changeset 26:ea04b737afa0 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit 34edb37978466203f104fbd6eb394ad9e560f859"
author iuc
date Sat, 21 Nov 2020 10:22:09 +0000
parents 90d16db017d7
children ce44c6f2ba38
files featurecounts.xml test-data/output.bam test-data/output_1_summary.tab test-data/output_summary_builtin_hg19.tab test-data/subset.sorted.featurecounts.bam
diffstat 5 files changed, 7 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/featurecounts.xml	Fri Aug 14 04:28:55 2020 -0400
+++ b/featurecounts.xml	Sat Nov 21 10:22:09 2020 +0000
@@ -1,8 +1,8 @@
-<tool id="featurecounts" name="featureCounts" version="1.6.4+galaxy2" profile="16.04">
+<tool id="featurecounts" name="featureCounts" version="2.0.1" profile="16.04">
     <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description>
     <requirements>
-        <requirement type="package" version="1.6.4">subread</requirement>
-        <requirement type="package" version="1.9">samtools</requirement>
+        <requirement type="package" version="2.0.1">subread</requirement>
+        <requirement type="package" version="1.11">samtools</requirement>
         <requirement type="package" version="8.31">coreutils</requirement>
     </requirements>
 
Binary file test-data/output.bam has changed
--- a/test-data/output_1_summary.tab	Fri Aug 14 04:28:55 2020 -0400
+++ b/test-data/output_1_summary.tab	Sat Nov 21 10:22:09 2020 +0000
@@ -1,6 +1,8 @@
 Status	featureCounts_input1.bam
 Assigned	158
 Unassigned_Unmapped	0
+Unassigned_Read_Type	0
+Unassigned_Singleton	0
 Unassigned_MappingQuality	0
 Unassigned_Chimera	0
 Unassigned_FragmentLength	0
--- a/test-data/output_summary_builtin_hg19.tab	Fri Aug 14 04:28:55 2020 -0400
+++ b/test-data/output_summary_builtin_hg19.tab	Sat Nov 21 10:22:09 2020 +0000
@@ -1,6 +1,8 @@
 Status	pairend_strandspecific_51mer_hg19_chr1_1-100000.bam
 Assigned	3
 Unassigned_Unmapped	0
+Unassigned_Read_Type	0
+Unassigned_Singleton	0
 Unassigned_MappingQuality	0
 Unassigned_Chimera	0
 Unassigned_FragmentLength	0
Binary file test-data/subset.sorted.featurecounts.bam has changed