changeset 0:34d21959dc25 draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
author iuc
date Tue, 29 Aug 2017 04:14:07 -0400
parents
children 8881ac3eebd7
files README.md enasearch_retrieve_taxons.xml generate_macros.py macros.xml search_macros.xml
diffstat 5 files changed, 9942 insertions(+), 0 deletions(-) [+]
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Tue Aug 29 04:14:07 2017 -0400
@@ -0,0 +1,11 @@
+ENASearch
+=========
+
+[ENASearch](https://github.com/bebatut/enasearch) is a Python library for interacting with [ENA](http://www.ebi.ac.uk/ena/browse/programmatic-access)'s API.
+
+For any change in the `macros.xml`, please change on [`generate_macros.py`](generate_macros.py) and regenerate the `macros.xml` with
+
+```
+$ conda install enasearch
+$ python generate_macros.py
+```
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/enasearch_retrieve_taxons.xml	Tue Aug 29 04:14:07 2017 -0400
@@ -0,0 +1,59 @@
+<tool id="enasearch_retrieve_taxons" name="Retrieve ENA taxon data" version="@WRAPPER_VERSION@.0">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+        <import>search_macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="version"/>
+    <command detect_errors="aggressive"><![CDATA[
+enasearch
+    retrieve_taxons
+    @IDS@
+    #if $result
+        --result '$result'
+    #end if
+    @DISPLAY@
+    $expanded
+    $header
+    --file '$output'
+    --download 'txt'
+    ]]></command>
+    <inputs>
+        <param argument="--ids" type="text" multiple="true" label="Ids for records to return"/>
+        <param argument="--result" type="select" optional="true" label="Taxonomy result to return">
+            <expand macro="taxonomy_results"/>
+        </param>
+        <expand macro="display_opt"/>
+        <expand macro="expanded"/>
+        <expand macro="header"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" label="${tool.name} on ${ids}">
+            <expand macro="change_format"/>
+        </data>
+    </outputs>
+    <tests>
+        <test>
+            <param name="ids" value="6543"/>
+            <param name="result" value="sequence_release"/>
+            <conditional name="display_opt">
+                <param name="display" value="fasta"/>
+            </conditional>
+            <output name="output" ftype="fasta" md5="e2fe353d00ffdec2f8b884903add458b"/>
+        </test>
+        <test>
+            <param name="ids" value="Human,Cat,Mouse,Zebrafish"/>
+            <conditional name="display_opt">
+                <param name="display" value="xml"/>
+            </conditional>
+            <output name="output" ftype="xml" md5="0833f5ac248a3e7f382e4d53762fc71d"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+This tool retrieve ENA taxon data
+    ]]></help>
+    <expand macro="citations"/>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/generate_macros.py	Tue Aug 29 04:14:07 2017 -0400
@@ -0,0 +1,227 @@
+#!/usr/bin/env python
+
+import enasearch
+
+spaces = '    '
+operator_names = {
+    "=": "equal",
+    "!=": "different",
+    "<": "lower",
+    "<=": "equal or lower",
+    ">": "higher",
+    ">=": "equal or higher",
+}
+
+
+def format_name(name, alternative_name):
+    """
+    Format name to remove None name and & in name
+    """
+    if name is None:
+        name = alternative_name
+    name = name.replace("&", "and")
+    return name
+
+
+def sort_by_name(dict):
+    """
+    Sort a dictionary on the values
+    """
+    return sorted(dict, key=dict.get)
+
+
+def write_analysis_fields():
+    """
+    Write the analysis fields
+    """
+    s = '%s<xml name="analysis_fields">\n' % (spaces)
+    fields = enasearch.get_returnable_fields(result="analysis", verbose=False)
+    for f in fields:
+        s += '%s<option value="%s">%s</option>\n' % (2 * spaces, f, f)
+    s += '%s</xml>\n' % (spaces)
+    return s
+
+
+def write_display_options():
+    """
+    Write the display options
+    """
+    s = '%s<xml name="display_options">\n' % (spaces)
+    when_s = '%s<xml name="when_display_options">\n' % (spaces)
+    options = enasearch.get_display_options(verbose=False)
+    for opt in options:
+        s += '%s<option value="%s">%s</option>\n' % (2 * spaces, opt, options[opt]['description'])
+        when_s += '%s<when value="%s">\n' % (2 * spaces, opt)
+        if opt == 'fasta' or opt == 'fastq':
+            when_s += '%s<param name="range_start" argument="--subseq_range" type="integer" optional="true" label="Start integer for subsequences"/>\n' % (3 * spaces)
+            when_s += '%s<param name="range_stop" argument="--subseq_range" type="integer" optional="true" label="Stop integer for subsequences"/>\n' % (3 * spaces)
+        else:
+            when_s += '%s<param argument="--offset" type="integer" optional="true" label="First record to get"/>\n' % (3 * spaces)
+            when_s += '%s<param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>\n' % (3 * spaces)
+        when_s += '%s</when>\n' % (2 * spaces)
+    s += '%s</xml>\n' % (spaces)
+    when_s += '%s</xml>\n' % (spaces)
+    s += when_s
+    return s
+
+
+def write_run_fields():
+    """
+    Write the run fields
+    """
+    s = '%s<xml name="run_fields">\n' % (spaces)
+    fields = enasearch.get_returnable_fields(result="read_run", verbose=False)
+    for f in fields:
+        s += '%s<option value="%s">%s</option>\n' % (2 * spaces, f, f)
+    s += '%s</xml>\n' % (spaces)
+    return s
+
+
+def write_taxonomy_results():
+    """
+    Write the possible taxonomy results
+    """
+    s = '%s<xml name="taxonomy_results">\n' % (spaces)
+    fields = enasearch.get_taxonomy_results(verbose=False)
+    for f in fields:
+        s += '%s<option value="%s">%s</option>\n' % (2 * spaces, f, fields[f]['description'])
+    s += '%s</xml>\n' % (spaces)
+    return s
+
+
+def write_result_parameters(fts=False):
+    """
+    Write the parameters that are dependant of results
+    """
+    res = enasearch.get_results(verbose=False)
+    options = enasearch.get_display_options(verbose=False)
+    ft = enasearch.get_filter_types(verbose=False)
+    # Format the filter type related parameters
+    ft_parameters = {}
+    for t in ft:
+        s = ''
+        if 'operators' in ft[t]:
+            s = '%s<param name="operation" type="select" label="Operator">\n' % (7 * spaces)
+            for o in ft[t]['operators']:
+                on = o
+                if o in operator_names:
+                    on = operator_names[o]
+                s += '%s<option value="%s">%s</option>\n' % (8 * spaces, on, on)
+            s += '%s</param>\n' % (7 * spaces)
+            if 'value' in ft[t]:
+                value_format = 'float' if t == 'Number' else 'text'
+                s += '%s<param name="value" type="%s" value="" label="%s"/>\n' % (7 * spaces, value_format, ft[t]['value'])
+            elif 'values' in ft[t]:
+                s += '%s<param name="value" type="select" label="Value">\n' % (7 * spaces)
+                for v in ft[t]['values']:
+                    s += '%s<option value="%s">%s</option>\n' % (8 * spaces, v, v)
+                s += '%s</param>\n' % (7 * spaces)
+        else:
+            s += '%s<conditional name="op">\n' % (7 * spaces)
+            s += '%s<param name="operation" type="select" label="Operation">\n' % (8 * spaces)
+            for op in ft[t]:
+                s += '%s<option value="%s">%s</option>\n' % (9 * spaces, op, ft[t][op]['description'])
+            s += '%s</param>\n' % (8 * spaces)
+            for op in ft[t]:
+                s += '%s<when value="%s">\n' % (8 * spaces, op)
+                s += '%s<param name="values" type="text" value="" label="%s" help="Values separated by simple comma"/>\n' % (9 * spaces, ",".join(ft[t][op]['parameters']))
+                s += '%s</when>\n' % (8 * spaces)
+            s += '%s</conditional>\n' % (7 * spaces)
+        ft_parameters[t] = s
+    # Start adding the conditional
+    s = '%s<conditional name="res">\n' % (2 * spaces)
+    # Add result parameter
+    s += '%s<param argument="--result" type="select" label="Result to return">\n' % (3 * spaces)
+    for r in res:
+        s += '%s<option value="%s">%s</option>\n' % (4 * spaces, r, res[r]['description'])
+    s += '%s</param>\n' % (3 * spaces)
+    for r in res:
+        sf = enasearch.get_sortable_fields(r)
+        ff = res[r]['filter_fields']
+        s += '%s<when value="%s">\n' % (3 * spaces, r)
+        if not fts:
+            s += '%s<repeat name="queries" title="Add a query">\n' % (4 * spaces)
+            # Add combination operator
+            s += '%s<param name="combination_operation" type="select" label="Combination operation">\n' % (5 * spaces)
+            s += '%s<option value="AND">AND</option>\n' % (6 * spaces)
+            s += '%s<option value="OR">OR</option>\n' % (6 * spaces)
+            s += '%s<option value="NOT">NOT</option>\n' % (6 * spaces)
+            s += '%s</param>\n' % (5 * spaces)
+            s += '%s<conditional name="filter_field">\n' % (5 * spaces)
+            s += '%s<param name="field" type="select" label="Field to query">\n' % (6 * spaces)
+            for f in ff:
+                s += '%s<option value="%s">%s</option>\n' % (7 * spaces, f, ff[f]['description'])
+            s += '%s</param>\n' % (6 * spaces)
+            for f in ff:
+                # Add the correct parameter given the type of field
+                typ = ff[f]['type'].capitalize()
+                if typ not in ft_parameters:
+                    if f == 'location':
+                        typ = 'Geospatial'
+                    else:
+                        continue
+                s += '%s<when value="%s">\n' % (6 * spaces, f)
+                s += ft_parameters[typ]
+                s += '%s</when>\n' % (6 * spaces)
+            s += '%s</conditional>\n' % (5 * spaces)
+            s += '%s</repeat>\n' % (4 * spaces)
+        # Add display opt
+        s += '%s<conditional name="display_opt">\n' % (4 * spaces)
+        s += '%s<param argument="--display" type="select" label="Display option to specify the display format">\n' % (5 * spaces)
+        s += '%s<expand macro="display_options"/>\n' % (6 * spaces)
+        s += '%s</param>\n' % (5 * spaces)
+        for opt in options:
+            s += '%s<when value="%s"' % (5 * spaces, opt)
+            if opt != 'fasta' and opt != 'fastq':
+                s += '>\n'
+                s += '%s<param argument="--offset" type="integer" optional="true" label="First record to get"/>\n' % (6 * spaces)
+                s += '%s<param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>\n' % (6 * spaces)
+                if opt == 'report':
+                    s += '%s<param argument="--fields" type="select" multiple="true" label="Fields to return">\n' % (6 * spaces)
+                    for f in res[r]['returnable_fields']:
+                        s += '%s<option value="%s">%s</option>\n' % (7 * spaces, f, f)
+                    s += '%s</param>\n' % (6 * spaces)
+                    s += '%s<param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">\n' % (6 * spaces)
+                    for f in sf:
+                        s += '%s<option value="%s">%s</option>\n' % (7 * spaces, f, sf[f]['description'])
+                    s += '%s</param>\n' % (6 * spaces)
+                s += '%s</when>\n' % (5 * spaces)
+            else:
+                s += '/>\n'
+        s += '%s</conditional>\n' % (4 * spaces)
+        s += '%s</when>\n' % (3 * spaces)
+    s += '%s</conditional>\n' % (2 * spaces)
+    return s
+
+
+def write_search_data_parameters():
+    """
+    Write the parameters for search_data
+    """
+    fts = '%s<xml name="free_text_search">\n' % (spaces)
+    fts += write_result_parameters(True)
+    fts += '%s</xml>\n' % (spaces)
+    cts = '%s<xml name="conditional_text_search">\n' % (spaces)
+    cts += write_result_parameters(False)
+    cts += '%s</xml>\n' % (spaces)
+    return fts + cts
+
+
+def generate_search_macros(filepath):
+    """
+    Generate the content of the macro file
+    """
+    s = '<?xml version="1.0" ?>\n'
+    s += '<macros>\n'
+    s += write_analysis_fields()
+    s += write_display_options()
+    s += write_run_fields()
+    s += write_taxonomy_results()
+    s += write_search_data_parameters()
+    s += '</macros>\n'
+    with open(filepath, "w") as file:
+        file.write(s)
+
+
+if __name__ == '__main__':
+    generate_search_macros("search_macros.xml")
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Aug 29 04:14:07 2017 -0400
@@ -0,0 +1,96 @@
+<?xml version="1.0" ?>
+<macros>
+    <token name="@WRAPPER_VERSION@">0.1.1</token>
+    <xml name="version">
+        <version_command>@WRAPPER_VERSION@</version_command>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@WRAPPER_VERSION@">enasearch</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <xml name="citations"/>
+    <token name="@IDS@">
+<![CDATA[
+    #for $id in str($ids).split(',')
+        --ids '$id'
+    #end for
+]]>
+    </token>
+    <xml name="display_opt">
+        <conditional name="display_opt">
+            <param argument="--display" type="select" label="Display option to specify the display format">
+                <expand macro="display_options"/>
+            </param>
+            <expand macro="when_display_options"/>
+        </conditional>
+    </xml>
+    <token name="@DISPLAY@">
+<![CDATA[
+    --display '$display_opt.display'
+    #if $display_opt.display == 'fasta' or $display_opt.display == 'fastq'
+        #if str($display_opt.range_start) != '' and str($display_opt.range_stop) != ''
+            --subseq_range '$display_opt.range_start'-'$display_opt.range_stop'
+        #end if
+    #else
+        #if str($display_opt.offset) != ''
+            --offset '$display_opt.offset'
+        #end if
+        #if str($display_opt.length) != ''
+            --length '$display_opt.length'
+        #end if
+    #end if
+]]>
+    </token>
+    <xml name="expanded">
+        <param argument="--expanded" type="boolean" truevalue="--expanded" falsevalue="" label="Expand a CON record?"/>
+    </xml>
+    <xml name="header">
+        <param argument="--header" type="boolean" truevalue="--header" falsevalue="" label="Obtain only the header of a record?"/>
+    </xml>
+    <xml name="accession">
+        <param argument="--accession" type="text" label="Accession id" help="Study accessions (ERP, SRP, DRP, PRJ prefixes), experiment accessions (ERX, SRX, DRX prefixes), sample accessions (ERS, SRS, DRS, SAM prefixes) and run accessions"/>
+    </xml>
+    <token name="@FIELDS@">
+<![CDATA[
+    #if $fields
+        #for $f in str($fields).split(',')
+            --fields '$f'
+        #end for
+    #end if
+]]>
+    </token>
+    <xml name="change_format">
+        <change_format>
+            <when input="display_opt.display" value="fasta" format="fasta" />
+            <when input="display_opt.display" value="fastq" format="fastq" />
+            <when input="display_opt.display" value="html" format="html" />
+            <when input="display_opt.display" value="text" format="text" />
+            <when input="display_opt.display" value="xml" format="xml" />
+        </change_format>
+    </xml>
+    <token name="@SEARCH_DATA_DISPLAY@">
+<![CDATA[
+    --display '$query_type.res.display_opt.display'
+    #if $query_type.res.display_opt.display != 'fasta' and $query_type.res.display_opt.display != 'fastq'
+        #if str($query_type.res.display_opt.offset) != ''
+            --offset '$query_type.res.display_opt.offset'
+        #end if
+        #if str($query_type.res.display_opt.length) != ''
+            --length '$query_type.res.display_opt.length'
+        #end if
+        #if $query_type.res.display_opt.display == 'report'
+            #for $f in str($query_type.res.display_opt.fields).split(',')
+                --fields '$f'
+            #end for
+            #if $query_type.res.display_opt.sortfields
+                #for $f in str($query_type.res.display_opt.sortfields).split(',')
+                    --sortfields '$f'
+                #end for
+            #end if
+        #end if
+    #end if
+]]>
+    </token>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/search_macros.xml	Tue Aug 29 04:14:07 2017 -0400
@@ -0,0 +1,9549 @@
+<?xml version="1.0" ?>
+<macros>
+    <xml name="analysis_fields">
+        <option value="analysis_accession">analysis_accession</option>
+        <option value="study_accession">study_accession</option>
+        <option value="secondary_study_accession">secondary_study_accession</option>
+        <option value="sample_accession">sample_accession</option>
+        <option value="secondary_sample_accession">secondary_sample_accession</option>
+        <option value="analysis_title">analysis_title</option>
+        <option value="analysis_type">analysis_type</option>
+        <option value="center_name">center_name</option>
+        <option value="first_public">first_public</option>
+        <option value="last_updated">last_updated</option>
+        <option value="study_title">study_title</option>
+        <option value="tax_id">tax_id</option>
+        <option value="scientific_name">scientific_name</option>
+        <option value="analysis_alias">analysis_alias</option>
+        <option value="study_alias">study_alias</option>
+        <option value="submitted_bytes">submitted_bytes</option>
+        <option value="submitted_md5">submitted_md5</option>
+        <option value="submitted_ftp">submitted_ftp</option>
+        <option value="submitted_aspera">submitted_aspera</option>
+        <option value="submitted_galaxy">submitted_galaxy</option>
+        <option value="sample_alias">sample_alias</option>
+        <option value="broker_name">broker_name</option>
+    </xml>
+    <xml name="display_options">
+        <option value="xml">Results are displayed in XML format. Supported by all ENA data classes.</option>
+        <option value="text">Results are displayed in text format. Supported only by assembled and annotated sequence data classes.</option>
+        <option value="fastq">Results are displayed in fastq format. Supported only by Trace data class.</option>
+        <option value="html">Results are displayed in HTML format. Supported by all ENA data classes. HTML is the default display format if no other display option has been specified.</option>
+        <option value="report">Results are displayed as a tab separated report</option>
+        <option value="fasta">Results are displayed in fasta format. Supported by assembled and annotated sequence and Trace data classes.</option>
