Mercurial > repos > iuc > funannotate_clean

view test-data/predict_scratch/Genus_species.tbl @ 10:1691af4a0d17 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit cb8c31569524d18872950ac43d389bf6c6931a3c
author iuc
date Mon, 11 Dec 2023 19:17:19 +0000
parents b5ec3983deda
children
line wrap: on
line source

>Feature sample
1	215740	REFERENCE
			CFMR	12345
1466	1092	gene
			locus_tag	FUN_000001
1466	1092	mRNA
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
			protein_id	gnl|ncbi|FUN_000001-T1
1466	1092	CDS
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
			protein_id	gnl|ncbi|FUN_000001-T1
3142	2565	gene
			locus_tag	FUN_000002
3142	3138	mRNA
3004	2883
2686	2565
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
			protein_id	gnl|ncbi|FUN_000002-T1
3142	3138	CDS
3004	2883
2686	2565
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
			protein_id	gnl|ncbi|FUN_000002-T1
5802	4248	gene
			locus_tag	FUN_000003
5802	5797	mRNA
5539	4937
4742	4248
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
			protein_id	gnl|ncbi|FUN_000003-T1
5802	5797	CDS
5539	4937
4742	4248
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
			protein_id	gnl|ncbi|FUN_000003-T1
10664	7691	gene
			locus_tag	FUN_000004
10664	10657	mRNA
10499	8707
8385	7691
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
			protein_id	gnl|ncbi|FUN_000004-T1
10664	10657	CDS
10499	8707
8385	7691
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
			protein_id	gnl|ncbi|FUN_000004-T1
15214	14247	gene
			locus_tag	FUN_000005
15214	15209	mRNA
14648	14247
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
			protein_id	gnl|ncbi|FUN_000005-T1
15214	15209	CDS
14648	14247
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
			protein_id	gnl|ncbi|FUN_000005-T1
15539	16619	gene
			locus_tag	FUN_000006
15539	15543	mRNA
15646	15919
16485	16619
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
			protein_id	gnl|ncbi|FUN_000006-T1
15539	15543	CDS
15646	15919
16485	16619
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
			protein_id	gnl|ncbi|FUN_000006-T1
21705	18358	gene
			locus_tag	FUN_000007
21705	21700	mRNA
21515	19638
19482	18358
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
			protein_id	gnl|ncbi|FUN_000007-T1
21705	21700	CDS
21515	19638
19482	18358
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
			protein_id	gnl|ncbi|FUN_000007-T1
35679	34843	gene
			locus_tag	FUN_000008
35679	34843	mRNA
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
			protein_id	gnl|ncbi|FUN_000008-T1
35679	34843	CDS
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
			protein_id	gnl|ncbi|FUN_000008-T1
40223	44130	gene
			locus_tag	FUN_000009
40223	40396	mRNA
40659	41193
41707	42080
43409	43609
43678	44130
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
			protein_id	gnl|ncbi|FUN_000009-T1
40223	40396	CDS
40659	41193
41707	42080
43409	43609
43678	44130
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
			protein_id	gnl|ncbi|FUN_000009-T1
87202	88320	gene
			locus_tag	FUN_000010
87202	87207	mRNA
88054	88320
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
			protein_id	gnl|ncbi|FUN_000010-T1
87202	87207	CDS
88054	88320
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
			protein_id	gnl|ncbi|FUN_000010-T1
106221	102510	gene
			locus_tag	FUN_000011
106221	106216	mRNA
104632	104258
103947	103696
103618	103229
103151	102510
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
			protein_id	gnl|ncbi|FUN_000011-T1
106221	106216	CDS
104632	104258
103947	103696
103618	103229
103151	102510
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
			protein_id	gnl|ncbi|FUN_000011-T1
167121	169212	gene
			locus_tag	FUN_000012
167121	168069	mRNA
168722	169212
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
			protein_id	gnl|ncbi|FUN_000012-T1
167121	168069	CDS
168722	169212
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
			protein_id	gnl|ncbi|FUN_000012-T1
180262	180579	gene
			locus_tag	FUN_000013
180262	180267	mRNA
180400	180579
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
			protein_id	gnl|ncbi|FUN_000013-T1
180262	180267	CDS
180400	180579
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
			protein_id	gnl|ncbi|FUN_000013-T1
210553	208619	gene
			locus_tag	FUN_000014
210553	210548	mRNA
210474	209053
208645	208619
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
			protein_id	gnl|ncbi|FUN_000014-T1
210553	210548	CDS
210474	209053
208645	208619
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
			protein_id	gnl|ncbi|FUN_000014-T1
>Feature sample4
1	7560	REFERENCE
			CFMR	12345
1466	1092	gene
			locus_tag	FUN_000015
1466	1092	mRNA
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
			protein_id	gnl|ncbi|FUN_000015-T1
1466	1092	CDS
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
			protein_id	gnl|ncbi|FUN_000015-T1
2126	>3537	gene
			locus_tag	FUN_000016
2126	2199	mRNA
2258	3224
3284	>3537
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
			protein_id	gnl|ncbi|FUN_000016-T1
2126	2199	CDS
2258	3224
3284	>3537
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
			protein_id	gnl|ncbi|FUN_000016-T1