequence data class</option> | |
| 8360 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 8361 <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option> | |
| 8362 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 8363 </param> | |
| 8364 </when> | |
| 8365 <when value="fasta"/> | |
| 8366 </conditional> | |
| 8367 </when> | |
| 8368 <when value="tsa_set"> | |
| 8369 <repeat name="queries" title="Add a query"> | |
| 8370 <param name="combination_operation" type="select" label="Combination operation"> | |
| 8371 <option value="AND">AND</option> | |
| 8372 <option value="OR">OR</option> | |
| 8373 <option value="NOT">NOT</option> | |
| 8374 </param> | |
| 8375 <conditional name="filter_field"> | |
| 8376 <param name="field" type="select" label="Field to query"> | |
| 8377 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 8378 <option value="last_updated">date when last updated</option> | |
| 8379 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 8380 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 8381 <option value="accession">accession number</option> | |
| 8382 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 8383 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 8384 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 8385 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 8386 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 8387 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 8388 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 8389 <option value="tax_division">taxonomic division</option> | |
| 8390 <option value="collection_date">date that the specimen was collected</option> | |
| 8391 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 8392 <option value="altitude">Altitude (m)</option> | |
| 8393 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 8394 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 8395 <option value="location">geographic location of isolation of the sample</option> | |
| 8396 <option value="study_accession">study accession number</option> | |
| 8397 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 8398 <option value="description">brief sequence description</option> | |
| 8399 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 8400 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 8401 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 8402 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 8403 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 8404 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 8405 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 8406 <option value="collected_by">name of the person who collected the specimen</option> | |
| 8407 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 8408 <option value="first_public">date when made public</option> | |
| 8409 <option value="strain">strain from which sample was obtained</option> | |
| 8410 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 8411 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 8412 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 8413 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 8414 <option value="keywords">keywords associated with sequence</option> | |
| 8415 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 8416 </param> | |
| 8417 <when value="mol_type"> | |
| 8418 <param name="operation" type="select" label="Operator"> | |
| 8419 <option value="equal">equal</option> | |
| 8420 <option value="different">different</option> | |
| 8421 </param> | |
| 8422 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 8423 </when> | |
| 8424 <when value="last_updated"> | |
| 8425 <param name="operation" type="select" label="Operator"> | |
| 8426 <option value="equal">equal</option> | |
| 8427 <option value="different">different</option> | |
| 8428 <option value="lower">lower</option> | |
| 8429 <option value="equal or lower">equal or lower</option> | |
| 8430 <option value="higher">higher</option> | |
| 8431 <option value="equal or higher">equal or higher</option> | |
| 8432 </param> | |
| 8433 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 8434 </when> | |
| 8435 <when value="lab_host"> | |
| 8436 <param name="operation" type="select" label="Operator"> | |
| 8437 <option value="equal">equal</option> | |
| 8438 <option value="different">different</option> | |
| 8439 </param> | |
| 8440 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8441 </when> | |
| 8442 <when value="haplotype"> | |
| 8443 <param name="operation" type="select" label="Operator"> | |
| 8444 <option value="equal">equal</option> | |
| 8445 <option value="different">different</option> | |
| 8446 </param> | |
| 8447 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8448 </when> | |
| 8449 <when value="accession"> | |
| 8450 <param name="operation" type="select" label="Operator"> | |
| 8451 <option value="equal">equal</option> | |
| 8452 <option value="different">different</option> | |
| 8453 </param> | |
| 8454 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8455 </when> | |
| 8456 <when value="sex"> | |
| 8457 <param name="operation" type="select" label="Operator"> | |
| 8458 <option value="equal">equal</option> | |
| 8459 <option value="different">different</option> | |
| 8460 </param> | |
| 8461 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 8462 </when> | |
| 8463 <when value="cell_line"> | |
| 8464 <param name="operation" type="select" label="Operator"> | |
| 8465 <option value="equal">equal</option> | |
| 8466 <option value="different">different</option> | |
| 8467 </param> | |
| 8468 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8469 </when> | |
| 8470 <when value="host"> | |
| 8471 <param name="operation" type="select" label="Operator"> | |
| 8472 <option value="equal">equal</option> | |
| 8473 <option value="different">different</option> | |
| 8474 </param> | |
| 8475 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8476 </when> | |
| 8477 <when value="ecotype"> | |
| 8478 <param name="operation" type="select" label="Operator"> | |
| 8479 <option value="equal">equal</option> | |
| 8480 <option value="different">different</option> | |
| 8481 </param> | |
| 8482 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8483 </when> | |
| 8484 <when value="bio_material"> | |
| 8485 <param name="operation" type="select" label="Operator"> | |
| 8486 <option value="equal">equal</option> | |
| 8487 <option value="different">different</option> | |
| 8488 </param> | |
| 8489 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8490 </when> | |
| 8491 <when value="identified_by"> | |
| 8492 <param name="operation" type="select" label="Operator"> | |
| 8493 <option value="equal">equal</option> | |
| 8494 <option value="different">different</option> | |
| 8495 </param> | |
| 8496 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8497 </when> | |
| 8498 <when value="cell_type"> | |
| 8499 <param name="operation" type="select" label="Operator"> | |
| 8500 <option value="equal">equal</option> | |
| 8501 <option value="different">different</option> | |
| 8502 </param> | |
| 8503 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8504 </when> | |
| 8505 <when value="tax_division"> | |
| 8506 <param name="operation" type="select" label="Operator"> | |
| 8507 <option value="equal">equal</option> | |