+    </xml>
+    <xml name="when_display_options">
+        <when value="xml">
+            <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+            <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+        </when>
+        <when value="text">
+            <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+            <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+        </when>
+        <when value="fastq">
+            <param name="range_start" argument="--subseq_range" type="integer" optional="true" label="Start integer for subsequences"/>
+            <param name="range_stop" argument="--subseq_range" type="integer" optional="true" label="Stop integer for subsequences"/>
+        </when>
+        <when value="html">
+            <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+            <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+        </when>
+        <when value="report">
+            <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+            <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+        </when>
+        <when value="fasta">
+            <param name="range_start" argument="--subseq_range" type="integer" optional="true" label="Start integer for subsequences"/>
+            <param name="range_stop" argument="--subseq_range" type="integer" optional="true" label="Stop integer for subsequences"/>
+        </when>
+    </xml>
+    <xml name="run_fields">
+        <option value="study_accession">study_accession</option>
+        <option value="secondary_study_accession">secondary_study_accession</option>
+        <option value="sample_accession">sample_accession</option>
+        <option value="secondary_sample_accession">secondary_sample_accession</option>
+        <option value="experiment_accession">experiment_accession</option>
+        <option value="run_accession">run_accession</option>
+        <option value="submission_accession">submission_accession</option>
+        <option value="tax_id">tax_id</option>
+        <option value="scientific_name">scientific_name</option>
+        <option value="instrument_platform">instrument_platform</option>
+        <option value="instrument_model">instrument_model</option>
+        <option value="library_name">library_name</option>
+        <option value="nominal_length">nominal_length</option>
+        <option value="library_layout">library_layout</option>
+        <option value="library_strategy">library_strategy</option>
+        <option value="library_source">library_source</option>
+        <option value="library_selection">library_selection</option>
+        <option value="read_count">read_count</option>
+        <option value="base_count">base_count</option>
+        <option value="center_name">center_name</option>
+        <option value="first_public">first_public</option>
+        <option value="last_updated">last_updated</option>
+        <option value="experiment_title">experiment_title</option>
+        <option value="study_title">study_title</option>
+        <option value="study_alias">study_alias</option>
+        <option value="experiment_alias">experiment_alias</option>
+        <option value="run_alias">run_alias</option>
+        <option value="fastq_bytes">fastq_bytes</option>
+        <option value="fastq_md5">fastq_md5</option>
+        <option value="fastq_ftp">fastq_ftp</option>
+        <option value="fastq_aspera">fastq_aspera</option>
+        <option value="fastq_galaxy">fastq_galaxy</option>
+        <option value="submitted_bytes">submitted_bytes</option>
+        <option value="submitted_md5">submitted_md5</option>
+        <option value="submitted_ftp">submitted_ftp</option>
+        <option value="submitted_aspera">submitted_aspera</option>
+        <option value="submitted_galaxy">submitted_galaxy</option>
+        <option value="submitted_format">submitted_format</option>
+        <option value="sra_bytes">sra_bytes</option>
+        <option value="sra_md5">sra_md5</option>
+        <option value="sra_ftp">sra_ftp</option>
+        <option value="sra_aspera">sra_aspera</option>
+        <option value="sra_galaxy">sra_galaxy</option>
+        <option value="cram_index_ftp">cram_index_ftp</option>
+        <option value="cram_index_aspera">cram_index_aspera</option>
+        <option value="cram_index_galaxy">cram_index_galaxy</option>
+        <option value="sample_alias">sample_alias</option>
+        <option value="broker_name">broker_name</option>
+    </xml>
+    <xml name="taxonomy_results">
+        <option value="noncoding_release">Non-coding sequences (Release)</option>
+        <option value="sequence_release">Nucleotide Sequences (Release)</option>
+        <option value="study">Studies</option>
+        <option value="read_trace">Capillary Traces in Trace Archive</option>
+        <option value="coding_release">Protein-coding sequences (Release)</option>
+        <option value="sample">Samples</option>
+        <option value="read_run">Raw reads</option>
+        <option value="read_study">Raw reads (grouped by study)</option>
+        <option value="read_experiment">Raw reads (grouped by experiment)</option>
+        <option value="analysis">Nucleotide sequence analyses</option>
+        <option value="sequence_update">Nucleotide Sequences (Update)</option>
+        <option value="coding_update">Protein-coding sequences (Update)</option>
+        <option value="analysis_study">Nucleotide sequence analyses (grouped by study)</option>
+        <option value="noncoding_update">Non-coding sequences (Update)</option>
+    </xml>
+    <xml name="free_text_search">
+        <conditional name="res">
+            <param argument="--result" type="select" label="Result to return">
+                <option value="noncoding_release">Non-coding sequences (Release)</option>
+                <option value="assembly">Genome assemblies</option>
+                <option value="sequence_release">Nucleotide sequences (Release)</option>
+                <option value="wgs_set">Genome assembly contig set</option>
+                <option value="study">Studies</option>
+                <option value="taxon">Taxonomic classification</option>
+                <option value="coding_release">Protein-coding sequences (Release)</option>
+                <option value="sample">Samples</option>
+                <option value="environmental">Environmental samples</option>
+                <option value="read_run">Raw reads</option>
+                <option value="read_study">Raw reads (grouped by study)</option>
+                <option value="read_experiment">Raw reads (grouped by experiment)</option>
+                <option value="analysis">Nucleotide sequence analyses from reads</option>
+                <option value="sequence_update">Nucleotide sequences (Update)</option>
+                <option value="coding_update">Protein-coding sequences (Update)</option>
+                <option value="tsa_set">Transcriptome assembly contig set</option>
+                <option value="analysis_study">Nucleotide sequence analyses from reads (grouped by study)</option>
+                <option value="noncoding_update">Non-coding sequences (Update)</option>
+            </param>
+            <when value="noncoding_release">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="first_public">first_public</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="rna_class">rna_class</option>
+                            <option value="gene">gene</option>
+                            <option value="gene_synonym">gene_synonym</option>
+                            <option value="product">product</option>
+                            <option value="anticodon">anticodon</option>
+                            <option value="function">function</option>
+                            <option value="locus_tag">locus_tag</option>
+                            <option value="experiment">experiment</option>
+                            <option value="inference">inference</option>
+                            <option value="note">note</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="topology">topology</option>
+                            <option value="variety">variety</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                            <option value="study_accession">study_accession</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="rna_class">classification of RNA</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="assembly">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="sample_accession">sample_accession</option>
+                            <option value="assembly_name">assembly_name</option>
+                            <option value="assembly_title">assembly_title</option>
+                            <option value="study_name">study_name</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_description">study_description</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="strain">strain</option>
+                            <option value="base_count">base_count</option>
+                            <option value="assembly_level">assembly_level</option>
+                            <option value="genome_representation">genome_representation</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="assembly_name">genome assembly name for all live versions</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="study_description">detailed sequencing study description</option>
+                            <option value="accession">accession number</option>
+                            <option value="assembly_level">assembly level</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="assembly_title">brief genome assembly description</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="genome_representation">whether this is a full or partial genome</option>
+                            <option value="study_name">sequencing study name</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="sequence_release">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="topology">topology</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="plasmid">plasmid</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="wgs_set">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="set_files">set_files</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="accession">accession number</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="study">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="study_description">study_description</option>
+                            <option value="study_name">study_name</option>
+                            <option value="study_title">study_title</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="strain">strain</option>
+                            <option value="breed">breed</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="isolate">isolate</option>
+                            <option value="center_name">center_name</option>
+                            <option value="broker_name">broker_name</option>
+                            <option value="keywords">keywords</option>
+                            <option value="geo_accession">geo_accession</option>
+                            <option value="last_updated">last_updated</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="broker_name">broker name</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="study_description">detailed sequencing study description</option>
+                            <option value="breed">breed</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="study_name">sequencing study name</option>
+                            <option value="geo_accession">GEO accession</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="taxon">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="tax_id">tax_id</option>
+                            <option value="taxon_title">taxon_title</option>
+                            <option value="scientific_name">scientific_name</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="coding_release">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="allele">allele</option>
+                            <option value="artificial_location">artificial_location</option>
+                            <option value="codon_start">codon_start</option>
+                            <option value="ec_number">ec_number</option>
+                            <option value="exception">exception</option>
+                            <option value="experiment">experiment</option>
+                            <option value="function">function</option>
+                            <option value="topology">topology</option>
+                            <option value="gene">gene</option>
+                            <option value="gene_synonym">gene_synonym</option>
+                            <option value="inference">inference</option>
+                            <option value="locus_tag">locus_tag</option>
+                            <option value="map">map</option>
+                            <option value="note">note</option>
+                            <option value="old_locus_tag">old_locus_tag</option>
+                            <option value="operon">operon</option>
+                            <option value="partial">partial</option>
+                            <option value="product">product</option>
+                            <option value="protein_id">protein_id</option>
+                            <option value="pseudo">pseudo</option>
+                            <option value="pseudo_gene">pseudo_gene</option>
+                            <option value="ribosomal_slippage">ribosomal_slippage</option>
+                            <option value="standard_name">standard_name</option>
+                            <option value="trans_splicing">trans_splicing</option>
+                            <option value="transl_except">transl_except</option>
+                            <option value="transl_table">transl_table</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="parent_accession">parent_accession</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option>
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="transl_except">a single codon translation that does not conform to genetic code</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="pseudo_gene">indicates that this feature is a pseudogene</option>
+                            <option value="standard_name">accepted standard name for a feature</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="parent_accession">parent sequence accession number</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="sequence_md5"></option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="allele">name of the allele for the given gene</option>
+                            <option value="protein_id">a stable protein identifier issued by INSDC</option>
+                            <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option>
+                            <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="map">genomic map position of feature</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="pseudo">the feature is non-functional</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="sample">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="secondary_sample_accession">secondary_sample_accession</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="sample_alias">sample_alias</option>
+                            <option value="checklist">checklist</option>
+                            <option value="center_name">center_name</option>
+                            <option value="depth">depth</option>
+                            <option value="elevation">elevation</option>
+                            <option value="altitude">altitude</option>
+                            <option value="environment_biome">environment_biome</option>
+                            <option value="environment_feature">environment_feature</option>
+                            <option value="environment_material">environment_material</option>
+                            <option value="temperature">temperature</option>
+                            <option value="salinity">salinity</option>
+                            <option value="sampling_campaign">sampling_campaign</option>
+                            <option value="sampling_site">sampling_site</option>
+                            <option value="sampling_platform">sampling_platform</option>
+                            <option value="protocol_label">protocol_label</option>
+                            <option value="project_name">project_name</option>
+                            <option value="host">host</option>
+                            <option value="host_tax_id">host_tax_id</option>
+                            <option value="host_status">host_status</option>
+                            <option value="host_sex">host_sex</option>
+                            <option value="submitted_host_sex">submitted_host_sex</option>
+                            <option value="host_body_site">host_body_site</option>
+                            <option value="host_gravidity">host_gravidity</option>
+                            <option value="host_phenotype">host_phenotype</option>
+                            <option value="host_genotype">host_genotype</option>
+                            <option value="host_growth_conditions">host_growth_conditions</option>
+                            <option value="environmental_package">environmental_package</option>
+                            <option value="investigation_type">investigation_type</option>
+                            <option value="experimental_factor">experimental_factor</option>
+                            <option value="sample_collection">sample_collection</option>
+                            <option value="sequencing_method">sequencing_method</option>
+                            <option value="target_gene">target_gene</option>
+                            <option value="ph">ph</option>
+                            <option value="broker_name">broker_name</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="environment_material">Environment (Material)</option>
+                            <option value="host_sex">physical sex of the host</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="host_phenotype">phenotype of host</option>
+                            <option value="sampling_site">the site/station where this sample was collection</option>
