annotate tool-data/twobit.loc.sample @ 0:14f4c7a8a962 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
author iuc
date Mon, 11 Apr 2022 20:37:19 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that is used by some
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
2 #tools. The twobit.loc file has this format (white space characters
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
3 #are TAB characters):
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
4 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
5 #<Build> <FullPathToFile>
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
6 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
7 #So, for example, if you had droPer1 twobit files stored in
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
8 #/depot/data2/galaxy/droPer1/, then the twobit.loc entry
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
9 #would look like this:
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
10 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
11 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
12 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
13 #and your /depot/data2/galaxy/droPer1/ directory would
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
14 #contain all of your twobit files (e.g.):
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
15 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
16 #-rw-rw-r-- 1 nate galaxy 48972650 2007-05-04 11:27 droPer1.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
17 #...etc...
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
18 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
19 #Your twobit.loc file should include an entry per line for each twobit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
20 #file you have stored. For example:
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
21 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
22 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
23 #apiMel2 /depot/data2/galaxy/apiMel2/apiMel2.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
24 #droAna1 /depot/data2/galaxy/droAna1/droAna1.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
25 #droAna2 /depot/data2/galaxy/droAna2/droAna2.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
parents:
diff changeset
26 #...etc...