| 8508 <option value="different">different</option> | |
| 8509 </param> | |
| 8510 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 8511 </when> | |
| 8512 <when value="collection_date"> | |
| 8513 <param name="operation" type="select" label="Operator"> | |
| 8514 <option value="equal">equal</option> | |
| 8515 <option value="different">different</option> | |
| 8516 <option value="lower">lower</option> | |
| 8517 <option value="equal or lower">equal or lower</option> | |
| 8518 <option value="higher">higher</option> | |
| 8519 <option value="equal or higher">equal or higher</option> | |
| 8520 </param> | |
| 8521 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 8522 </when> | |
| 8523 <when value="specimen_voucher"> | |
| 8524 <param name="operation" type="select" label="Operator"> | |
| 8525 <option value="equal">equal</option> | |
| 8526 <option value="different">different</option> | |
| 8527 </param> | |
| 8528 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8529 </when> | |
| 8530 <when value="altitude"> | |
| 8531 <param name="operation" type="select" label="Operator"> | |
| 8532 <option value="equal">equal</option> | |
| 8533 <option value="different">different</option> | |
| 8534 <option value="lower">lower</option> | |
| 8535 <option value="equal or lower">equal or lower</option> | |
| 8536 <option value="higher">higher</option> | |
| 8537 <option value="equal or higher">equal or higher</option> | |
| 8538 </param> | |
| 8539 <param name="value" type="float" value="" label="Any integer"/> | |
| 8540 </when> | |
| 8541 <when value="dev_stage"> | |
| 8542 <param name="operation" type="select" label="Operator"> | |
| 8543 <option value="equal">equal</option> | |
| 8544 <option value="different">different</option> | |
| 8545 </param> | |
| 8546 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8547 </when> | |
| 8548 <when value="isolate"> | |
| 8549 <param name="operation" type="select" label="Operator"> | |
| 8550 <option value="equal">equal</option> | |
| 8551 <option value="different">different</option> | |
| 8552 </param> | |
| 8553 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8554 </when> | |
| 8555 <when value="location"> | |
| 8556 <conditional name="op"> | |
| 8557 <param name="operation" type="select" label="Operation"> | |
| 8558 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 8559 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 8560 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 8561 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 8562 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 8563 <option value="geo_point">An exact lat/lon position</option> | |
| 8564 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 8565 </param> | |
| 8566 <when value="geo_box2"> | |
| 8567 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 8568 </when> | |
| 8569 <when value="geo_box1"> | |
| 8570 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 8571 </when> | |
| 8572 <when value="geo_circ"> | |
| 8573 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 8574 </when> | |
| 8575 <when value="geo_lat"> | |
| 8576 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 8577 </when> | |
| 8578 <when value="geo_south"> | |
| 8579 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 8580 </when> | |
| 8581 <when value="geo_point"> | |
| 8582 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 8583 </when> | |
| 8584 <when value="geo_north"> | |
| 8585 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 8586 </when> | |
| 8587 </conditional> | |
| 8588 </when> | |
| 8589 <when value="study_accession"> | |
| 8590 <param name="operation" type="select" label="Operator"> | |
| 8591 <option value="equal">equal</option> | |
| 8592 <option value="different">different</option> | |
| 8593 </param> | |
| 8594 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8595 </when> | |
| 8596 <when value="germline"> | |
| 8597 <param name="operation" type="select" label="Operator"> | |
| 8598 <option value="equal">equal</option> | |
| 8599 </param> | |
| 8600 <param name="value" type="select" label="Value"> | |
| 8601 <option value="yes">yes</option> | |
| 8602 <option value="true">true</option> | |
| 8603 <option value="no">no</option> | |
| 8604 <option value="false">false</option> | |
| 8605 </param> | |
| 8606 </when> | |
| 8607 <when value="description"> | |
| 8608 <param name="operation" type="select" label="Operator"> | |
| 8609 <option value="equal">equal</option> | |
| 8610 <option value="different">different</option> | |
| 8611 </param> | |
| 8612 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8613 </when> | |
| 8614 <when value="tissue_lib"> | |
| 8615 <param name="operation" type="select" label="Operator"> | |
| 8616 <option value="equal">equal</option> | |
| 8617 <option value="different">different</option> | |
| 8618 </param> | |
| 8619 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8620 </when> | |
| 8621 <when value="isolation_source"> | |
| 8622 <param name="operation" type="select" label="Operator"> | |
| 8623 <option value="equal">equal</option> | |
| 8624 <option value="different">different</option> | |
| 8625 </param> | |
| 8626 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8627 </when> | |
| 8628 <when value="mating_type"> | |
| 8629 <param name="operation" type="select" label="Operator"> | |
| 8630 <option value="equal">equal</option> | |
| 8631 <option value="different">different</option> | |
| 8632 </param> | |
| 8633 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8634 </when> | |
| 8635 <when value="serovar"> | |
| 8636 <param name="operation" type="select" label="Operator"> | |
| 8637 <option value="equal">equal</option> | |
| 8638 <option value="different">different</option> | |
| 8639 </param> | |
| 8640 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8641 </when> | |
| 8642 <when value="serotype"> | |
| 8643 <param name="operation" type="select" label="Operator"> | |
| 8644 <option value="equal">equal</option> | |
| 8645 <option value="different">different</option> | |
| 8646 </param> | |
| 8647 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8648 </when> | |
| 8649 <when value="sub_strain"> | |
| 8650 <param name="operation" type="select" label="Operator"> | |
| 8651 <option value="equal">equal</option> | |
| 8652 <option value="different">different</option> | |
| 8653 </param> | |
| 8654 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8655 </when> | |
| 8656 <when value="cultivar"> | |
| 8657 <param name="operation" type="select" label="Operator"> | |
| 8658 <option value="equal">equal</option> | |
| 8659 <option value="different">different</option> | |
| 8660 </param> | |
| 8661 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8662 </when> | |
| 8663 <when value="collected_by"> | |
| 8664 <param name="operation" type="select" label="Operator"> | |
| 8665 <option value="equal">equal</option> | |
| 8666 <option value="different">different</option> | |
| 8667 </param> | |
| 8668 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8669 </when> | |
| 8670 <when value="sub_species"> | |
| 8671 <param name="operation" type="select" label="Operator"> | |
| 8672 <option value="equal">equal</option> | |
| 8673 <option value="different">different</option> | |
| 8674 </param> | |