+                            <option value="sequencing_method">sequencing method used</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="target_gene">targeted gene or locus name for marker gene studies</option>
+                            <option value="experimental_factor">variable aspects of the experimental design</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="temperature">Temperature (C)</option>
+                            <option value="sampling_platform">the large infrastructure from which this sample was collected</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="investigation_type">the study type targeted by the sequencing</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="protocol_label">the protocol used to produce the sample</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="host_genotype">genotype of host</option>
+                            <option value="ph">pH</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="project_name">name of the project within which the sequencing was organized</option>
+                            <option value="elevation">Elevation (m)</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="checklist">checklist name (or ID)</option>
+                            <option value="sampling_campaign">the activity within which this sample was collected</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="environment_biome">Environment (Biome)</option>
+                            <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="environment_feature">Environment (Feature)</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="salinity">Salinity (PSU)</option>
+                            <option value="host_status">condition of host (eg. diseased or healthy)</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="depth">Depth (m)</option>
+                            <option value="host_tax_id">NCBI taxon id of the host</option>
+                            <option value="host_body_site">name of body site from where the sample was obtained</option>
+                            <option value="host_growth_conditions">literature reference giving growth conditions of the host</option>
+                            <option value="sample_collection">the method or deviced employed for collecting the sample</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="environmental">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="secondary_sample_accession">secondary_sample_accession</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="marine_region">marine_region</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="first_public">first_public</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="location">location</option>
+                            <option value="strain">strain</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="sample_alias">sample_alias</option>
+                            <option value="checklist">checklist</option>
+                            <option value="center_name">center_name</option>
+                            <option value="depth">depth</option>
+                            <option value="elevation">elevation</option>
+                            <option value="altitude">altitude</option>
+                            <option value="environment_biome">environment_biome</option>
+                            <option value="environment_feature">environment_feature</option>
+                            <option value="environment_material">environment_material</option>
+                            <option value="temperature">temperature</option>
+                            <option value="salinity">salinity</option>
+                            <option value="sampling_campaign">sampling_campaign</option>
+                            <option value="sampling_site">sampling_site</option>
+                            <option value="sampling_platform">sampling_platform</option>
+                            <option value="protocol_label">protocol_label</option>
+                            <option value="project_name">project_name</option>
+                            <option value="host">host</option>
+                            <option value="host_tax_id">host_tax_id</option>
+                            <option value="host_status">host_status</option>
+                            <option value="host_sex">host_sex</option>
+                            <option value="submitted_host_sex">submitted_host_sex</option>
+                            <option value="host_body_site">host_body_site</option>
+                            <option value="host_gravidity">host_gravidity</option>
+                            <option value="host_phenotype">host_phenotype</option>
+                            <option value="host_genotype">host_genotype</option>
+                            <option value="host_growth_conditions">host_growth_conditions</option>
+                            <option value="environmental_package">environmental_package</option>
+                            <option value="investigation_type">investigation_type</option>
+                            <option value="experimental_factor">experimental_factor</option>
+                            <option value="sample_collection">sample_collection</option>
+                            <option value="sequencing_method">sequencing_method</option>
+                            <option value="target_gene">target_gene</option>
+                            <option value="ph">ph</option>
+                            <option value="broker_name">broker_name</option>
+                            <option value="event_label">event_label</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="environment_material">Environment (Material)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="event_label">label given to sampling event</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="accession">accession number</option>
+                            <option value="host_phenotype">phenotype of host</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="target_gene">targeted gene or locus name for marker gene studies</option>
+                            <option value="experimental_factor">variable aspects of the experimental design</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="temperature">Temperature (C)</option>
+                            <option value="sampling_platform">the large infrastructure from which this sample was collected</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="host_sex">physical sex of the host</option>
+                            <option value="investigation_type">the study type targeted by the sequencing</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="host_genotype">genotype of host</option>
+                            <option value="ph">pH</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="project_name">name of the project within which the sequencing was organized</option>
+                            <option value="elevation">Elevation (m)</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="checklist">checklist name (or ID)</option>
+                            <option value="sampling_campaign">the activity within which this sample was collected</option>
+                            <option value="protocol_label">the protocol used to produce the sample</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="sampling_site">the site/station where this sample was collection</option>
+                            <option value="host_tax_id">NCBI taxon id of the host</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="environment_biome">Environment (Biome)</option>
+                            <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option>
+                            <option value="marine_region">geographical origin of the sample as defined by the marine region</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="environment_feature">Environment (Feature)</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="salinity">Salinity (PSU)</option>
+                            <option value="host_status">condition of host (eg. diseased or healthy)</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="depth">Depth (m)</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="host_body_site">name of body site from where the sample was obtained</option>
+                            <option value="host_growth_conditions">literature reference giving growth conditions of the host</option>
+                            <option value="sample_collection">the method or deviced employed for collecting the sample</option>
+                            <option value="sequencing_method">sequencing method used</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="read_run">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="sample_accession">sample_accession</option>
+                            <option value="secondary_sample_accession">secondary_sample_accession</option>
+                            <option value="experiment_accession">experiment_accession</option>
+                            <option value="run_accession">run_accession</option>
+                            <option value="submission_accession">submission_accession</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="instrument_platform">instrument_platform</option>
+                            <option value="instrument_model">instrument_model</option>
+                            <option value="library_name">library_name</option>
+                            <option value="nominal_length">nominal_length</option>
+                            <option value="library_layout">library_layout</option>
+                            <option value="library_strategy">library_strategy</option>
+                            <option value="library_source">library_source</option>
+                            <option value="library_selection">library_selection</option>
+                            <option value="read_count">read_count</option>
+                            <option value="base_count">base_count</option>
+                            <option value="center_name">center_name</option>
+                            <option value="first_public">first_public</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="experiment_title">experiment_title</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_alias">study_alias</option>
+                            <option value="experiment_alias">experiment_alias</option>
+                            <option value="run_alias">run_alias</option>
+                            <option value="fastq_bytes">fastq_bytes</option>
+                            <option value="fastq_md5">fastq_md5</option>
+                            <option value="fastq_ftp">fastq_ftp</option>
+                            <option value="fastq_aspera">fastq_aspera</option>
+                            <option value="fastq_galaxy">fastq_galaxy</option>
+                            <option value="submitted_bytes">submitted_bytes</option>
+                            <option value="submitted_md5">submitted_md5</option>
+                            <option value="submitted_ftp">submitted_ftp</option>
+                            <option value="submitted_aspera">submitted_aspera</option>
+                            <option value="submitted_galaxy">submitted_galaxy</option>
+                            <option value="submitted_format">submitted_format</option>
+                            <option value="sra_bytes">sra_bytes</option>
+                            <option value="sra_md5">sra_md5</option>
+                            <option value="sra_ftp">sra_ftp</option>
+                            <option value="sra_aspera">sra_aspera</option>
+                            <option value="sra_galaxy">sra_galaxy</option>
+                            <option value="cram_index_ftp">cram_index_ftp</option>
+                            <option value="cram_index_aspera">cram_index_aspera</option>
+                            <option value="cram_index_galaxy">cram_index_galaxy</option>
+                            <option value="sample_alias">sample_alias</option>
+                            <option value="broker_name">broker_name</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="library_name">sequencing library name</option>
+                            <option value="read_count">number of reads</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="submission_accession">submission accession number</option>
+                            <option value="nominal_length">average fragmentation size of paired reads</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="run_accession">run accession number</option>
+                            <option value="library_selection">method used to select or enrich the material being sequenced</option>
+                            <option value="library_strategy">sequencing technique intended for the library</option>
+                            <option value="experiment_accession">experiment accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="submitted_format"></option>
+                            <option value="broker_name">broker name</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="run_alias">submitter's name for the run</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="library_layout">sequencing library layout</option>
+                            <option value="library_source">source material being sequenced</option>
+                            <option value="experiment_title">brief experiment title</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="instrument_platform">instrument platform used in sequencing experiment</option>
+                            <option value="instrument_model">instrument model used in sequencing experiment</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="experiment_alias">submitter's name for the experiment</option>
+                            <option value="study_title">brief sequencing study description</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="read_study">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_alias">study_alias</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="read_experiment">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="experiment_accession">experiment_accession</option>
+                            <option value="instrument_platform">instrument_platform</option>
+                            <option value="instrument_model">instrument_model</option>
+                            <option value="library_name">library_name</option>
+                            <option value="library_layout">library_layout</option>
+                            <option value="library_strategy">library_strategy</option>
+                            <option value="library_source">library_source</option>
+                            <option value="library_selection">library_selection</option>
+                            <option value="experiment_title">experiment_title</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_alias">study_alias</option>
+                            <option value="experiment_alias">experiment_alias</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="library_name">sequencing library name</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="instrument_platform">instrument platform used in sequencing experiment</option>
+                            <option value="instrument_model">instrument model used in sequencing experiment</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="experiment_alias">submitter's name for the experiment</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="library_selection">method used to select or enrich the material being sequenced</option>
+                            <option value="library_layout">sequencing library layout</option>
+                            <option value="library_strategy">sequencing technique intended for the library</option>
+                            <option value="experiment_accession">experiment accession number</option>
+                            <option value="library_source">source material being sequenced</option>
+                            <option value="experiment_title">brief experiment title</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="analysis">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="analysis_accession">analysis_accession</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="sample_accession">sample_accession</option>
+                            <option value="secondary_sample_accession">secondary_sample_accession</option>
+                            <option value="analysis_title">analysis_title</option>
+                            <option value="analysis_type">analysis_type</option>
+                            <option value="center_name">center_name</option>
+                            <option value="first_public">first_public</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="study_title">study_title</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="analysis_alias">analysis_alias</option>
+                            <option value="study_alias">study_alias</option>
+                            <option value="submitted_bytes">submitted_bytes</option>
+                            <option value="submitted_md5">submitted_md5</option>
+                            <option value="submitted_ftp">submitted_ftp</option>
+                            <option value="submitted_aspera">submitted_aspera</option>
+                            <option value="submitted_galaxy">submitted_galaxy</option>
+                            <option value="sample_alias">sample_alias</option>
+                            <option value="broker_name">broker_name</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="analysis_title">brief sequence analysis description</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="analysis_accession">analysis accession number</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="analysis_alias">submitter's name for the analysis</option>
+                            <option value="analysis_type">type of sequence analysis</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="sequence_update">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="topology">topology</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="plasmid">plasmid</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="coding_update">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="allele">allele</option>
