Mercurial > repos > iuc > featurecounts

changeset 21:c946f28be33b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit a956e32b176d645db54db3c86586cc0bfa2fbd3c
author iuc
date Fri, 04 Jan 2019 06:29:41 -0500
parents 1759d845181e
children af814359d244
files featurecounts.xml
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/featurecounts.xml	Tue Sep 25 04:28:33 2018 -0400
+++ b/featurecounts.xml	Fri Jan 04 06:29:41 2019 -0500
@@ -1,8 +1,9 @@
-<tool id="featurecounts" name="featureCounts" version="1.6.3" profile="16.04">
+<tool id="featurecounts" name="featureCounts" version="1.6.3+galaxy1" profile="16.04">
     <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description>
     <requirements>
-        <requirement type="package" version="1.6.2">subread</requirement>
-        <requirement type="package" version="1.7">samtools</requirement>
+        <requirement type="package" version="1.6.3">subread</requirement>
+        <requirement type="package" version="1.9">samtools</requirement>
+        <requirement type="package" version="3.0.5">paste</requirement>
     </requirements>
 
     <version_command>featureCounts -v 2&gt;&amp;1 | grep .</version_command>
@@ -553,7 +554,7 @@
             <section name="extended_parameters" >
                 <param name="R" value="true" />
             </section>
-            <output name="output_bam" value="subset.sorted.featurecounts.bam" />
+            <output name="output_bam" value="subset.sorted.featurecounts.bam" compare="sim_size"/>
         </test>
     </tests>