| 8675 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8676 </when> | |
| 8677 <when value="first_public"> | |
| 8678 <param name="operation" type="select" label="Operator"> | |
| 8679 <option value="equal">equal</option> | |
| 8680 <option value="different">different</option> | |
| 8681 <option value="lower">lower</option> | |
| 8682 <option value="equal or lower">equal or lower</option> | |
| 8683 <option value="higher">higher</option> | |
| 8684 <option value="equal or higher">equal or higher</option> | |
| 8685 </param> | |
| 8686 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 8687 </when> | |
| 8688 <when value="strain"> | |
| 8689 <param name="operation" type="select" label="Operator"> | |
| 8690 <option value="equal">equal</option> | |
| 8691 <option value="different">different</option> | |
| 8692 </param> | |
| 8693 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8694 </when> | |
| 8695 <when value="country"> | |
| 8696 <param name="operation" type="select" label="Operator"> | |
| 8697 <option value="equal">equal</option> | |
| 8698 <option value="different">different</option> | |
| 8699 </param> | |
| 8700 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8701 </when> | |
| 8702 <when value="variety"> | |
| 8703 <param name="operation" type="select" label="Operator"> | |
| 8704 <option value="equal">equal</option> | |
| 8705 <option value="different">different</option> | |
| 8706 </param> | |
| 8707 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8708 </when> | |
| 8709 <when value="environmental_sample"> | |
| 8710 <param name="operation" type="select" label="Operator"> | |
| 8711 <option value="equal">equal</option> | |
| 8712 </param> | |
| 8713 <param name="value" type="select" label="Value"> | |
| 8714 <option value="yes">yes</option> | |
| 8715 <option value="true">true</option> | |
| 8716 <option value="no">no</option> | |
| 8717 <option value="false">false</option> | |
| 8718 </param> | |
| 8719 </when> | |
| 8720 <when value="tissue_type"> | |
| 8721 <param name="operation" type="select" label="Operator"> | |
| 8722 <option value="equal">equal</option> | |
| 8723 <option value="different">different</option> | |
| 8724 </param> | |
| 8725 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8726 </when> | |
| 8727 <when value="keywords"> | |
| 8728 <param name="operation" type="select" label="Operator"> | |
| 8729 <option value="equal">equal</option> | |
| 8730 <option value="different">different</option> | |
| 8731 </param> | |
| 8732 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8733 </when> | |
| 8734 <when value="culture_collection"> | |
| 8735 <param name="operation" type="select" label="Operator"> | |
| 8736 <option value="equal">equal</option> | |
| 8737 <option value="different">different</option> | |
| 8738 </param> | |
| 8739 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8740 </when> | |
| 8741 </conditional> | |
| 8742 </repeat> | |
| 8743 <conditional name="display_opt"> | |
| 8744 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 8745 <expand macro="display_options"/> | |
| 8746 </param> | |
| 8747 <when value="xml"> | |
| 8748 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8749 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8750 </when> | |
| 8751 <when value="text"> | |
| 8752 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8753 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8754 </when> | |
| 8755 <when value="fastq"/> | |
| 8756 <when value="html"> | |
| 8757 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8758 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8759 </when> | |
| 8760 <when value="report"> | |
| 8761 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8762 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8763 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 8764 <option value="accession">accession</option> | |
| 8765 <option value="bio_material">bio_material</option> | |
| 8766 <option value="cell_line">cell_line</option> | |
| 8767 <option value="cell_type">cell_type</option> | |
| 8768 <option value="collected_by">collected_by</option> | |
| 8769 <option value="collection_date">collection_date</option> | |
| 8770 <option value="country">country</option> | |
| 8771 <option value="cultivar">cultivar</option> | |
| 8772 <option value="culture_collection">culture_collection</option> | |
| 8773 <option value="description">description</option> | |
| 8774 <option value="dev_stage">dev_stage</option> | |
| 8775 <option value="ecotype">ecotype</option> | |
| 8776 <option value="environmental_sample">environmental_sample</option> | |
| 8777 <option value="first_public">first_public</option> | |
| 8778 <option value="germline">germline</option> | |
| 8779 <option value="host">host</option> | |
| 8780 <option value="identified_by">identified_by</option> | |
| 8781 <option value="isolate">isolate</option> | |
| 8782 <option value="isolation_source">isolation_source</option> | |
| 8783 <option value="keywords">keywords</option> | |
| 8784 <option value="lab_host">lab_host</option> | |
| 8785 <option value="last_updated">last_updated</option> | |
| 8786 <option value="location">location</option> | |
| 8787 <option value="mating_type">mating_type</option> | |
| 8788 <option value="mol_type">mol_type</option> | |
| 8789 <option value="serotype">serotype</option> | |
| 8790 <option value="serovar">serovar</option> | |
| 8791 <option value="sex">sex</option> | |
| 8792 <option value="submitted_sex">submitted_sex</option> | |
| 8793 <option value="specimen_voucher">specimen_voucher</option> | |
| 8794 <option value="strain">strain</option> | |
| 8795 <option value="sub_species">sub_species</option> | |
| 8796 <option value="sub_strain">sub_strain</option> | |
| 8797 <option value="tax_division">tax_division</option> | |
| 8798 <option value="tissue_lib">tissue_lib</option> | |
| 8799 <option value="tissue_type">tissue_type</option> | |
| 8800 <option value="variety">variety</option> | |
| 8801 <option value="tax_id">tax_id</option> | |
| 8802 <option value="scientific_name">scientific_name</option> | |
| 8803 <option value="altitude">altitude</option> | |
| 8804 <option value="haplotype">haplotype</option> | |
| 8805 <option value="study_accession">study_accession</option> | |
| 8806 <option value="set_files">set_files</option> | |
| 8807 </param> | |
| 8808 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 8809 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 8810 <option value="last_updated">date when last updated</option> | |
| 8811 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 8812 <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option> | |
| 8813 <option value="accession">accession number</option> | |
| 8814 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 8815 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 8816 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 8817 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 8818 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 8819 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 8820 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 8821 <option value="tax_division">taxonomic division</option> | |
| 8822 <option value="collection_date">date that the specimen was collected</option> | |
