diff test-data/adapter_list.txt @ 0:e462044ece67 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco commit 8593dacde03b50726e9ca12fa15e4a104531708c

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/adapter_list.txt	Tue Jun 04 14:14:49 2024 +0000
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+# This file contains a set of sequence fragments which will be explicitly
+# searched against your library.  The reporting will be similar to the 
+# Kmer plot, except that every sequence in this list will be shown so 
+# you can use this to judge the level of adapter read-through even if those
+# adapter sequences aren't picked out by the Kmer module.
+#
+# Since every sequence here will be analysed and the results plotted it 
+# doesn't make any sense to include duplicate sequences, or to add too
+# many sequences since your plot will end up a mess.
+#
+# You can add more sequences to the file by putting one line per entry
+# and specifying a name[tab]sequence.  If the contaminant you add is 
+# likely to be of use to others please consider sending it to the FastQ
+# authors, either via a bug report at www.bioinformatics.babraham.ac.uk/bugzilla/
+# or by directly emailing [e-mail] so other users of
+# the program can benefit.
+#
+# For the time being it's going to be easier to interpret this plot if all
+# of the sequences provided are the same length, so we've gone with 12bp
+# fragments for now.
+
+Illumina Universal Adapter					AGATCGGAAGAG
+Illumina Small RNA 3 prime Adapter				TGGAATTCTCGG
+Illumina Small RNA 5 prime Adapter				GATCGTCGGACT
+Nextera Transposase Sequence				CTGTCTCTTATA
+SOLID Small RNA Adapter						CGCCTTGGCCGT