Mercurial > repos > iuc > fastspar_reduce
diff macros.xml @ 0:e18c802858bb draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar commit 0e305d21d0634a1788b9105ec4d0ab1c2da62359
| author | iuc |
|---|---|
| date | Thu, 19 Jun 2025 21:51:44 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Jun 19 21:51:44 2025 +0000 @@ -0,0 +1,37 @@ +<macros> + <token name="@TOOL_VERSION@">1.0.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">23.0</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">fastspar</requirement> + </requirements> + </xml> + <xml name="requirements_pvalues"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">fastspar</requirement> + <requirement type="package" version="20250422">parallel</requirement> + </requirements> + </xml> + + <xml name="fastspar_tool_parameters"> + <param argument="--iterations" type="integer" min="1" max="1000" value="50" label="Number of iterations" + help="Rounds of SparCC correlation estimation."/> + <param argument="--exclude_iterations" type="integer" min="0" max="100" value="10" label="Number of exclusion iterations" + help="The number of times highly correlated OTU pairs are excluded."/> + <param argument="--threshold" type="float" min="0.0" max="1.0" value="0.1" label="Exclusion threshold" + help="Correlation strength above which to exclude OTU pairs."/> + </xml> + + <xml name="biotools"> + <xrefs> + <xref type="bio.tools">FastSpar</xref> + </xrefs> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1093/bioinformatics/bty734</citation> + <citation type="doi">10.1371/journal.pcbi.1002687</citation> + </citations> + </xml> +</macros> \ No newline at end of file
