view test-data/psm_report.tsv @ 13:4d5aae46f850 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
author iuc
date Thu, 19 Aug 2021 19:39:58 +0000
parents cd2a99849f8b
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	Protein(s)	Sequence	AAs Before	AAs After	Position	Modified Sequence	Variable Modifications	Fixed Modifications	Spectrum File	Spectrum Title	Spectrum Scan Number	RT	m/z	Measured Charge	Identification Charge	Theoretical Mass	Isotope Number	Precursor m/z Error [ppm]	Localization Confidence	Probabilistic PTM score	D-score	Confidence [%]	Validation
1	NP_116558	PYANQPTVR	M	IT	2	NH2-PYANQPTVR-COOH			trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf	tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.04679.04679.2	4679	-1.0	523.272583	2+	2+	1044.53524305008	0	-4.4240452979909675				100.0	Doubtful
2	NP_443137, NP_443137_S1016F	DANTQVHTLR	YK; YK	KM; KM	443; 443	NH2-DANTQVHTLR-COOH			trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf	tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.03894.03894.2	3894	-1.0	577.799622	2+	2+	1153.5839841476504	0	0.6117338355350196				95.0	Doubtful
3	NP_066544_R21W	SSWAGLQFPVGR	TR	VH	19	NH2-SSWAGLQFPVGR-COOH			trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf	tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.20932.20932.2	20932	-1.0	652.843567	2+	2+	1303.6673198487902	0	4.029478922381296				100.0	Doubtful
4	NP_112092_rs7285167:R182C	AQACNLDQSGTNVAK	AR	VM	179	NH2-AQAC<cmm>NLDQSGTNVAK-COOH		Carbamidomethylation of C(4)	trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf	tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.05257.05257.2	5257	-1.0	788.87384	2+	2+	1575.7311189571503	0	1.2727711831177586				100.0	Doubtful
5	NP_001273432_F75C, NP_001273433_F77C, NP_001273434_F77C, NP_006635_F75C	ACNDPFIQK	GR; GR; GR; GR	EK; EK; EK; EK	74; 76; 76; 74	NH2-AC<cmm>NDPFIQK-COOH		Carbamidomethylation of C(2)	trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf	tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.09560.09560.2	9560	-1.0	546.760803	2+	2+	1091.50697969691	0	0.06709466946167521				94.73684210526316	Doubtful
6	NP_001028196, NP_001244919, NP_036311	LQLLPESFICK	KR; KR; KR	EK; EK; EK	198; 163; 277	NH2-LQLLPESFIC<cmm>K-COOH		Carbamidomethylation of C(10)	trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf	tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.22345.22345.2	22345	-1.0	674.370911	2+	2+	1346.7268088708604	0	0.3412036795550375				99.38650306748467	Doubtful
7	NP_001909_rs72973763:I239V,rs12021720:S384G	DMTVPVLVSKPPVFTGK	PK	DK	234	NH2-DMTVPVLVSKPPVFTGK-COOH			trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf	tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.20464.20464.2	20464	-1.0	908.008545	2+	2+	1814.0011927988103	0	0.7402290254293575				94.73684210526316	Doubtful
8	NP_001265138, NP_001265138_rs2274136:A858T,F879L, NP_001265139, NP_001265139_rs2274136:A785T,F806L, NP_005115, NP_005115_rs2274136:A827T,F848L	FGVSSESKPEEVK	FK; FK; FK; FK; FK; FK	KD; KD; KD; KD; KD; KD	992; 992; 919; 919; 961; 961	NH2-FGVSSESKPEEVK-COOH			trimmed_tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.mgf	tgriffin_cguerrer_20150826_RP_MCF7_hipH_frac_12n28.06665.06665.2	6665	-1.0	711.858643	2+	2+	1421.7038244968105	0	-0.7666055674357796				100.0	Doubtful