| 8823 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 8824 <option value="altitude">Altitude (m)</option> | |
| 8825 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 8826 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 8827 <option value="location">geographic location of isolation of the sample</option> | |
| 8828 <option value="study_accession">study accession number</option> | |
| 8829 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 8830 <option value="description">brief sequence description</option> | |
| 8831 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 8832 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 8833 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 8834 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 8835 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 8836 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 8837 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 8838 <option value="collected_by">name of the person who collected the specimen</option> | |
| 8839 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 8840 <option value="first_public">date when made public</option> | |
| 8841 <option value="strain">strain from which sample was obtained</option> | |
| 8842 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 8843 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 8844 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 8845 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 8846 <option value="keywords">keywords associated with sequence</option> | |
| 8847 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 8848 </param> | |
| 8849 </when> | |
| 8850 <when value="fasta"/> | |
| 8851 </conditional> | |
| 8852 </when> | |
| 8853 <when value="analysis_study"> | |
| 8854 <repeat name="queries" title="Add a query"> | |
| 8855 <param name="combination_operation" type="select" label="Combination operation"> | |
| 8856 <option value="AND">AND</option> | |
| 8857 <option value="OR">OR</option> | |
| 8858 <option value="NOT">NOT</option> | |
| 8859 </param> | |
| 8860 <conditional name="filter_field"> | |
| 8861 <param name="field" type="select" label="Field to query"> | |
| 8862 <option value="study_title">brief sequencing study description</option> | |
| 8863 <option value="secondary_study_accession">project accession number</option> | |
| 8864 <option value="study_alias">submitter's name for the study</option> | |
| 8865 <option value="study_accession">study accession number</option> | |
| 8866 </param> | |
| 8867 <when value="study_title"> | |
| 8868 <param name="operation" type="select" label="Operator"> | |
| 8869 <option value="equal">equal</option> | |
| 8870 <option value="different">different</option> | |
| 8871 </param> | |
| 8872 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8873 </when> | |
| 8874 <when value="secondary_study_accession"> | |
| 8875 <param name="operation" type="select" label="Operator"> | |
| 8876 <option value="equal">equal</option> | |
| 8877 <option value="different">different</option> | |
| 8878 </param> | |
| 8879 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8880 </when> | |
| 8881 <when value="study_alias"> | |
| 8882 <param name="operation" type="select" label="Operator"> | |
| 8883 <option value="equal">equal</option> | |
| 8884 <option value="different">different</option> | |
| 8885 </param> | |
| 8886 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8887 </when> | |
| 8888 <when value="study_accession"> | |
| 8889 <param name="operation" type="select" label="Operator"> | |
| 8890 <option value="equal">equal</option> | |
| 8891 <option value="different">different</option> | |
| 8892 </param> | |
| 8893 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 8894 </when> | |
| 8895 </conditional> | |
| 8896 </repeat> | |
| 8897 <conditional name="display_opt"> | |
| 8898 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 8899 <expand macro="display_options"/> | |
| 8900 </param> | |
| 8901 <when value="xml"> | |
| 8902 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8903 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8904 </when> | |
| 8905 <when value="text"> | |
| 8906 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8907 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8908 </when> | |
| 8909 <when value="fastq"/> | |
| 8910 <when value="html"> | |
| 8911 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8912 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8913 </when> | |
| 8914 <when value="report"> | |
| 8915 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 8916 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 8917 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 8918 <option value="study_accession">study_accession</option> | |
| 8919 <option value="secondary_study_accession">secondary_study_accession</option> | |
| 8920 <option value="study_title">study_title</option> | |
| 8921 <option value="study_alias">study_alias</option> | |
| 8922 </param> | |
| 8923 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 8924 <option value="study_title">brief sequencing study description</option> | |
| 8925 <option value="secondary_study_accession">project accession number</option> | |
| 8926 <option value="study_alias">submitter's name for the study</option> | |
| 8927 <option value="study_accession">study accession number</option> | |
| 8928 </param> | |
| 8929 </when> | |
| 8930 <when value="fasta"/> | |
| 8931 </conditional> | |
| 8932 </when> | |
| 8933 <when value="noncoding_update"> | |
| 8934 <repeat name="queries" title="Add a query"> | |
| 8935 <param name="combination_operation" type="select" label="Combination operation"> | |
| 8936 <option value="AND">AND</option> | |
| 8937 <option value="OR">OR</option> | |
| 8938 <option value="NOT">NOT</option> | |
| 8939 </param> | |
| 8940 <conditional name="filter_field"> | |
| 8941 <param name="field" type="select" label="Field to query"> | |
| 8942 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 8943 <option value="last_updated">date when last updated</option> | |
| 8944 <option value="sequence_md5"></option> | |
| 8945 <option value="collected_by">name of the person who collected the specimen</option> | |
| 8946 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 8947 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 8948 <option value="keywords">keywords associated with sequence</option> | |
| 8949 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 8950 <option value="inference">a structured description of non-experimental evidence</option> | |
| 8951 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 8952 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 8953 <option value="note">any comment or additional information</option> | |
| 8954 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 8955 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 8956 <option value="tax_division">taxonomic division</option> | |
| 8957 <option value="collection_date">date that the specimen was collected</option> | |
| 8958 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 8959 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 8960 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 8961 <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option> | |
