annotate test-data/psm_report.tsv @ 13:4d5aae46f850 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
author iuc
date Thu, 19 Aug 2021 19:39:58 +0000
parents cd2a99849f8b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
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1 Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
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2 1 NP_116558 PYANQPTVR M IT 2 NH2-PYANQPTVR-COOH trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.04679.04679.2 4679 -1.0 523.272583 2+ 2+ 1044.53524305008 0 -4.4240452979909675 100.0 Doubtful
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
diff changeset
3 2 NP_443137, NP_443137_S1016F DANTQVHTLR YK; YK KM; KM 443; 443 NH2-DANTQVHTLR-COOH trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.03894.03894.2 3894 -1.0 577.799622 2+ 2+ 1153.5839841476504 0 0.6117338355350196 95.0 Doubtful
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
diff changeset
4 3 NP_066544_R21W SSWAGLQFPVGR TR VH 19 NH2-SSWAGLQFPVGR-COOH trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.20932.20932.2 20932 -1.0 652.843567 2+ 2+ 1303.6673198487902 0 4.029478922381296 100.0 Doubtful
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
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5 4 NP_112092_rs7285167:R182C AQACNLDQSGTNVAK AR VM 179 NH2-AQAC<cmm>NLDQSGTNVAK-COOH Carbamidomethylation of C(4) trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.05257.05257.2 5257 -1.0 788.87384 2+ 2+ 1575.7311189571503 0 1.2727711831177586 100.0 Doubtful
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
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6 5 NP_001273432_F75C, NP_001273433_F77C, NP_001273434_F77C, NP_006635_F75C ACNDPFIQK GR; GR; GR; GR EK; EK; EK; EK 74; 76; 76; 74 NH2-AC<cmm>NDPFIQK-COOH Carbamidomethylation of C(2) trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.09560.09560.2 9560 -1.0 546.760803 2+ 2+ 1091.50697969691 0 0.06709466946167521 94.73684210526316 Doubtful
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
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7 6 NP_001028196, NP_001244919, NP_036311 LQLLPESFICK KR; KR; KR EK; EK; EK 198; 163; 277 NH2-LQLLPESFIC<cmm>K-COOH Carbamidomethylation of C(10) trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.22345.22345.2 22345 -1.0 674.370911 2+ 2+ 1346.7268088708604 0 0.3412036795550375 99.38650306748467 Doubtful
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
diff changeset
8 7 NP_001909_rs72973763:I239V,rs12021720:S384G DMTVPVLVSKPPVFTGK PK DK 234 NH2-DMTVPVLVSKPPVFTGK-COOH trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.20464.20464.2 20464 -1.0 908.008545 2+ 2+ 1814.0011927988103 0 0.7402290254293575 94.73684210526316 Doubtful
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
diff changeset
9 8 NP_001265138, NP_001265138_rs2274136:A858T,F879L, NP_001265139, NP_001265139_rs2274136:A785T,F806L, NP_005115, NP_005115_rs2274136:A827T,F848L FGVSSESKPEEVK FK; FK; FK; FK; FK; FK KD; KD; KD; KD; KD; KD 992; 992; 919; 919; 961; 961 NH2-FGVSSESKPEEVK-COOH trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.06665.06665.2 6665 -1.0 711.858643 2+ 2+ 1421.7038244968105 0 -0.7666055674357796 100.0 Doubtful