+                            <option value="artificial_location">artificial_location</option>
+                            <option value="codon_start">codon_start</option>
+                            <option value="ec_number">ec_number</option>
+                            <option value="exception">exception</option>
+                            <option value="experiment">experiment</option>
+                            <option value="function">function</option>
+                            <option value="topology">topology</option>
+                            <option value="gene">gene</option>
+                            <option value="gene_synonym">gene_synonym</option>
+                            <option value="inference">inference</option>
+                            <option value="locus_tag">locus_tag</option>
+                            <option value="map">map</option>
+                            <option value="note">note</option>
+                            <option value="old_locus_tag">old_locus_tag</option>
+                            <option value="operon">operon</option>
+                            <option value="partial">partial</option>
+                            <option value="product">product</option>
+                            <option value="protein_id">protein_id</option>
+                            <option value="pseudo">pseudo</option>
+                            <option value="pseudo_gene">pseudo_gene</option>
+                            <option value="ribosomal_slippage">ribosomal_slippage</option>
+                            <option value="standard_name">standard_name</option>
+                            <option value="trans_splicing">trans_splicing</option>
+                            <option value="transl_except">transl_except</option>
+                            <option value="transl_table">transl_table</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="parent_accession">parent_accession</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option>
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="transl_except">a single codon translation that does not conform to genetic code</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="pseudo_gene">indicates that this feature is a pseudogene</option>
+                            <option value="standard_name">accepted standard name for a feature</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="parent_accession">parent sequence accession number</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="sequence_md5"></option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="allele">name of the allele for the given gene</option>
+                            <option value="protein_id">a stable protein identifier issued by INSDC</option>
+                            <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option>
+                            <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="map">genomic map position of feature</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="pseudo">the feature is non-functional</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="tsa_set">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="set_files">set_files</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="accession">accession number</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="analysis_study">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_alias">study_alias</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="noncoding_update">
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="first_public">first_public</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="rna_class">rna_class</option>
+                            <option value="gene">gene</option>
+                            <option value="gene_synonym">gene_synonym</option>
+                            <option value="product">product</option>
+                            <option value="anticodon">anticodon</option>
+                            <option value="function">function</option>
+                            <option value="locus_tag">locus_tag</option>
+                            <option value="experiment">experiment</option>
+                            <option value="inference">inference</option>
+                            <option value="note">note</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="topology">topology</option>
+                            <option value="variety">variety</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                            <option value="study_accession">study_accession</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="rna_class">classification of RNA</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+        </conditional>
+    </xml>
+    <xml name="conditional_text_search">
+        <conditional name="res">
+            <param argument="--result" type="select" label="Result to return">
+                <option value="noncoding_release">Non-coding sequences (Release)</option>
+                <option value="assembly">Genome assemblies</option>
+                <option value="sequence_release">Nucleotide sequences (Release)</option>
+                <option value="wgs_set">Genome assembly contig set</option>
+                <option value="study">Studies</option>
+                <option value="taxon">Taxonomic classification</option>
+                <option value="coding_release">Protein-coding sequences (Release)</option>
+                <option value="sample">Samples</option>
+                <option value="environmental">Environmental samples</option>
+                <option value="read_run">Raw reads</option>
+                <option value="read_study">Raw reads (grouped by study)</option>
+                <option value="read_experiment">Raw reads (grouped by experiment)</option>
+                <option value="analysis">Nucleotide sequence analyses from reads</option>
+                <option value="sequence_update">Nucleotide sequences (Update)</option>
+                <option value="coding_update">Protein-coding sequences (Update)</option>
+                <option value="tsa_set">Transcriptome assembly contig set</option>
+                <option value="analysis_study">Nucleotide sequence analyses from reads (grouped by study)</option>
+                <option value="noncoding_update">Non-coding sequences (Update)</option>
+            </param>
+            <when value="noncoding_release">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="rna_class">classification of RNA</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="mol_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="sequence_md5">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="inference">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="note">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="locus_tag">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="lab_host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tax_division">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="anticodon">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="experiment">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="function">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="product">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="base_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="topology">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="gene_synonym">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="organelle">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="rna_class">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="dataclass">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="gene">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="first_public">first_public</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="rna_class">rna_class</option>
+                            <option value="gene">gene</option>
+                            <option value="gene_synonym">gene_synonym</option>
+                            <option value="product">product</option>
+                            <option value="anticodon">anticodon</option>
+                            <option value="function">function</option>
+                            <option value="locus_tag">locus_tag</option>
+                            <option value="experiment">experiment</option>
+                            <option value="inference">inference</option>
+                            <option value="note">note</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="topology">topology</option>
+                            <option value="variety">variety</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                            <option value="study_accession">study_accession</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="rna_class">classification of RNA</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="assembly">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="assembly_name">genome assembly name for all live versions</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="study_description">detailed sequencing study description</option>
+                            <option value="accession">accession number</option>
+                            <option value="assembly_level">assembly level</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="assembly_title">brief genome assembly description</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="genome_representation">whether this is a full or partial genome</option>
+                            <option value="study_name">sequencing study name</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                        <when value="assembly_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="base_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="assembly_level">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sample_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="assembly_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="genome_representation">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="study_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="sample_accession">sample_accession</option>
+                            <option value="assembly_name">assembly_name</option>
+                            <option value="assembly_title">assembly_title</option>
+                            <option value="study_name">study_name</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_description">study_description</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="strain">strain</option>
+                            <option value="base_count">base_count</option>
+                            <option value="assembly_level">assembly_level</option>
+                            <option value="genome_representation">genome_representation</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="assembly_name">genome assembly name for all live versions</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="study_description">detailed sequencing study description</option>
+                            <option value="accession">accession number</option>
+                            <option value="assembly_level">assembly level</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="assembly_title">brief genome assembly description</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="genome_representation">whether this is a full or partial genome</option>
+                            <option value="study_name">sequencing study name</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="sequence_release">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="mol_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="sequence_md5">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="haplotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="lab_host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tax_division">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="altitude">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="base_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="topology">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="organelle">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="plasmid">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="dataclass">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="topology">topology</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="plasmid">plasmid</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="wgs_set">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="accession">accession number</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="mol_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="lab_host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="haplotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tax_division">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="altitude">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="set_files">set_files</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="accession">accession number</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="study">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="broker_name">broker name</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="study_description">detailed sequencing study description</option>
+                            <option value="breed">breed</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="study_name">sequencing study name</option>
+                            <option value="geo_accession">GEO accession</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                        <when value="broker_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="center_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="breed">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="geo_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="secondary_study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="study_description">study_description</option>
+                            <option value="study_name">study_name</option>
+                            <option value="study_title">study_title</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="strain">strain</option>
+                            <option value="breed">breed</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="isolate">isolate</option>
+                            <option value="center_name">center_name</option>
+                            <option value="broker_name">broker_name</option>
+                            <option value="keywords">keywords</option>
+                            <option value="geo_accession">geo_accession</option>
+                            <option value="last_updated">last_updated</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="broker_name">broker name</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="study_description">detailed sequencing study description</option>
+                            <option value="breed">breed</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="study_name">sequencing study name</option>
+                            <option value="geo_accession">GEO accession</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="taxon">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                        </param>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="tax_id">tax_id</option>
+                            <option value="taxon_title">taxon_title</option>
+                            <option value="scientific_name">scientific_name</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="coding_release">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option>
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="transl_except">a single codon translation that does not conform to genetic code</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="pseudo_gene">indicates that this feature is a pseudogene</option>
+                            <option value="standard_name">accepted standard name for a feature</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="parent_accession">parent sequence accession number</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="sequence_md5"></option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="allele">name of the allele for the given gene</option>
+                            <option value="protein_id">a stable protein identifier issued by INSDC</option>
+                            <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option>
+                            <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="map">genomic map position of feature</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="pseudo">the feature is non-functional</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="operon">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mol_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="lab_host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="transl_except">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="haplotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="trans_splicing">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="pseudo_gene">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="standard_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="inference">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="parent_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="locus_tag">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sequence_md5">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tax_division">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="old_locus_tag">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="altitude">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ec_number">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="note">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="experiment">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="allele">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="protein_id">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="partial">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="artificial_location">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="function">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="map">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="product">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="gene_synonym">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="exception">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="base_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="topology">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="pseudo">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="transl_table">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="organelle">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="ribosomal_slippage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="dataclass">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="gene">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="codon_start">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="allele">allele</option>