| 8962 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 8963 <option value="location">geographic location of isolation of the sample</option> | |
| 8964 <option value="study_accession">study accession number</option> | |
| 8965 <option value="function">function attributed to a sequence</option> | |
| 8966 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 8967 <option value="product">name of the product associated with the feature</option> | |
| 8968 <option value="description">brief sequence description</option> | |
| 8969 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 8970 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 8971 <option value="accession">accession number</option> | |
| 8972 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 8973 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 8974 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 8975 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 8976 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 8977 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 8978 <option value="base_count">number of base pairs</option> | |
| 8979 <option value="topology">sequence topology: circular or linear</option> | |
| 8980 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 8981 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 8982 <option value="first_public">date when made public</option> | |
| 8983 <option value="strain">strain from which sample was obtained</option> | |
| 8984 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 8985 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 8986 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 8987 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 8988 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 8989 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 8990 <option value="rna_class">classification of RNA</option> | |
| 8991 <option value="dataclass">sequence data class</option> | |
| 8992 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 8993 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 8994 </param> | |
| 8995 <when value="mol_type"> | |
| 8996 <param name="operation" type="select" label="Operator"> | |
| 8997 <option value="equal">equal</option> | |
| 8998 <option value="different">different</option> | |
| 8999 </param> | |
| 9000 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 9001 </when> | |
| 9002 <when value="last_updated"> | |
| 9003 <param name="operation" type="select" label="Operator"> | |
| 9004 <option value="equal">equal</option> | |
| 9005 <option value="different">different</option> | |
| 9006 <option value="lower">lower</option> | |
| 9007 <option value="equal or lower">equal or lower</option> | |
| 9008 <option value="higher">higher</option> | |
| 9009 <option value="equal or higher">equal or higher</option> | |
| 9010 </param> | |
| 9011 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 9012 </when> | |
| 9013 <when value="sequence_md5"> | |
| 9014 <param name="operation" type="select" label="Operator"> | |
| 9015 <option value="equal">equal</option> | |
| 9016 <option value="different">different</option> | |
| 9017 </param> | |
| 9018 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9019 </when> | |
| 9020 <when value="collected_by"> | |
| 9021 <param name="operation" type="select" label="Operator"> | |
| 9022 <option value="equal">equal</option> | |
| 9023 <option value="different">different</option> | |
| 9024 </param> | |
| 9025 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9026 </when> | |
| 9027 <when value="serotype"> | |
| 9028 <param name="operation" type="select" label="Operator"> | |
| 9029 <option value="equal">equal</option> | |
| 9030 <option value="different">different</option> | |
| 9031 </param> | |
| 9032 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9033 </when> | |
| 9034 <when value="sex"> | |
| 9035 <param name="operation" type="select" label="Operator"> | |
| 9036 <option value="equal">equal</option> | |
| 9037 <option value="different">different</option> | |
| 9038 </param> | |
| 9039 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 9040 </when> | |
| 9041 <when value="keywords"> | |
| 9042 <param name="operation" type="select" label="Operator"> | |
| 9043 <option value="equal">equal</option> | |
| 9044 <option value="different">different</option> | |
| 9045 </param> | |
| 9046 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9047 </when> | |
| 9048 <when value="cell_line"> | |
| 9049 <param name="operation" type="select" label="Operator"> | |
| 9050 <option value="equal">equal</option> | |
| 9051 <option value="different">different</option> | |
| 9052 </param> | |
| 9053 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9054 </when> | |
| 9055 <when value="inference"> | |
| 9056 <param name="operation" type="select" label="Operator"> | |
| 9057 <option value="equal">equal</option> | |
| 9058 <option value="different">different</option> | |
| 9059 </param> | |
| 9060 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9061 </when> | |
| 9062 <when value="bio_material"> | |
| 9063 <param name="operation" type="select" label="Operator"> | |
| 9064 <option value="equal">equal</option> | |
| 9065 <option value="different">different</option> | |
| 9066 </param> | |
| 9067 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9068 </when> | |
| 9069 <when value="identified_by"> | |
| 9070 <param name="operation" type="select" label="Operator"> | |
| 9071 <option value="equal">equal</option> | |
| 9072 <option value="different">different</option> | |
| 9073 </param> | |
| 9074 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9075 </when> | |
| 9076 <when value="note"> | |
| 9077 <param name="operation" type="select" label="Operator"> | |
| 9078 <option value="equal">equal</option> | |
| 9079 <option value="different">different</option> | |
| 9080 </param> | |
| 9081 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9082 </when> | |
| 9083 <when value="locus_tag"> | |
| 9084 <param name="operation" type="select" label="Operator"> | |
| 9085 <option value="equal">equal</option> | |
| 9086 <option value="different">different</option> | |
| 9087 </param> | |
| 9088 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9089 </when> | |
| 9090 <when value="lab_host"> | |
| 9091 <param name="operation" type="select" label="Operator"> | |
| 9092 <option value="equal">equal</option> | |
| 9093 <option value="different">different</option> | |
| 9094 </param> | |
| 9095 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9096 </when> | |
| 9097 <when value="tax_division"> | |
| 9098 <param name="operation" type="select" label="Operator"> | |
| 9099 <option value="equal">equal</option> | |
| 9100 <option value="different">different</option> | |
| 9101 </param> | |
| 9102 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 9103 </when> | |
| 9104 <when value="collection_date"> | |
| 9105 <param name="operation" type="select" label="Operator"> | |
| 9106 <option value="equal">equal</option> | |
| 9107 <option value="different">different</option> | |
| 9108 <option value="lower">lower</option> | |
| 9109 <option value="equal or lower">equal or lower</option> | |
| 9110 <option value="higher">higher</option> | |
| 9111 <option value="equal or higher">equal or higher</option> | |
| 9112 </param> | |
