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changeset 1:8a9a425f5c60 draft

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planemo upload for repository https://github.com/bluenote-1577/fairy commit 10bc95748dfd48b965a1732985e709b105ec0898
author iuc
date Mon, 03 Feb 2025 08:36:52 +0000
parents f2fd2d1b96e3
children d94e49509dac
files fairy_cov.xml macros.xml
diffstat 2 files changed, 5 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/fairy_cov.xml	Sun Jan 12 21:22:32 2025 +0000
+++ b/fairy_cov.xml	Mon Feb 03 08:36:52 2025 +0000
@@ -9,15 +9,12 @@
 
             #import re
 
-            #set $file = re.sub('[^\s\w\-\\.]', '_', str($contig.element_identifier))
-            #set $bcsp = re.sub('[^\s\w\-\\.]', '_', str($bcsp_file.element_identifier))
-
-            ln -s '$contig' '$file' &&
-            ln -s '$bcsp_file' '$bcsp' &&
+            ln -s '$contig' 'contig.fasta' &&
+            ln -s '$bcsp_file' 'sketched_file.bcsp' &&
 
             fairy coverage
-            '$file'
-            '$bcsp'
+            'contig.fasta'
+            'sketched_file.bcsp'
             -t "\${GALAXY_SLOTS:-3}"
             -m ${minimum_ani}
             -M ${min_number_kmers}
--- a/macros.xml	Sun Jan 12 21:22:32 2025 +0000
+++ b/macros.xml	Mon Feb 03 08:36:52 2025 +0000
@@ -6,7 +6,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.5.7</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">24.1</token>
     <xml name="citations">
         <citations>