+                            <option value="artificial_location">artificial_location</option>
+                            <option value="codon_start">codon_start</option>
+                            <option value="ec_number">ec_number</option>
+                            <option value="exception">exception</option>
+                            <option value="experiment">experiment</option>
+                            <option value="function">function</option>
+                            <option value="topology">topology</option>
+                            <option value="gene">gene</option>
+                            <option value="gene_synonym">gene_synonym</option>
+                            <option value="inference">inference</option>
+                            <option value="locus_tag">locus_tag</option>
+                            <option value="map">map</option>
+                            <option value="note">note</option>
+                            <option value="old_locus_tag">old_locus_tag</option>
+                            <option value="operon">operon</option>
+                            <option value="partial">partial</option>
+                            <option value="product">product</option>
+                            <option value="protein_id">protein_id</option>
+                            <option value="pseudo">pseudo</option>
+                            <option value="pseudo_gene">pseudo_gene</option>
+                            <option value="ribosomal_slippage">ribosomal_slippage</option>
+                            <option value="standard_name">standard_name</option>
+                            <option value="trans_splicing">trans_splicing</option>
+                            <option value="transl_except">transl_except</option>
+                            <option value="transl_table">transl_table</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="parent_accession">parent_accession</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option>
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="transl_except">a single codon translation that does not conform to genetic code</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="pseudo_gene">indicates that this feature is a pseudogene</option>
+                            <option value="standard_name">accepted standard name for a feature</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="parent_accession">parent sequence accession number</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="sequence_md5"></option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="allele">name of the allele for the given gene</option>
+                            <option value="protein_id">a stable protein identifier issued by INSDC</option>
+                            <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option>
+                            <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="map">genomic map position of feature</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="pseudo">the feature is non-functional</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="sample">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="environment_material">Environment (Material)</option>
+                            <option value="host_sex">physical sex of the host</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="host_phenotype">phenotype of host</option>
+                            <option value="sampling_site">the site/station where this sample was collection</option>
+                            <option value="sequencing_method">sequencing method used</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="target_gene">targeted gene or locus name for marker gene studies</option>
+                            <option value="experimental_factor">variable aspects of the experimental design</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="temperature">Temperature (C)</option>
+                            <option value="sampling_platform">the large infrastructure from which this sample was collected</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="investigation_type">the study type targeted by the sequencing</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="protocol_label">the protocol used to produce the sample</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="host_genotype">genotype of host</option>
+                            <option value="ph">pH</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="project_name">name of the project within which the sequencing was organized</option>
+                            <option value="elevation">Elevation (m)</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="checklist">checklist name (or ID)</option>
+                            <option value="sampling_campaign">the activity within which this sample was collected</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="environment_biome">Environment (Biome)</option>
+                            <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="environment_feature">Environment (Feature)</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="salinity">Salinity (PSU)</option>
+                            <option value="host_status">condition of host (eg. diseased or healthy)</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="depth">Depth (m)</option>
+                            <option value="host_tax_id">NCBI taxon id of the host</option>
+                            <option value="host_body_site">name of body site from where the sample was obtained</option>
+                            <option value="host_growth_conditions">literature reference giving growth conditions of the host</option>
+                            <option value="sample_collection">the method or deviced employed for collecting the sample</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="secondary_sample_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environment_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host_sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="center_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="host_phenotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sampling_site">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sequencing_method">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="target_gene">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="experimental_factor">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="temperature">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="sampling_platform">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="altitude">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="investigation_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="protocol_label">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="host_genotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ph">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="broker_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="project_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="elevation">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sample_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="checklist">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sampling_campaign">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environment_biome">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_package">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="environment_feature">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="salinity">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="host_status">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="depth">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="host_tax_id">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="host_body_site">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host_growth_conditions">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sample_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="secondary_sample_accession">secondary_sample_accession</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="sample_alias">sample_alias</option>
+                            <option value="checklist">checklist</option>
+                            <option value="center_name">center_name</option>
+                            <option value="depth">depth</option>
+                            <option value="elevation">elevation</option>
+                            <option value="altitude">altitude</option>
+                            <option value="environment_biome">environment_biome</option>
+                            <option value="environment_feature">environment_feature</option>
+                            <option value="environment_material">environment_material</option>
+                            <option value="temperature">temperature</option>
+                            <option value="salinity">salinity</option>
+                            <option value="sampling_campaign">sampling_campaign</option>
+                            <option value="sampling_site">sampling_site</option>
+                            <option value="sampling_platform">sampling_platform</option>
+                            <option value="protocol_label">protocol_label</option>
+                            <option value="project_name">project_name</option>
+                            <option value="host">host</option>
+                            <option value="host_tax_id">host_tax_id</option>
+                            <option value="host_status">host_status</option>
+                            <option value="host_sex">host_sex</option>
+                            <option value="submitted_host_sex">submitted_host_sex</option>
+                            <option value="host_body_site">host_body_site</option>
+                            <option value="host_gravidity">host_gravidity</option>
+                            <option value="host_phenotype">host_phenotype</option>
+                            <option value="host_genotype">host_genotype</option>
+                            <option value="host_growth_conditions">host_growth_conditions</option>
+                            <option value="environmental_package">environmental_package</option>
+                            <option value="investigation_type">investigation_type</option>
+                            <option value="experimental_factor">experimental_factor</option>
+                            <option value="sample_collection">sample_collection</option>
+                            <option value="sequencing_method">sequencing_method</option>
+                            <option value="target_gene">target_gene</option>
+                            <option value="ph">ph</option>
+                            <option value="broker_name">broker_name</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="environment_material">Environment (Material)</option>
+                            <option value="host_sex">physical sex of the host</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="host_phenotype">phenotype of host</option>
+                            <option value="sampling_site">the site/station where this sample was collection</option>
+                            <option value="sequencing_method">sequencing method used</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="target_gene">targeted gene or locus name for marker gene studies</option>
+                            <option value="experimental_factor">variable aspects of the experimental design</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="temperature">Temperature (C)</option>
+                            <option value="sampling_platform">the large infrastructure from which this sample was collected</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="investigation_type">the study type targeted by the sequencing</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="protocol_label">the protocol used to produce the sample</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="host_genotype">genotype of host</option>
+                            <option value="ph">pH</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="project_name">name of the project within which the sequencing was organized</option>
+                            <option value="elevation">Elevation (m)</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="checklist">checklist name (or ID)</option>
+                            <option value="sampling_campaign">the activity within which this sample was collected</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="environment_biome">Environment (Biome)</option>
+                            <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="environment_feature">Environment (Feature)</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="salinity">Salinity (PSU)</option>
+                            <option value="host_status">condition of host (eg. diseased or healthy)</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="depth">Depth (m)</option>
+                            <option value="host_tax_id">NCBI taxon id of the host</option>
+                            <option value="host_body_site">name of body site from where the sample was obtained</option>
+                            <option value="host_growth_conditions">literature reference giving growth conditions of the host</option>
+                            <option value="sample_collection">the method or deviced employed for collecting the sample</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="environmental">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="environment_material">Environment (Material)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="event_label">label given to sampling event</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="accession">accession number</option>
+                            <option value="host_phenotype">phenotype of host</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="target_gene">targeted gene or locus name for marker gene studies</option>
+                            <option value="experimental_factor">variable aspects of the experimental design</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="temperature">Temperature (C)</option>
+                            <option value="sampling_platform">the large infrastructure from which this sample was collected</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="host_sex">physical sex of the host</option>
+                            <option value="investigation_type">the study type targeted by the sequencing</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="host_genotype">genotype of host</option>
+                            <option value="ph">pH</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="project_name">name of the project within which the sequencing was organized</option>
+                            <option value="elevation">Elevation (m)</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="checklist">checklist name (or ID)</option>
+                            <option value="sampling_campaign">the activity within which this sample was collected</option>
+                            <option value="protocol_label">the protocol used to produce the sample</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="sampling_site">the site/station where this sample was collection</option>
+                            <option value="host_tax_id">NCBI taxon id of the host</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="environment_biome">Environment (Biome)</option>
+                            <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option>
+                            <option value="marine_region">geographical origin of the sample as defined by the marine region</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="environment_feature">Environment (Feature)</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="salinity">Salinity (PSU)</option>
+                            <option value="host_status">condition of host (eg. diseased or healthy)</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="depth">Depth (m)</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="host_body_site">name of body site from where the sample was obtained</option>
+                            <option value="host_growth_conditions">literature reference giving growth conditions of the host</option>
+                            <option value="sample_collection">the method or deviced employed for collecting the sample</option>
+                            <option value="sequencing_method">sequencing method used</option>
+                        </param>