| 9113 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 9114 </when> | |
| 9115 <when value="specimen_voucher"> | |
| 9116 <param name="operation" type="select" label="Operator"> | |
| 9117 <option value="equal">equal</option> | |
| 9118 <option value="different">different</option> | |
| 9119 </param> | |
| 9120 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9121 </when> | |
| 9122 <when value="dev_stage"> | |
| 9123 <param name="operation" type="select" label="Operator"> | |
| 9124 <option value="equal">equal</option> | |
| 9125 <option value="different">different</option> | |
| 9126 </param> | |
| 9127 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9128 </when> | |
| 9129 <when value="isolate"> | |
| 9130 <param name="operation" type="select" label="Operator"> | |
| 9131 <option value="equal">equal</option> | |
| 9132 <option value="different">different</option> | |
| 9133 </param> | |
| 9134 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9135 </when> | |
| 9136 <when value="anticodon"> | |
| 9137 <param name="operation" type="select" label="Operator"> | |
| 9138 <option value="equal">equal</option> | |
| 9139 <option value="different">different</option> | |
| 9140 </param> | |
| 9141 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9142 </when> | |
| 9143 <when value="experiment"> | |
| 9144 <param name="operation" type="select" label="Operator"> | |
| 9145 <option value="equal">equal</option> | |
| 9146 <option value="different">different</option> | |
| 9147 </param> | |
| 9148 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9149 </when> | |
| 9150 <when value="location"> | |
| 9151 <conditional name="op"> | |
| 9152 <param name="operation" type="select" label="Operation"> | |
| 9153 <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option> | |
| 9154 <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option> | |
| 9155 <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option> | |
| 9156 <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option> | |
| 9157 <option value="geo_south">All locations south of a given latitude (inclusive).</option> | |
| 9158 <option value="geo_point">An exact lat/lon position</option> | |
| 9159 <option value="geo_north">All locations north of a given latitude (inclusive).</option> | |
| 9160 </param> | |
| 9161 <when value="geo_box2"> | |
| 9162 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 9163 </when> | |
| 9164 <when value="geo_box1"> | |
| 9165 <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/> | |
| 9166 </when> | |
| 9167 <when value="geo_circ"> | |
| 9168 <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/> | |
| 9169 </when> | |
| 9170 <when value="geo_lat"> | |
| 9171 <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/> | |
| 9172 </when> | |
| 9173 <when value="geo_south"> | |
| 9174 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 9175 </when> | |
| 9176 <when value="geo_point"> | |
| 9177 <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/> | |
| 9178 </when> | |
| 9179 <when value="geo_north"> | |
| 9180 <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/> | |
| 9181 </when> | |
| 9182 </conditional> | |
| 9183 </when> | |
| 9184 <when value="study_accession"> | |
| 9185 <param name="operation" type="select" label="Operator"> | |
| 9186 <option value="equal">equal</option> | |
| 9187 <option value="different">different</option> | |
| 9188 </param> | |
| 9189 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9190 </when> | |
| 9191 <when value="function"> | |
| 9192 <param name="operation" type="select" label="Operator"> | |
| 9193 <option value="equal">equal</option> | |
| 9194 <option value="different">different</option> | |
| 9195 </param> | |
| 9196 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9197 </when> | |
| 9198 <when value="germline"> | |
| 9199 <param name="operation" type="select" label="Operator"> | |
| 9200 <option value="equal">equal</option> | |
| 9201 </param> | |
| 9202 <param name="value" type="select" label="Value"> | |
| 9203 <option value="yes">yes</option> | |
| 9204 <option value="true">true</option> | |
| 9205 <option value="no">no</option> | |
| 9206 <option value="false">false</option> | |
| 9207 </param> | |
| 9208 </when> | |
| 9209 <when value="product"> | |
| 9210 <param name="operation" type="select" label="Operator"> | |
| 9211 <option value="equal">equal</option> | |
| 9212 <option value="different">different</option> | |
| 9213 </param> | |
| 9214 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9215 </when> | |
| 9216 <when value="description"> | |
| 9217 <param name="operation" type="select" label="Operator"> | |
| 9218 <option value="equal">equal</option> | |
| 9219 <option value="different">different</option> | |
| 9220 </param> | |
| 9221 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9222 </when> | |
| 9223 <when value="ecotype"> | |
| 9224 <param name="operation" type="select" label="Operator"> | |
| 9225 <option value="equal">equal</option> | |
| 9226 <option value="different">different</option> | |
| 9227 </param> | |
| 9228 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9229 </when> | |
| 9230 <when value="cell_type"> | |
| 9231 <param name="operation" type="select" label="Operator"> | |
| 9232 <option value="equal">equal</option> | |
| 9233 <option value="different">different</option> | |
| 9234 </param> | |
| 9235 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9236 </when> | |
| 9237 <when value="accession"> | |
| 9238 <param name="operation" type="select" label="Operator"> | |
| 9239 <option value="equal">equal</option> | |
| 9240 <option value="different">different</option> | |
| 9241 </param> | |
| 9242 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9243 </when> | |
| 9244 <when value="isolation_source"> | |
| 9245 <param name="operation" type="select" label="Operator"> | |
| 9246 <option value="equal">equal</option> | |
| 9247 <option value="different">different</option> | |
| 9248 </param> | |
| 9249 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9250 </when> | |
| 9251 <when value="mating_type"> | |
| 9252 <param name="operation" type="select" label="Operator"> | |
| 9253 <option value="equal">equal</option> | |
| 9254 <option value="different">different</option> | |
| 9255 </param> | |
| 9256 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9257 </when> | |
| 9258 <when value="tissue_type"> | |
| 9259 <param name="operation" type="select" label="Operator"> | |
| 9260 <option value="equal">equal</option> | |
| 9261 <option value="different">different</option> | |
| 9262 </param> | |
| 9263 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9264 </when> | |
| 9265 <when value="sub_strain"> | |
| 9266 <param name="operation" type="select" label="Operator"> | |
| 9267 <option value="equal">equal</option> | |
| 9268 <option value="different">different</option> | |
| 9269 </param> | |
| 9270 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9271 </when> | |
| 9272 <when value="tissue_lib"> | |
| 9273 <param name="operation" type="select" label="Operator"> | |
| 9274 <option value="equal">equal</option> | |
| 9275 <option value="different">different</option> | |
| 9276 </param> | |
| 9277 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9278 </when> | |
| 9279 <when value="cultivar"> | |
