Mercurial > repos > iuc > featurecounts
comparison featurecounts.xml @ 21:c946f28be33b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit a956e32b176d645db54db3c86586cc0bfa2fbd3c
| author | iuc |
|---|---|
| date | Fri, 04 Jan 2019 06:29:41 -0500 |
| parents | 1759d845181e |
| children | af814359d244 |
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| 20:1759d845181e | 21:c946f28be33b |
|---|---|
| 1 <tool id="featurecounts" name="featureCounts" version="1.6.3" profile="16.04"> | 1 <tool id="featurecounts" name="featureCounts" version="1.6.3+galaxy1" profile="16.04"> |
| 2 <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description> | 2 <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.6.2">subread</requirement> | 4 <requirement type="package" version="1.6.3">subread</requirement> |
| 5 <requirement type="package" version="1.7">samtools</requirement> | 5 <requirement type="package" version="1.9">samtools</requirement> |
| 6 <requirement type="package" version="3.0.5">paste</requirement> | |
| 6 </requirements> | 7 </requirements> |
| 7 | 8 |
| 8 <version_command>featureCounts -v 2>&1 | grep .</version_command> | 9 <version_command>featureCounts -v 2>&1 | grep .</version_command> |
| 9 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
| 10 | 11 |
| 551 <param name="anno_select" value="history" /> | 552 <param name="anno_select" value="history" /> |
| 552 <param name="reference_gene_sets" value="small.gtf" ftype="gtf" /> | 553 <param name="reference_gene_sets" value="small.gtf" ftype="gtf" /> |
| 553 <section name="extended_parameters" > | 554 <section name="extended_parameters" > |
| 554 <param name="R" value="true" /> | 555 <param name="R" value="true" /> |
| 555 </section> | 556 </section> |
| 556 <output name="output_bam" value="subset.sorted.featurecounts.bam" /> | 557 <output name="output_bam" value="subset.sorted.featurecounts.bam" compare="sim_size"/> |
| 557 </test> | 558 </test> |
| 558 </tests> | 559 </tests> |
| 559 | 560 |
| 560 <help><![CDATA[ | 561 <help><![CDATA[ |
| 561 featureCounts | 562 featureCounts |