Mercurial > repos > iuc > funannotate_compare
view test-data/predict_scratch/Genus_species.discrepency.report.txt @ 4:494f0bb4a993 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8307455ce2bb36981fee509f556ff17c227a9d8a
| author | iuc |
|---|---|
| date | Sun, 22 Jan 2023 17:32:51 +0000 |
| parents | 857f7ac611e1 |
| children | a7ce2601500c |
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Discrepancy Report Results Summary DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein" DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same) DISC_FEATURE_COUNT:gene: 16 present DISC_FEATURE_COUNT:CDS: 16 present DISC_FEATURE_COUNT:mRNA: 16 present DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present JOINED_FEATURES:26 features have joined locations. NO_ANNOTATION:2 bioseqs have no features DISC_QUALITY_SCORES:Quality scores are missing on all sequences. FATAL: DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS:1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same) MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA. TECHNIQUE_NOT_TSA:4 technique are not set as TSA MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments. MISSING_PROJECT:20 sequences do not include project. DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same) Detailed Report DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein" DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same) DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname DiscRep_ALL:DISC_FEATURE_COUNT::gene: 16 present DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 16 present DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 16 present DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present genome:sample (length 215740) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:JOINED_FEATURES::26 features have joined locations. DiscRep_SUB:JOINED_FEATURES::26 features have joined location but no exception genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 genome:mRNA hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002 genome:CDS hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002 genome:mRNA hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003 genome:CDS hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003 genome:CDS hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004 genome:mRNA hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004 genome:mRNA hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005 genome:CDS hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005 genome:CDS hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006 genome:mRNA hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006 genome:CDS hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007 genome:mRNA hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007 genome:CDS hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009 genome:mRNA hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009 genome:mRNA hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010 genome:CDS hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010 genome:CDS hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011 genome:mRNA hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011 genome:CDS hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012 genome:mRNA hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012 genome:CDS hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013 genome:mRNA hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013 genome:CDS hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014 genome:mRNA hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features genome:sample2 (length 2030) genome:sample3 (length 2100) DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences. FATAL: DiscRep_ALL:DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS::1 featurepartial ends thands that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same) genome:sample:"Annotated using 1.8.7" genome:sample2:"Annotated using 1.8.7" genome:sample3:"Annotated using 1.8.7" genome:sample4:"Annotated using 1.8.7" DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments genome:sample (length 215740) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA. genome:sample (length 215740) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA genome:sample (length 215740) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments. genome:sample (length 215740) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:MISSING_PROJECT::20 sequences do not include project. genome:sample (length 215740) genome:ncbi:FUN_000001-T1 (length 124) genome:ncbi:FUN_000002-T1 (length 82) genome:ncbi:FUN_000003-T1 (length 367) genome:ncbi:FUN_000004-T1 (length 831) genome:ncbi:FUN_000005-T1 (length 135) genome:ncbi:FUN_000006-T1 (length 137) genome:ncbi:FUN_000007-T1 (length 1002) genome:ncbi:FUN_000008-T1 (length 278) genome:ncbi:FUN_000009-T1 (length 578) genome:ncbi:FUN_000010-T1 (length 90) genome:ncbi:FUN_000011-T1 (length 554) genome:ncbi:FUN_000012-T1 (length 479) genome:ncbi:FUN_000013-T1 (length 61) genome:ncbi:FUN_000014-T1 (length 484) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) genome:ncbi:FUN_000015-T1 (length 124) genome:ncbi:FUN_000016-T1 (length 432) DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same) DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing) DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique genome:sample (length 215740) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560)