annotate macros.xml @ 0:e18c802858bb draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
author iuc
date Thu, 19 Jun 2025 21:51:44 +0000
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e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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1 <macros>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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2 <token name="@TOOL_VERSION@">1.0.0</token>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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3 <token name="@VERSION_SUFFIX@">0</token>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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4 <token name="@PROFILE@">23.0</token>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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5 <xml name="requirements">
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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6 <requirements>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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7 <requirement type="package" version="@TOOL_VERSION@">fastspar</requirement>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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8 </requirements>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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9 </xml>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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10 <xml name="requirements_pvalues">
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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11 <requirements>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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12 <requirement type="package" version="@TOOL_VERSION@">fastspar</requirement>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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13 <requirement type="package" version="20250422">parallel</requirement>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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14 </requirements>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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15 </xml>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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16
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17 <xml name="fastspar_tool_parameters">
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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18 <param argument="--iterations" type="integer" min="1" max="1000" value="50" label="Number of iterations"
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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19 help="Rounds of SparCC correlation estimation."/>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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20 <param argument="--exclude_iterations" type="integer" min="0" max="100" value="10" label="Number of exclusion iterations"
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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21 help="The number of times highly correlated OTU pairs are excluded."/>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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22 <param argument="--threshold" type="float" min="0.0" max="1.0" value="0.1" label="Exclusion threshold"
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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23 help="Correlation strength above which to exclude OTU pairs."/>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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24 </xml>
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25
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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26 <xml name="biotools">
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27 <xrefs>
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28 <xref type="bio.tools">FastSpar</xref>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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29 </xrefs>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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30 </xml>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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31 <xml name="citations">
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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32 <citations>
e18c802858bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
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33 <citation type="doi">10.1093/bioinformatics/bty734</citation>
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34 <citation type="doi">10.1371/journal.pcbi.1002687</citation>
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35 </citations>
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36 </xml>
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37 </macros>