Mercurial > repos > iuc > falco
comparison test-data/adapter_list.txt @ 0:e462044ece67 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c
author | iuc |
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date | Tue, 04 Jun 2024 14:14:49 +0000 |
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1 # This file contains a set of sequence fragments which will be explicitly | |
2 # searched against your library. The reporting will be similar to the | |
3 # Kmer plot, except that every sequence in this list will be shown so | |
4 # you can use this to judge the level of adapter read-through even if those | |
5 # adapter sequences aren't picked out by the Kmer module. | |
6 # | |
7 # Since every sequence here will be analysed and the results plotted it | |
8 # doesn't make any sense to include duplicate sequences, or to add too | |
9 # many sequences since your plot will end up a mess. | |
10 # | |
11 # You can add more sequences to the file by putting one line per entry | |
12 # and specifying a name[tab]sequence. If the contaminant you add is | |
13 # likely to be of use to others please consider sending it to the FastQ | |
14 # authors, either via a bug report at www.bioinformatics.babraham.ac.uk/bugzilla/ | |
15 # or by directly emailing simon.andrews@babraham.ac.uk so other users of | |
16 # the program can benefit. | |
17 # | |
18 # For the time being it's going to be easier to interpret this plot if all | |
19 # of the sequences provided are the same length, so we've gone with 12bp | |
20 # fragments for now. | |
21 | |
22 Illumina Universal Adapter AGATCGGAAGAG | |
23 Illumina Small RNA 3 prime Adapter TGGAATTCTCGG | |
24 Illumina Small RNA 5 prime Adapter GATCGTCGGACT | |
25 Nextera Transposase Sequence CTGTCTCTTATA | |
26 SOLID Small RNA Adapter CGCCTTGGCCGT |