Mercurial > repos > iuc > fastspar_reduce
annotate macros.xml @ 0:e18c802858bb draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
| author | iuc |
|---|---|
| date | Thu, 19 Jun 2025 21:51:44 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
|
0
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
1 <macros> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
2 <token name="@TOOL_VERSION@">1.0.0</token> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
3 <token name="@VERSION_SUFFIX@">0</token> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
4 <token name="@PROFILE@">23.0</token> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
5 <xml name="requirements"> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
6 <requirements> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
7 <requirement type="package" version="@TOOL_VERSION@">fastspar</requirement> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
8 </requirements> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
9 </xml> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
10 <xml name="requirements_pvalues"> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
11 <requirements> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
12 <requirement type="package" version="@TOOL_VERSION@">fastspar</requirement> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
13 <requirement type="package" version="20250422">parallel</requirement> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
14 </requirements> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
15 </xml> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
16 |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
17 <xml name="fastspar_tool_parameters"> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
18 <param argument="--iterations" type="integer" min="1" max="1000" value="50" label="Number of iterations" |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
19 help="Rounds of SparCC correlation estimation."/> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
20 <param argument="--exclude_iterations" type="integer" min="0" max="100" value="10" label="Number of exclusion iterations" |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
21 help="The number of times highly correlated OTU pairs are excluded."/> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
22 <param argument="--threshold" type="float" min="0.0" max="1.0" value="0.1" label="Exclusion threshold" |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
23 help="Correlation strength above which to exclude OTU pairs."/> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
24 </xml> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
25 |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
26 <xml name="biotools"> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
27 <xrefs> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
28 <xref type="bio.tools">FastSpar</xref> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
29 </xrefs> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
30 </xml> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
31 <xml name="citations"> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
32 <citations> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
33 <citation type="doi">10.1093/bioinformatics/bty734</citation> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
34 <citation type="doi">10.1371/journal.pcbi.1002687</citation> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
35 </citations> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
36 </xml> |
|
e18c802858bb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
iuc
parents:
diff
changeset
|
37 </macros> |
