annotate macros.xml @ 11:cb84060ad1aa draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">1.8.17</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <xml name="biotools">
        <xrefs>
            <xref type="bio.tools">
                funannotate
            </xref>
        </xrefs>
    </xml>
    <xml name="requirements">
        <requirement type="package" version="@TOOL_VERSION@">funannotate</requirement>
    </xml>

    <xml name="citations">
        <citations>
            <citation type="doi">10.5281/zenodo.4054262</citation>
        </citations>
    </xml>

    <xml name="busco_species">
        <options from_data_table="funannotate_options">
            <column name="value" index="0" />
            <column name="name" index="1" />
            <filter type="static_value" column="2" value="busco_db"/>
            <filter type="param_value" column="3" ref="database"/>
            <filter type="add_value" value="dikarya" name="Dikarya" index="0"/> <!-- this sets the default -->
        </options>
    </xml>


    <xml name="busco_seeds">
        <options from_data_table="funannotate_options">
            <column name="value" index="0" />
            <column name="name" index="1" />
            <filter type="static_value" column="2" value="trained_species"/>
            <filter type="param_value" column="3" ref="database"/>
            <yield/>
        </options>
    </xml>
</macros>