Mercurial > repos > iuc > featurecounts
changeset 26:ea04b737afa0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit 34edb37978466203f104fbd6eb394ad9e560f859"
| author | iuc |
|---|---|
| date | Sat, 21 Nov 2020 10:22:09 +0000 |
| parents | 90d16db017d7 |
| children | ce44c6f2ba38 |
| files | featurecounts.xml test-data/output.bam test-data/output_1_summary.tab test-data/output_summary_builtin_hg19.tab test-data/subset.sorted.featurecounts.bam |
| diffstat | 5 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/featurecounts.xml Fri Aug 14 04:28:55 2020 -0400 +++ b/featurecounts.xml Sat Nov 21 10:22:09 2020 +0000 @@ -1,8 +1,8 @@ -<tool id="featurecounts" name="featureCounts" version="1.6.4+galaxy2" profile="16.04"> +<tool id="featurecounts" name="featureCounts" version="2.0.1" profile="16.04"> <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description> <requirements> - <requirement type="package" version="1.6.4">subread</requirement> - <requirement type="package" version="1.9">samtools</requirement> + <requirement type="package" version="2.0.1">subread</requirement> + <requirement type="package" version="1.11">samtools</requirement> <requirement type="package" version="8.31">coreutils</requirement> </requirements>
--- a/test-data/output_1_summary.tab Fri Aug 14 04:28:55 2020 -0400 +++ b/test-data/output_1_summary.tab Sat Nov 21 10:22:09 2020 +0000 @@ -1,6 +1,8 @@ Status featureCounts_input1.bam Assigned 158 Unassigned_Unmapped 0 +Unassigned_Read_Type 0 +Unassigned_Singleton 0 Unassigned_MappingQuality 0 Unassigned_Chimera 0 Unassigned_FragmentLength 0
--- a/test-data/output_summary_builtin_hg19.tab Fri Aug 14 04:28:55 2020 -0400 +++ b/test-data/output_summary_builtin_hg19.tab Sat Nov 21 10:22:09 2020 +0000 @@ -1,6 +1,8 @@ Status pairend_strandspecific_51mer_hg19_chr1_1-100000.bam Assigned 3 Unassigned_Unmapped 0 +Unassigned_Read_Type 0 +Unassigned_Singleton 0 Unassigned_MappingQuality 0 Unassigned_Chimera 0 Unassigned_FragmentLength 0