+                        <when value="secondary_sample_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environment_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="event_label">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="center_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host_phenotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="target_gene">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="experimental_factor">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="temperature">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="sampling_platform">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="altitude">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="host_sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="investigation_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="host_genotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ph">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="broker_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="project_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="elevation">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sample_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="checklist">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sampling_campaign">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="protocol_label">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sampling_site">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host_tax_id">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environment_biome">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_package">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="marine_region">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="environment_feature">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="salinity">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="host_status">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="depth">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host_body_site">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host_growth_conditions">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sample_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sequencing_method">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="secondary_sample_accession">secondary_sample_accession</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="marine_region">marine_region</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="first_public">first_public</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="location">location</option>
+                            <option value="strain">strain</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="sample_alias">sample_alias</option>
+                            <option value="checklist">checklist</option>
+                            <option value="center_name">center_name</option>
+                            <option value="depth">depth</option>
+                            <option value="elevation">elevation</option>
+                            <option value="altitude">altitude</option>
+                            <option value="environment_biome">environment_biome</option>
+                            <option value="environment_feature">environment_feature</option>
+                            <option value="environment_material">environment_material</option>
+                            <option value="temperature">temperature</option>
+                            <option value="salinity">salinity</option>
+                            <option value="sampling_campaign">sampling_campaign</option>
+                            <option value="sampling_site">sampling_site</option>
+                            <option value="sampling_platform">sampling_platform</option>
+                            <option value="protocol_label">protocol_label</option>
+                            <option value="project_name">project_name</option>
+                            <option value="host">host</option>
+                            <option value="host_tax_id">host_tax_id</option>
+                            <option value="host_status">host_status</option>
+                            <option value="host_sex">host_sex</option>
+                            <option value="submitted_host_sex">submitted_host_sex</option>
+                            <option value="host_body_site">host_body_site</option>
+                            <option value="host_gravidity">host_gravidity</option>
+                            <option value="host_phenotype">host_phenotype</option>
+                            <option value="host_genotype">host_genotype</option>
+                            <option value="host_growth_conditions">host_growth_conditions</option>
+                            <option value="environmental_package">environmental_package</option>
+                            <option value="investigation_type">investigation_type</option>
+                            <option value="experimental_factor">experimental_factor</option>
+                            <option value="sample_collection">sample_collection</option>
+                            <option value="sequencing_method">sequencing_method</option>
+                            <option value="target_gene">target_gene</option>
+                            <option value="ph">ph</option>
+                            <option value="broker_name">broker_name</option>
+                            <option value="event_label">event_label</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="environment_material">Environment (Material)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="event_label">label given to sampling event</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="accession">accession number</option>
+                            <option value="host_phenotype">phenotype of host</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="target_gene">targeted gene or locus name for marker gene studies</option>
+                            <option value="experimental_factor">variable aspects of the experimental design</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="temperature">Temperature (C)</option>
+                            <option value="sampling_platform">the large infrastructure from which this sample was collected</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="host_sex">physical sex of the host</option>
+                            <option value="investigation_type">the study type targeted by the sequencing</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="host_genotype">genotype of host</option>
+                            <option value="ph">pH</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="project_name">name of the project within which the sequencing was organized</option>
+                            <option value="elevation">Elevation (m)</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="checklist">checklist name (or ID)</option>
+                            <option value="sampling_campaign">the activity within which this sample was collected</option>
+                            <option value="protocol_label">the protocol used to produce the sample</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="sampling_site">the site/station where this sample was collection</option>
+                            <option value="host_tax_id">NCBI taxon id of the host</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="environment_biome">Environment (Biome)</option>
+                            <option value="environmental_package">MIGS/MIMS/MIMARKS extension for reporting (from environment where the sample was obtained)</option>
+                            <option value="marine_region">geographical origin of the sample as defined by the marine region</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="environment_feature">Environment (Feature)</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="salinity">Salinity (PSU)</option>
+                            <option value="host_status">condition of host (eg. diseased or healthy)</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="depth">Depth (m)</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="host_body_site">name of body site from where the sample was obtained</option>
+                            <option value="host_growth_conditions">literature reference giving growth conditions of the host</option>
+                            <option value="sample_collection">the method or deviced employed for collecting the sample</option>
+                            <option value="sequencing_method">sequencing method used</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="read_run">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="library_name">sequencing library name</option>
+                            <option value="read_count">number of reads</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="submission_accession">submission accession number</option>
+                            <option value="nominal_length">average fragmentation size of paired reads</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="run_accession">run accession number</option>
+                            <option value="library_selection">method used to select or enrich the material being sequenced</option>
+                            <option value="library_strategy">sequencing technique intended for the library</option>
+                            <option value="experiment_accession">experiment accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="submitted_format"></option>
+                            <option value="broker_name">broker name</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="run_alias">submitter's name for the run</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="library_layout">sequencing library layout</option>
+                            <option value="library_source">source material being sequenced</option>
+                            <option value="experiment_title">brief experiment title</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="instrument_platform">instrument platform used in sequencing experiment</option>
+                            <option value="instrument_model">instrument model used in sequencing experiment</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="experiment_alias">submitter's name for the experiment</option>
+                            <option value="study_title">brief sequencing study description</option>
+                        </param>
+                        <when value="secondary_sample_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="library_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="read_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="center_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="submission_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="nominal_length">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="base_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="run_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="library_selection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="library_strategy">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="experiment_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="submitted_format">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="broker_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sample_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="run_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="secondary_study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="library_layout">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="library_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="experiment_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="instrument_platform">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="instrument_model">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sample_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="experiment_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="sample_accession">sample_accession</option>
+                            <option value="secondary_sample_accession">secondary_sample_accession</option>
+                            <option value="experiment_accession">experiment_accession</option>
+                            <option value="run_accession">run_accession</option>
+                            <option value="submission_accession">submission_accession</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="instrument_platform">instrument_platform</option>
+                            <option value="instrument_model">instrument_model</option>
+                            <option value="library_name">library_name</option>
+                            <option value="nominal_length">nominal_length</option>
+                            <option value="library_layout">library_layout</option>
+                            <option value="library_strategy">library_strategy</option>
+                            <option value="library_source">library_source</option>
+                            <option value="library_selection">library_selection</option>
+                            <option value="read_count">read_count</option>
+                            <option value="base_count">base_count</option>
+                            <option value="center_name">center_name</option>
+                            <option value="first_public">first_public</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="experiment_title">experiment_title</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_alias">study_alias</option>
+                            <option value="experiment_alias">experiment_alias</option>
+                            <option value="run_alias">run_alias</option>
+                            <option value="fastq_bytes">fastq_bytes</option>
+                            <option value="fastq_md5">fastq_md5</option>
+                            <option value="fastq_ftp">fastq_ftp</option>
+                            <option value="fastq_aspera">fastq_aspera</option>
+                            <option value="fastq_galaxy">fastq_galaxy</option>
+                            <option value="submitted_bytes">submitted_bytes</option>
+                            <option value="submitted_md5">submitted_md5</option>
+                            <option value="submitted_ftp">submitted_ftp</option>
+                            <option value="submitted_aspera">submitted_aspera</option>
+                            <option value="submitted_galaxy">submitted_galaxy</option>
+                            <option value="submitted_format">submitted_format</option>
+                            <option value="sra_bytes">sra_bytes</option>
+                            <option value="sra_md5">sra_md5</option>
+                            <option value="sra_ftp">sra_ftp</option>
+                            <option value="sra_aspera">sra_aspera</option>
+                            <option value="sra_galaxy">sra_galaxy</option>
+                            <option value="cram_index_ftp">cram_index_ftp</option>
+                            <option value="cram_index_aspera">cram_index_aspera</option>
+                            <option value="cram_index_galaxy">cram_index_galaxy</option>
+                            <option value="sample_alias">sample_alias</option>
+                            <option value="broker_name">broker_name</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="library_name">sequencing library name</option>
+                            <option value="read_count">number of reads</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="submission_accession">submission accession number</option>
+                            <option value="nominal_length">average fragmentation size of paired reads</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="run_accession">run accession number</option>
+                            <option value="library_selection">method used to select or enrich the material being sequenced</option>
+                            <option value="library_strategy">sequencing technique intended for the library</option>
+                            <option value="experiment_accession">experiment accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="submitted_format"></option>
+                            <option value="broker_name">broker name</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="run_alias">submitter's name for the run</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="library_layout">sequencing library layout</option>
+                            <option value="library_source">source material being sequenced</option>
+                            <option value="experiment_title">brief experiment title</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="instrument_platform">instrument platform used in sequencing experiment</option>
+                            <option value="instrument_model">instrument model used in sequencing experiment</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="experiment_alias">submitter's name for the experiment</option>
+                            <option value="study_title">brief sequencing study description</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="read_study">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                        <when value="study_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="secondary_study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_alias">study_alias</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="read_experiment">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="library_name">sequencing library name</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="instrument_platform">instrument platform used in sequencing experiment</option>
+                            <option value="instrument_model">instrument model used in sequencing experiment</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="experiment_alias">submitter's name for the experiment</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="library_selection">method used to select or enrich the material being sequenced</option>
+                            <option value="library_layout">sequencing library layout</option>
+                            <option value="library_strategy">sequencing technique intended for the library</option>
+                            <option value="experiment_accession">experiment accession number</option>
+                            <option value="library_source">source material being sequenced</option>
+                            <option value="experiment_title">brief experiment title</option>
+                        </param>
+                        <when value="library_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="instrument_platform">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="instrument_model">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="study_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="experiment_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="secondary_study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="library_selection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="library_layout">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="library_strategy">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="experiment_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="library_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="experiment_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="experiment_accession">experiment_accession</option>
