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annotate test-data/gamma_amr.gamma @ 0:0228b27d4373 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gamma/ commit 0fe928343050c72ef7e1eb90f7b1dd4ad029febd
author iuc
date Sat, 16 Aug 2025 12:31:51 +0000
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0228b27d4373 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gamma/ commit 0fe928343050c72ef7e1eb90f7b1dd4ad029febd
iuc
parents:
diff changeset
1 Gene Contig Start Stop Match_Type Description Codon_Changes BP_Changes Transversions Codon_Percent BP_Percent Percent_Length Match_Length Target_Length Strand
0228b27d4373 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gamma/ commit 0fe928343050c72ef7e1eb90f7b1dd4ad029febd
iuc
parents:
diff changeset
2 blaTEM-1A_1_HM749966 pDHQP1701672_amr_plasmid 24988 25849 Native No coding mutations 0 1 1 1 0.9988 1 861 861 -
0228b27d4373 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gamma/ commit 0fe928343050c72ef7e1eb90f7b1dd4ad029febd
iuc
parents:
diff changeset
3 blaOXA-9_1_KQ089875 pDHQP1701672_amr_plasmid 26548 27373 Truncation truncation at codon 112 (of 275 codons),1 coding mutations 1 1 0 0.9964 0.9988 1 825 825 -
0228b27d4373 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gamma/ commit 0fe928343050c72ef7e1eb90f7b1dd4ad029febd
iuc
parents:
diff changeset
4 blaKPC-2_1_AY034847 pDHQP1701672_amr_plasmid 37034 37916 Native No coding mutations 0 0 0 1 1 1 882 882 -