Mercurial > repos > iuc > funannotate_compare

annotate test-data/predict_scratch/Genus_species.discrepency.report.txt @ 4:494f0bb4a993 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8307455ce2bb36981fee509f556ff17c227a9d8a
author iuc
date Sun, 22 Jan 2023 17:32:51 +0000
parents 857f7ac611e1
children a7ce2601500c
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0
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1 Discrepancy Report Results
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2
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3 Summary
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4 DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein"
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5 DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
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6 DISC_FEATURE_COUNT:gene: 16 present
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7 DISC_FEATURE_COUNT:CDS: 16 present
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8 DISC_FEATURE_COUNT:mRNA: 16 present
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9 DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present
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10 JOINED_FEATURES:26 features have joined locations.
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11 NO_ANNOTATION:2 bioseqs have no features
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12 DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
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13 FATAL: DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS:1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so
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14 ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same)
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15 MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments
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16 MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA.
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17 TECHNIQUE_NOT_TSA:4 technique are not set as TSA
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18 MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments.
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19 MISSING_PROJECT:20 sequences do not include project.
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20 DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
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21
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22
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23 Detailed Report
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24
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25 DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein"
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26
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27 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
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28 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname
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29 DiscRep_ALL:DISC_FEATURE_COUNT::gene: 16 present
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30 DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 16 present
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31 DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 16 present
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32 DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present
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33 genome:sample (length 215740)
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34 genome:sample2 (length 2030)
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35 genome:sample3 (length 2100)
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36 genome:sample4 (length 7560)
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37
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38 DiscRep_ALL:JOINED_FEATURES::26 features have joined locations.
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39 DiscRep_SUB:JOINED_FEATURES::26 features have joined location but no exception
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40 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016
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41 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016
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42 genome:mRNA hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002
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43 genome:CDS hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002
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44 genome:mRNA hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003
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45 genome:CDS hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003
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46 genome:CDS hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004
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47 genome:mRNA hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004
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48 genome:mRNA hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005
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49 genome:CDS hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005
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50 genome:CDS hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006
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51 genome:mRNA hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006
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52 genome:CDS hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007
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53 genome:mRNA hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007
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54 genome:CDS hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009
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55 genome:mRNA hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009
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56 genome:mRNA hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010
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57 genome:CDS hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010
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58 genome:CDS hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011
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59 genome:mRNA hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011
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60 genome:CDS hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012
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61 genome:mRNA hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012
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62 genome:CDS hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013
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63 genome:mRNA hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013
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64 genome:CDS hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014
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65 genome:mRNA hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014
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66
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67 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features
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68 genome:sample2 (length 2030)
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69 genome:sample3 (length 2100)
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70
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71 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
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72
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73 FATAL: DiscRep_ALL:DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS::1 featurepartial ends thands that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so
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74 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016
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75
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76 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same)
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77 genome:sample:"Annotated using 1.8.7"
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78 genome:sample2:"Annotated using 1.8.7"
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79 genome:sample3:"Annotated using 1.8.7"
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80 genome:sample4:"Annotated using 1.8.7"
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81
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82 DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments
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83 genome:sample (length 215740)
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84 genome:sample2 (length 2030)
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85 genome:sample3 (length 2100)
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86 genome:sample4 (length 7560)
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87
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88 DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA.
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89 genome:sample (length 215740)
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90 genome:sample2 (length 2030)
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91 genome:sample3 (length 2100)
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92 genome:sample4 (length 7560)
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93
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94 DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA
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95 genome:sample (length 215740)
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96 genome:sample2 (length 2030)
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97 genome:sample3 (length 2100)
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98 genome:sample4 (length 7560)
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99
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100 DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments.
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101 genome:sample (length 215740)
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102 genome:sample2 (length 2030)
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parents:
diff changeset
103 genome:sample3 (length 2100)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
104 genome:sample4 (length 7560)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
105
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
106 DiscRep_ALL:MISSING_PROJECT::20 sequences do not include project.
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
107 genome:sample (length 215740)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
108 genome:ncbi:FUN_000001-T1 (length 124)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
109 genome:ncbi:FUN_000002-T1 (length 82)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
110 genome:ncbi:FUN_000003-T1 (length 367)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
111 genome:ncbi:FUN_000004-T1 (length 831)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
112 genome:ncbi:FUN_000005-T1 (length 135)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
113 genome:ncbi:FUN_000006-T1 (length 137)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
114 genome:ncbi:FUN_000007-T1 (length 1002)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
115 genome:ncbi:FUN_000008-T1 (length 278)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
116 genome:ncbi:FUN_000009-T1 (length 578)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
117 genome:ncbi:FUN_000010-T1 (length 90)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
118 genome:ncbi:FUN_000011-T1 (length 554)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
119 genome:ncbi:FUN_000012-T1 (length 479)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
120 genome:ncbi:FUN_000013-T1 (length 61)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
121 genome:ncbi:FUN_000014-T1 (length 484)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
122 genome:sample2 (length 2030)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
123 genome:sample3 (length 2100)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
124 genome:sample4 (length 7560)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
125 genome:ncbi:FUN_000015-T1 (length 124)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
126 genome:ncbi:FUN_000016-T1 (length 432)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
127
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
128 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
129 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
130 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
131 genome:sample (length 215740)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
132 genome:sample2 (length 2030)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
133 genome:sample3 (length 2100)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
134 genome:sample4 (length 7560)
857f7ac611e1 "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
135