+                            <option value="instrument_platform">instrument_platform</option>
+                            <option value="instrument_model">instrument_model</option>
+                            <option value="library_name">library_name</option>
+                            <option value="library_layout">library_layout</option>
+                            <option value="library_strategy">library_strategy</option>
+                            <option value="library_source">library_source</option>
+                            <option value="library_selection">library_selection</option>
+                            <option value="experiment_title">experiment_title</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_alias">study_alias</option>
+                            <option value="experiment_alias">experiment_alias</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="library_name">sequencing library name</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="instrument_platform">instrument platform used in sequencing experiment</option>
+                            <option value="instrument_model">instrument model used in sequencing experiment</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="experiment_alias">submitter's name for the experiment</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="library_selection">method used to select or enrich the material being sequenced</option>
+                            <option value="library_layout">sequencing library layout</option>
+                            <option value="library_strategy">sequencing technique intended for the library</option>
+                            <option value="experiment_accession">experiment accession number</option>
+                            <option value="library_source">source material being sequenced</option>
+                            <option value="experiment_title">brief experiment title</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="analysis">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="analysis_title">brief sequence analysis description</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="analysis_accession">analysis accession number</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="analysis_alias">submitter's name for the analysis</option>
+                            <option value="analysis_type">type of sequence analysis</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                        </param>
+                        <when value="secondary_sample_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="broker_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="sample_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="center_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="analysis_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sample_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="analysis_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="secondary_study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="analysis_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="analysis_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="study_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="analysis_accession">analysis_accession</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="sample_accession">sample_accession</option>
+                            <option value="secondary_sample_accession">secondary_sample_accession</option>
+                            <option value="analysis_title">analysis_title</option>
+                            <option value="analysis_type">analysis_type</option>
+                            <option value="center_name">center_name</option>
+                            <option value="first_public">first_public</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="study_title">study_title</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="analysis_alias">analysis_alias</option>
+                            <option value="study_alias">study_alias</option>
+                            <option value="submitted_bytes">submitted_bytes</option>
+                            <option value="submitted_md5">submitted_md5</option>
+                            <option value="submitted_ftp">submitted_ftp</option>
+                            <option value="submitted_aspera">submitted_aspera</option>
+                            <option value="submitted_galaxy">submitted_galaxy</option>
+                            <option value="sample_alias">sample_alias</option>
+                            <option value="broker_name">broker_name</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="secondary_sample_accession">secondary sample accession number</option>
+                            <option value="broker_name">broker name</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="sample_alias">submitter's name for the sample</option>
+                            <option value="center_name">Submitting center</option>
+                            <option value="analysis_title">brief sequence analysis description</option>
+                            <option value="sample_accession">sample accession number</option>
+                            <option value="analysis_accession">analysis accession number</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="analysis_alias">submitter's name for the analysis</option>
+                            <option value="analysis_type">type of sequence analysis</option>
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="sequence_update">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="mol_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="sequence_md5">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="haplotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="lab_host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tax_division">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="altitude">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="base_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="topology">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="organelle">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="plasmid">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="dataclass">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="topology">topology</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="plasmid">plasmid</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="plasmid">name of naturally occurring plasmid from which the sequence was obtained</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="coding_update">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option>
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="transl_except">a single codon translation that does not conform to genetic code</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="pseudo_gene">indicates that this feature is a pseudogene</option>
+                            <option value="standard_name">accepted standard name for a feature</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="parent_accession">parent sequence accession number</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="sequence_md5"></option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="allele">name of the allele for the given gene</option>
+                            <option value="protein_id">a stable protein identifier issued by INSDC</option>
+                            <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option>
+                            <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="map">genomic map position of feature</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="pseudo">the feature is non-functional</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="operon">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mol_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="lab_host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="transl_except">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="haplotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="trans_splicing">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="pseudo_gene">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="standard_name">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="inference">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="parent_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="locus_tag">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sequence_md5">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tax_division">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="old_locus_tag">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="altitude">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ec_number">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="note">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="experiment">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="allele">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="protein_id">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="partial">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="artificial_location">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="function">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="map">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="product">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="gene_synonym">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="exception">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="base_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="topology">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="pseudo">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="transl_table">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="organelle">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="ribosomal_slippage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="dataclass">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="gene">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="codon_start">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="allele">allele</option>
+                            <option value="artificial_location">artificial_location</option>
+                            <option value="codon_start">codon_start</option>
+                            <option value="ec_number">ec_number</option>
+                            <option value="exception">exception</option>
+                            <option value="experiment">experiment</option>
+                            <option value="function">function</option>
+                            <option value="topology">topology</option>
+                            <option value="gene">gene</option>
+                            <option value="gene_synonym">gene_synonym</option>
+                            <option value="inference">inference</option>
+                            <option value="locus_tag">locus_tag</option>
+                            <option value="map">map</option>
+                            <option value="note">note</option>
+                            <option value="old_locus_tag">old_locus_tag</option>
+                            <option value="operon">operon</option>
+                            <option value="partial">partial</option>
+                            <option value="product">product</option>
+                            <option value="protein_id">protein_id</option>
+                            <option value="pseudo">pseudo</option>
+                            <option value="pseudo_gene">pseudo_gene</option>
+                            <option value="ribosomal_slippage">ribosomal_slippage</option>
+                            <option value="standard_name">standard_name</option>
+                            <option value="trans_splicing">trans_splicing</option>
+                            <option value="transl_except">transl_except</option>
+                            <option value="transl_table">transl_table</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="parent_accession">parent_accession</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="operon">name of the group of contiguous genes transcribed into a single transcript</option>
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="transl_except">a single codon translation that does not conform to genetic code</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="trans_splicing">indicates exons from two RNA molecules are ligated in intermolecular reaction to form mature RNA</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="pseudo_gene">indicates that this feature is a pseudogene</option>
+                            <option value="standard_name">accepted standard name for a feature</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="parent_accession">parent sequence accession number</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="sequence_md5"></option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="old_locus_tag">deprecated submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="ec_number">Enzyme Commission number for enzyme product of sequence</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="allele">name of the allele for the given gene</option>
+                            <option value="protein_id">a stable protein identifier issued by INSDC</option>
+                            <option value="partial">differentiates between complete regions and partial ones (deprecated qualifier)</option>
+                            <option value="artificial_location">indicates location is modified to adjust for the presence of a frameshift or internal stop codon</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="map">genomic map position of feature</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="exception">indicates that the coding region cannot be translated using standard biological rules</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="pseudo">the feature is non-functional</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="transl_table">indicates the genetic code table used if other than universal genetic code table</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="ribosomal_slippage">indicates ribosomal slippage (change to an alternative reading frame) during protein translation</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="codon_start">indicates the offset of the first complete codon relative to the first base of the coding feature</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="tsa_set">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="accession">accession number</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="mol_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="lab_host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="haplotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tax_division">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="altitude">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="first_public">first_public</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="variety">variety</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="altitude">altitude</option>
+                            <option value="haplotype">haplotype</option>
+                            <option value="study_accession">study_accession</option>
+                            <option value="set_files">set_files</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="haplotype">combination of alleles that are linked together on the same physical chromosome</option>
+                            <option value="accession">accession number</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="altitude">Altitude (m)</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="analysis_study">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                        <when value="study_title">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="secondary_study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_alias">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="study_accession">study_accession</option>
+                            <option value="secondary_study_accession">secondary_study_accession</option>
+                            <option value="study_title">study_title</option>
+                            <option value="study_alias">study_alias</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="study_title">brief sequencing study description</option>
+                            <option value="secondary_study_accession">project accession number</option>
+                            <option value="study_alias">submitter's name for the study</option>
+                            <option value="study_accession">study accession number</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+            <when value="noncoding_update">
+                <repeat name="queries" title="Add a query">
+                    <param name="combination_operation" type="select" label="Combination operation">
+                        <option value="AND">AND</option>
+                        <option value="OR">OR</option>
+                        <option value="NOT">NOT</option>
+                    </param>
+                    <conditional name="filter_field">
+                        <param name="field" type="select" label="Field to query">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="rna_class">classification of RNA</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                        <when value="mol_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="last_updated">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="sequence_md5">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="collected_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="serotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sex">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="keywords">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_line">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="inference">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="bio_material">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="identified_by">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="note">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="locus_tag">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="lab_host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tax_division">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="collection_date">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="specimen_voucher">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="dev_stage">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolate">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="anticodon">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="experiment">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="location">