| 9280 <param name="operation" type="select" label="Operator"> | |
| 9281 <option value="equal">equal</option> | |
| 9282 <option value="different">different</option> | |
| 9283 </param> | |
| 9284 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9285 </when> | |
| 9286 <when value="base_count"> | |
| 9287 <param name="operation" type="select" label="Operator"> | |
| 9288 <option value="equal">equal</option> | |
| 9289 <option value="different">different</option> | |
| 9290 <option value="lower">lower</option> | |
| 9291 <option value="equal or lower">equal or lower</option> | |
| 9292 <option value="higher">higher</option> | |
| 9293 <option value="equal or higher">equal or higher</option> | |
| 9294 </param> | |
| 9295 <param name="value" type="float" value="" label="Any integer"/> | |
| 9296 </when> | |
| 9297 <when value="topology"> | |
| 9298 <param name="operation" type="select" label="Operator"> | |
| 9299 <option value="equal">equal</option> | |
| 9300 <option value="different">different</option> | |
| 9301 </param> | |
| 9302 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 9303 </when> | |
| 9304 <when value="sub_species"> | |
| 9305 <param name="operation" type="select" label="Operator"> | |
| 9306 <option value="equal">equal</option> | |
| 9307 <option value="different">different</option> | |
| 9308 </param> | |
| 9309 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9310 </when> | |
| 9311 <when value="environmental_sample"> | |
| 9312 <param name="operation" type="select" label="Operator"> | |
| 9313 <option value="equal">equal</option> | |
| 9314 </param> | |
| 9315 <param name="value" type="select" label="Value"> | |
| 9316 <option value="yes">yes</option> | |
| 9317 <option value="true">true</option> | |
| 9318 <option value="no">no</option> | |
| 9319 <option value="false">false</option> | |
| 9320 </param> | |
| 9321 </when> | |
| 9322 <when value="first_public"> | |
| 9323 <param name="operation" type="select" label="Operator"> | |
| 9324 <option value="equal">equal</option> | |
| 9325 <option value="different">different</option> | |
| 9326 <option value="lower">lower</option> | |
| 9327 <option value="equal or lower">equal or lower</option> | |
| 9328 <option value="higher">higher</option> | |
| 9329 <option value="equal or higher">equal or higher</option> | |
| 9330 </param> | |
| 9331 <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/> | |
| 9332 </when> | |
| 9333 <when value="strain"> | |
| 9334 <param name="operation" type="select" label="Operator"> | |
| 9335 <option value="equal">equal</option> | |
| 9336 <option value="different">different</option> | |
| 9337 </param> | |
| 9338 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9339 </when> | |
| 9340 <when value="country"> | |
| 9341 <param name="operation" type="select" label="Operator"> | |
| 9342 <option value="equal">equal</option> | |
| 9343 <option value="different">different</option> | |
| 9344 </param> | |
| 9345 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9346 </when> | |
| 9347 <when value="variety"> | |
| 9348 <param name="operation" type="select" label="Operator"> | |
| 9349 <option value="equal">equal</option> | |
| 9350 <option value="different">different</option> | |
| 9351 </param> | |
| 9352 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9353 </when> | |
| 9354 <when value="host"> | |
| 9355 <param name="operation" type="select" label="Operator"> | |
| 9356 <option value="equal">equal</option> | |
| 9357 <option value="different">different</option> | |
| 9358 </param> | |
| 9359 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9360 </when> | |
| 9361 <when value="gene_synonym"> | |
| 9362 <param name="operation" type="select" label="Operator"> | |
| 9363 <option value="equal">equal</option> | |
| 9364 <option value="different">different</option> | |
| 9365 </param> | |
| 9366 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9367 </when> | |
| 9368 <when value="organelle"> | |
| 9369 <param name="operation" type="select" label="Operator"> | |
| 9370 <option value="equal">equal</option> | |
| 9371 <option value="different">different</option> | |
| 9372 </param> | |
| 9373 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 9374 </when> | |
| 9375 <when value="serovar"> | |
| 9376 <param name="operation" type="select" label="Operator"> | |
| 9377 <option value="equal">equal</option> | |
| 9378 <option value="different">different</option> | |
| 9379 </param> | |
| 9380 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9381 </when> | |
| 9382 <when value="rna_class"> | |
| 9383 <param name="operation" type="select" label="Operator"> | |
| 9384 <option value="equal">equal</option> | |
| 9385 <option value="different">different</option> | |
| 9386 </param> | |
| 9387 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 9388 </when> | |
| 9389 <when value="dataclass"> | |
| 9390 <param name="operation" type="select" label="Operator"> | |
| 9391 <option value="equal">equal</option> | |
| 9392 <option value="different">different</option> | |
| 9393 </param> | |
| 9394 <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in double quotes"/> | |
| 9395 </when> | |
| 9396 <when value="gene"> | |
| 9397 <param name="operation" type="select" label="Operator"> | |
| 9398 <option value="equal">equal</option> | |
| 9399 <option value="different">different</option> | |
| 9400 </param> | |
| 9401 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9402 </when> | |
| 9403 <when value="culture_collection"> | |
| 9404 <param name="operation" type="select" label="Operator"> | |
| 9405 <option value="equal">equal</option> | |
| 9406 <option value="different">different</option> | |
| 9407 </param> | |
| 9408 <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can be used at the start and/or end of the text value."/> | |
| 9409 </when> | |
| 9410 </conditional> | |
| 9411 </repeat> | |
| 9412 <conditional name="display_opt"> | |
| 9413 <param argument="--display" type="select" label="Display option to specify the display format"> | |
| 9414 <expand macro="display_options"/> | |
| 9415 </param> | |
| 9416 <when value="xml"> | |
| 9417 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 9418 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 9419 </when> | |
| 9420 <when value="text"> | |
| 9421 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 9422 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 9423 </when> | |
| 9424 <when value="fastq"/> | |
| 9425 <when value="html"> | |
| 9426 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 9427 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 9428 </when> | |
| 9429 <when value="report"> | |
| 9430 <param argument="--offset" type="integer" optional="true" label="First record to get"/> | |
| 9431 <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/> | |
| 9432 <param argument="--fields" type="select" multiple="true" label="Fields to return"> | |
| 9433 <option value="accession">accession</option> | |
| 9434 <option value="base_count">base_count</option> | |
| 9435 <option value="collected_by">collected_by</option> | |
| 9436 <option value="dataclass">dataclass</option> | |
| 9437 <option value="first_public">first_public</option> | |
| 9438 <option value="last_updated">last_updated</option> | |
| 9439 <option value="location">location</option> | |
