Mercurial > repos > iuc > falco
annotate test-data/fastqc_contaminants.txt @ 1:da336e3ead38 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 22e3bc5d61cdfec9938d42062d0f03766768c93f
author | iuc |
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date | Mon, 17 Jun 2024 12:43:11 +0000 |
parents | e462044ece67 |
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e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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1 # This file contains a list of potential contaminants which are |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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2 # frequently found in high throughput sequencing reactions. These |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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3 # are mostly sequences of adapters / primers used in the various |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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4 # sequencing chemistries. |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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5 # |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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6 # Please DO NOT rely on these sequences to design your own oligos, some |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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7 # of them are truncated at ambiguous positions, and none of them are |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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8 # definitive sequences from the manufacturers so don't blame us if you |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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9 # try to use them and they don't work. |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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10 # |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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11 # You can add more sequences to the file by putting one line per entry |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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12 # and specifying a name[tab]sequence. If the contaminant you add is |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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13 # likely to be of use to others please consider sending it to the FastQ |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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14 # authors, either via a bug report at www.bioinformatics.bbsrc.ac.uk/bugzilla/ |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
iuc
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15 # or by directly emailing simon.andrews@bbsrc.ac.uk so other users of |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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16 # the program can benefit. |
e462044ece67
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
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17 TestContaminant ATGCATGCATGCATGCATGCATGC |