Mercurial > repos > iuc > gemini_actionable_mutations
comparison gemini_actionable_mutations.xml @ 5:643a9ad97f08 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
author | iuc |
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date | Fri, 11 Jan 2019 17:49:17 -0500 |
parents | 712aa8283200 |
children | db47f4939381 |
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4:712aa8283200 | 5:643a9ad97f08 |
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1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> | 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@"> |
2 <description>Retrieve genes with actionable somatic mutations via COSMIC and DGIdb</description> | 2 <description>Retrieve genes with actionable somatic mutations via COSMIC and DGIdb</description> |
3 <macros> | 3 <macros> |
4 <import>gemini_macros.xml</import> | 4 <import>gemini_macros.xml</import> |
5 <token name="@BINARY@">actionable_mutations</token> | 5 <token name="@BINARY@">actionable_mutations</token> |
6 </macros> | 6 </macros> |
8 <expand macro="stdio" /> | 8 <expand macro="stdio" /> |
9 <expand macro="version_command" /> | 9 <expand macro="version_command" /> |
10 <command> | 10 <command> |
11 <![CDATA[ | 11 <![CDATA[ |
12 gemini @BINARY@ | 12 gemini @BINARY@ |
13 "${ infile }" | tr -s ' ' '\t' | 13 '$infile' | tr -s ' ' '\t' |
14 > "${ outfile }" | 14 > '$outfile' |
15 ]]> | 15 ]]> |
16 </command> | 16 </command> |
17 <inputs> | 17 <inputs> |
18 <expand macro="infile" /> | 18 <expand macro="infile" /> |
19 </inputs> | 19 </inputs> |