| 9440 <option value="tax_division">tax_division</option> | |
| 9441 <option value="tax_id">tax_id</option> | |
| 9442 <option value="scientific_name">scientific_name</option> | |
| 9443 <option value="rna_class">rna_class</option> | |
| 9444 <option value="gene">gene</option> | |
| 9445 <option value="gene_synonym">gene_synonym</option> | |
| 9446 <option value="product">product</option> | |
| 9447 <option value="anticodon">anticodon</option> | |
| 9448 <option value="function">function</option> | |
| 9449 <option value="locus_tag">locus_tag</option> | |
| 9450 <option value="experiment">experiment</option> | |
| 9451 <option value="inference">inference</option> | |
| 9452 <option value="note">note</option> | |
| 9453 <option value="bio_material">bio_material</option> | |
| 9454 <option value="cell_line">cell_line</option> | |
| 9455 <option value="cell_type">cell_type</option> | |
| 9456 <option value="country">country</option> | |
| 9457 <option value="cultivar">cultivar</option> | |
| 9458 <option value="culture_collection">culture_collection</option> | |
| 9459 <option value="description">description</option> | |
| 9460 <option value="dev_stage">dev_stage</option> | |
| 9461 <option value="ecotype">ecotype</option> | |
| 9462 <option value="environmental_sample">environmental_sample</option> | |
| 9463 <option value="germline">germline</option> | |
| 9464 <option value="host">host</option> | |
| 9465 <option value="identified_by">identified_by</option> | |
| 9466 <option value="isolate">isolate</option> | |
| 9467 <option value="isolation_source">isolation_source</option> | |
| 9468 <option value="keywords">keywords</option> | |
| 9469 <option value="lab_host">lab_host</option> | |
| 9470 <option value="mating_type">mating_type</option> | |
| 9471 <option value="mol_type">mol_type</option> | |
| 9472 <option value="organelle">organelle</option> | |
| 9473 <option value="serotype">serotype</option> | |
| 9474 <option value="serovar">serovar</option> | |
| 9475 <option value="sex">sex</option> | |
| 9476 <option value="collection_date">collection_date</option> | |
| 9477 <option value="submitted_sex">submitted_sex</option> | |
| 9478 <option value="specimen_voucher">specimen_voucher</option> | |
| 9479 <option value="strain">strain</option> | |
| 9480 <option value="sub_species">sub_species</option> | |
| 9481 <option value="sub_strain">sub_strain</option> | |
| 9482 <option value="tissue_lib">tissue_lib</option> | |
| 9483 <option value="tissue_type">tissue_type</option> | |
| 9484 <option value="topology">topology</option> | |
| 9485 <option value="variety">variety</option> | |
| 9486 <option value="sequence_md5">sequence_md5</option> | |
| 9487 <option value="study_accession">study_accession</option> | |
| 9488 </param> | |
| 9489 <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results"> | |
| 9490 <option value="mol_type">in vivo molecule type of the sequence</option> | |
| 9491 <option value="last_updated">date when last updated</option> | |
| 9492 <option value="sequence_md5"></option> | |
| 9493 <option value="collected_by">name of the person who collected the specimen</option> | |
| 9494 <option value="serotype">serological variety of a species characterized by its antigenic properties</option> | |
| 9495 <option value="sex">sex of the organism from which the sample was obtained</option> | |
| 9496 <option value="keywords">keywords associated with sequence</option> | |
| 9497 <option value="cell_line">cell line from which the sample was obtained</option> | |
| 9498 <option value="inference">a structured description of non-experimental evidence</option> | |
| 9499 <option value="bio_material">identifier for biological material including institute and collection code</option> | |
| 9500 <option value="identified_by">name of the taxonomist who identified the specimen</option> | |
| 9501 <option value="note">any comment or additional information</option> | |
| 9502 <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option> | |
| 9503 <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option> | |
| 9504 <option value="tax_division">taxonomic division</option> | |
| 9505 <option value="collection_date">date that the specimen was collected</option> | |
| 9506 <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option> | |
| 9507 <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option> | |
| 9508 <option value="isolate">individual isolate from which sample was obtained</option> | |
| 9509 <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option> | |
| 9510 <option value="experiment">a brief description of the nature of the experimental evidence</option> | |
| 9511 <option value="location">geographic location of isolation of the sample</option> | |
| 9512 <option value="study_accession">study accession number</option> | |
| 9513 <option value="function">function attributed to a sequence</option> | |
| 9514 <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option> | |
| 9515 <option value="product">name of the product associated with the feature</option> | |
| 9516 <option value="description">brief sequence description</option> | |
| 9517 <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option> | |
| 9518 <option value="cell_type">cell type from which the sample was obtained</option> | |
| 9519 <option value="accession">accession number</option> | |
| 9520 <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option> | |
| 9521 <option value="mating_type">mating type of the organism from which the sequence was obtained</option> | |
| 9522 <option value="tissue_type">tissue type from which the sample was obtained</option> | |
| 9523 <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option> | |
| 9524 <option value="tissue_lib">tissue library from which sample was obtained</option> | |
| 9525 <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option> | |
| 9526 <option value="base_count">number of base pairs</option> | |
| 9527 <option value="topology">sequence topology: circular or linear</option> | |
| 9528 <option value="sub_species">name of sub-species of organism from which sample was obtained</option> | |
| 9529 <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option> | |
| 9530 <option value="first_public">date when made public</option> | |
| 9531 <option value="strain">strain from which sample was obtained</option> | |
| 9532 <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option> | |
| 9533 <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option> | |
| 9534 <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option> | |
| 9535 <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option> | |
| 9536 <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option> | |
| 9537 <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option> | |
| 9538 <option value="rna_class">classification of RNA</option> | |
| 9539 <option value="dataclass">sequence data class</option> | |
| 9540 <option value="gene">symbol of the gene corresponding to a sequence region</option> | |
| 9541 <option value="culture_collection">identifier for the sample culture including institute and collection code</option> | |
| 9542 </param> | |
| 9543 </when> | |
| 9544 <when value="fasta"/> | |
| 9545 </conditional> | |
| 9546 </when> | |
| 9547 </conditional> | |
| 9548 </xml> | |
| 9549 </macros> |