+                            <conditional name="op">
+                                <param name="operation" type="select" label="Operation">
+                                    <option value="geo_box2">All locations within a box defined by a centre point and a radius in km.</option>
+                                    <option value="geo_box1">All locations within a box defined by the lower left (SW) and upper right (NE) points.</option>
+                                    <option value="geo_circ">All locations within a circle defined by a centre point and a radius in km.</option>
+                                    <option value="geo_lat">All locations within a latitude range given by a latitude and a radius in km.</option>
+                                    <option value="geo_south">All locations south of a given latitude (inclusive).</option>
+                                    <option value="geo_point">An exact lat/lon position</option>
+                                    <option value="geo_north">All locations north of a given latitude (inclusive).</option>
+                                </param>
+                                <when value="geo_box2">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_box1">
+                                    <param name="values" type="text" value="" label="south-west latitude, south-west longitude, north-east latitude, north-east longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_circ">
+                                    <param name="values" type="text" value="" label="latitude, longitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_lat">
+                                    <param name="values" type="text" value="" label="latitude, radius (km)" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_south">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_point">
+                                    <param name="values" type="text" value="" label="latitude, longitude" help="Values separated by simple comma"/>
+                                </when>
+                                <when value="geo_north">
+                                    <param name="values" type="text" value="" label="latitude" help="Values separated by simple comma"/>
+                                </when>
+                            </conditional>
+                        </when>
+                        <when value="study_accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="function">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="germline">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="product">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="description">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="ecotype">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cell_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="accession">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="isolation_source">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="mating_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_type">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="sub_strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="tissue_lib">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="cultivar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="base_count">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="float" value="" label="Any integer"/>
+                        </when>
+                        <when value="topology">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="sub_species">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="environmental_sample">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                            </param>
+                            <param name="value" type="select" label="Value">
+                                <option value="yes">yes</option>
+                                <option value="true">true</option>
+                                <option value="no">no</option>
+                                <option value="false">false</option>
+                            </param>
+                        </when>
+                        <when value="first_public">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                                <option value="lower">lower</option>
+                                <option value="equal or lower">equal or lower</option>
+                                <option value="higher">higher</option>
+                                <option value="equal or higher">equal or higher</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A date in the format YYYY-MM-DD"/>
+                        </when>
+                        <when value="strain">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="country">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="variety">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="host">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="gene_synonym">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="organelle">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="serovar">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="rna_class">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="dataclass">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="A text value from the controlled vocabulary enclosed in         double quotes"/>
+                        </when>
+                        <when value="gene">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                        <when value="culture_collection">
+                            <param name="operation" type="select" label="Operator">
+                                <option value="equal">equal</option>
+                                <option value="different">different</option>
+                            </param>
+                            <param name="value" type="text" value="" label="Any text value enclosed in double quotes. Wildcard (*) can         be used at the start and/or end of the text value."/>
+                        </when>
+                    </conditional>
+                </repeat>
+                <conditional name="display_opt">
+                    <param argument="--display" type="select" label="Display option to specify the display format">
+                        <expand macro="display_options"/>
+                    </param>
+                    <when value="xml">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="text">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="fastq"/>
+                    <when value="html">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                    </when>
+                    <when value="report">
+                        <param argument="--offset" type="integer" optional="true" label="First record to get"/>
+                        <param argument="--length" type="integer" optional="true" label="Number of records to retrieve"/>
+                        <param argument="--fields" type="select" multiple="true" label="Fields to return">
+                            <option value="accession">accession</option>
+                            <option value="base_count">base_count</option>
+                            <option value="collected_by">collected_by</option>
+                            <option value="dataclass">dataclass</option>
+                            <option value="first_public">first_public</option>
+                            <option value="last_updated">last_updated</option>
+                            <option value="location">location</option>
+                            <option value="tax_division">tax_division</option>
+                            <option value="tax_id">tax_id</option>
+                            <option value="scientific_name">scientific_name</option>
+                            <option value="rna_class">rna_class</option>
+                            <option value="gene">gene</option>
+                            <option value="gene_synonym">gene_synonym</option>
+                            <option value="product">product</option>
+                            <option value="anticodon">anticodon</option>
+                            <option value="function">function</option>
+                            <option value="locus_tag">locus_tag</option>
+                            <option value="experiment">experiment</option>
+                            <option value="inference">inference</option>
+                            <option value="note">note</option>
+                            <option value="bio_material">bio_material</option>
+                            <option value="cell_line">cell_line</option>
+                            <option value="cell_type">cell_type</option>
+                            <option value="country">country</option>
+                            <option value="cultivar">cultivar</option>
+                            <option value="culture_collection">culture_collection</option>
+                            <option value="description">description</option>
+                            <option value="dev_stage">dev_stage</option>
+                            <option value="ecotype">ecotype</option>
+                            <option value="environmental_sample">environmental_sample</option>
+                            <option value="germline">germline</option>
+                            <option value="host">host</option>
+                            <option value="identified_by">identified_by</option>
+                            <option value="isolate">isolate</option>
+                            <option value="isolation_source">isolation_source</option>
+                            <option value="keywords">keywords</option>
+                            <option value="lab_host">lab_host</option>
+                            <option value="mating_type">mating_type</option>
+                            <option value="mol_type">mol_type</option>
+                            <option value="organelle">organelle</option>
+                            <option value="serotype">serotype</option>
+                            <option value="serovar">serovar</option>
+                            <option value="sex">sex</option>
+                            <option value="collection_date">collection_date</option>
+                            <option value="submitted_sex">submitted_sex</option>
+                            <option value="specimen_voucher">specimen_voucher</option>
+                            <option value="strain">strain</option>
+                            <option value="sub_species">sub_species</option>
+                            <option value="sub_strain">sub_strain</option>
+                            <option value="tissue_lib">tissue_lib</option>
+                            <option value="tissue_type">tissue_type</option>
+                            <option value="topology">topology</option>
+                            <option value="variety">variety</option>
+                            <option value="sequence_md5">sequence_md5</option>
+                            <option value="study_accession">study_accession</option>
+                        </param>
+                        <param argument="--sortfields" type="select" optional="true" multiple="true" label="Fields to sort the results">
+                            <option value="mol_type">in vivo molecule type of the sequence</option>
+                            <option value="last_updated">date when last updated</option>
+                            <option value="sequence_md5"></option>
+                            <option value="collected_by">name of the person who collected the specimen</option>
+                            <option value="serotype">serological variety of a species characterized by its antigenic properties</option>
+                            <option value="sex">sex of the organism from which the sample was obtained</option>
+                            <option value="keywords">keywords associated with sequence</option>
+                            <option value="cell_line">cell line from which the sample was obtained</option>
+                            <option value="inference">a structured description of non-experimental evidence</option>
+                            <option value="bio_material">identifier for biological material including institute and collection code</option>
+                            <option value="identified_by">name of the taxonomist who identified the specimen</option>
+                            <option value="note">any comment or additional information</option>
+                            <option value="locus_tag">a submitter-supplied, systematic, stable identifier for a gene and its associated features</option>
+                            <option value="lab_host">scientific name of the laboratory host used to propagate the source organism for the sample</option>
+                            <option value="tax_division">taxonomic division</option>
+                            <option value="collection_date">date that the specimen was collected</option>
+                            <option value="specimen_voucher">identifier for the sample culture including institute and collection code</option>
+                            <option value="dev_stage">sample obtained from an organism in a specific developmental stage</option>
+                            <option value="isolate">individual isolate from which sample was obtained</option>
+                            <option value="anticodon">location of the anticodon of tRNA and the amino acid for which it codes</option>
+                            <option value="experiment">a brief description of the nature of the experimental evidence</option>
+                            <option value="location">geographic location of isolation of the sample</option>
+                            <option value="study_accession">study accession number</option>
+                            <option value="function">function attributed to a sequence</option>
+                            <option value="germline">the sample is an unrearranged molecule that was inherited from the parental germline</option>
+                            <option value="product">name of the product associated with the feature</option>
+                            <option value="description">brief sequence description</option>
+                            <option value="ecotype">a population within a given species displaying traits that reflect adaptation to a local habitat</option>
+                            <option value="cell_type">cell type from which the sample was obtained</option>
+                            <option value="accession">accession number</option>
+                            <option value="isolation_source">describes the physical, environmental and/or local geographical source of the sample</option>
+                            <option value="mating_type">mating type of the organism from which the sequence was obtained</option>
+                            <option value="tissue_type">tissue type from which the sample was obtained</option>
+                            <option value="sub_strain">name or identifier of a genetically or otherwise modified strain from which sample was obtained</option>
+                            <option value="tissue_lib">tissue library from which sample was obtained</option>
+                            <option value="cultivar">cultivar (cultivated variety) of plant from which sample was obtained</option>
+                            <option value="base_count">number of base pairs</option>
+                            <option value="topology">sequence topology: circular or linear</option>
+                            <option value="sub_species">name of sub-species of organism from which sample was obtained</option>
+                            <option value="environmental_sample">identifies sequences derived by direct molecular isolation from an environmental DNA sample</option>
+                            <option value="first_public">date when made public</option>
+                            <option value="strain">strain from which sample was obtained</option>
+                            <option value="country">locality of sample isolation: country names, oceans or seas, followed by regions and localities</option>
+                            <option value="variety">variety (varietas, a formal Linnaean rank) of organism from which sample was derived</option>
+                            <option value="host">natural (as opposed to laboratory) host to the organism from which sample was obtained</option>
+                            <option value="gene_synonym">synonymous, replaced, obsolete or former gene symbol</option>
+                            <option value="organelle">membrane-bound intracellular structure from which the sequence was obtained</option>
+                            <option value="serovar">serological variety of a species (usually a prokaryote) characterized by its antigenic properties</option>
+                            <option value="rna_class">classification of RNA</option>
+                            <option value="dataclass">sequence data class</option>
+                            <option value="gene">symbol of the gene corresponding to a sequence region</option>
+                            <option value="culture_collection">identifier for the sample culture including institute and collection code</option>
+                        </param>
+                    </when>
+                    <when value="fasta"/>
+                </conditional>
+            </when>
+        </conditional>
+    </xml>
+</macros>